# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh07162.fasta.huge -Q ../query/FLJ00373.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00373, 114 aa vs ./tmplib.10216 library 2210880 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.4288+/-0.00332; mu= 8.7882+/- 0.224 mean_var=59.3586+/-12.991, 0's: 0 Z-trim: 0 B-trim: 7 in 1/39 Lambda= 0.166469 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1773 ( 3434 res) hj00752s2 (3434) 85 29.1 1.7 FLJ00262 ( 1112 res) sj01172 (1112) 76 26.5 3.4 KIAA0582 ( 760 res) fh15957 ( 760) 74 25.8 3.5 KIAA1851 ( 523 res) hg04492 ( 523) 72 25.2 3.7 KIAA1790 ( 1369 res) fh24104 (1369) 76 26.5 3.9 KIAA0244 ( 2044 res) ha04644s1 (2044) 76 26.7 5.3 KIAA1973 ( 1176 res) pf00154 (1176) 72 25.5 6.8 KIAA1712 ( 391 res) fj18794 ( 391) 66 23.7 8.2 KIAA1301 ( 1581 res) fg06833 (1581) 72 25.6 8.5 KIAA0747 ( 1072 res) hk04143 (1072) 68 24.5 12 KIAA0020 ( 647 res) ha00602 ( 647) 65 23.6 14 KIAA0942 ( 537 res) hh04979s1 ( 537) 64 23.3 14 KIAA0294 ( 1405 res) hf00223s1 (1405) 68 24.6 15 KIAA1414 ( 1586 res) fh14368(revised) (1586) 68 24.7 17 KIAA0344 ( 2066 res) hg01568 (2066) 69 25.0 17 FLJ00094 ( 376 res) as00094 ( 376) 61 22.5 18 KIAA0178 ( 1233 res) ha02501s1 (1233) 66 24.1 19 KIAA0214 ( 790 res) ha04778 ( 790) 64 23.5 19 KIAA1339 ( 409 res) fj00071 ( 409) 61 22.5 20 FLJ00001 ( 155 res) as00001 ( 155) 56 20.9 22 FLJ00115 ( 757 res) as00115 ( 757) 63 23.2 22 KIAA1793 ( 1270 res) fj07087 (1270) 65 23.9 23 KIAA0763 ( 843 res) hk04726 ( 843) 63 23.2 24 KIAA1669 ( 1405 res) fh18133 (1405) 65 23.9 25 KIAA1494 ( 638 res) fj08673 ( 638) 61 22.7 27 KIAA0449 ( 1628 res) ff06247 (1628) 65 24.0 28 FLJ00204 ( 573 res) sj04432 ( 573) 60 22.4 29 KIAA1630 ( 901 res) fh15267(revised) ( 901) 62 23.0 29 KIAA1004 ( 1163 res) hj01244 (1163) 63 23.4 30 KIAA0541 ( 1500 res) fg05763 (1500) 64 23.7 31 KIAA1465 ( 785 res) fh13187 ( 785) 61 22.7 31 FLJ00161 ( 596 res) sh06688 ( 596) 59 22.1 36 KIAA0226 ( 973 res) fg02838 ( 973) 61 22.8 37 KIAA0445 ( 1919 res) hg00102s1 (1919) 64 23.8 37 KIAA0861 ( 982 res) hk06521 ( 982) 61 22.8 37 KIAA1242 ( 504 res) fh10406 ( 504) 58 21.8 37 KIAA0410 ( 505 res) hg01877 ( 505) 58 21.8 37 KIAA1530 ( 794 res) hj05130(revised) ( 794) 60 22.5 37 KIAA1238 ( 408 res) fh09938 ( 408) 57 21.5 38 FLJ00250 ( 332 res) sj08804 ( 332) 56 21.2 38 KIAA0845 ( 1034 res) hk05234s1 (1034) 61 22.8 38 KIAA0340 ( 1053 res) hg01396 (1053) 61 22.8 39 KIAA1271 ( 542 res) hk06527 ( 542) 58 21.9 39 KIAA1314 ( 681 res) fh12718 ( 681) 59 22.2 39 KIAA1846 ( 354 res) fg06344s1 ( 354) 56 21.2 40 KIAA1510 ( 1140 res) fg02934(revised) (1140) 61 22.9 41 KIAA0466 ( 1214 res) pg00625 (1214) 61 22.9 43 KIAA1498 ( 1731 res) hh01611 (1731) 62 23.3 47 KIAA2003 ( 460 res) ah02593 ( 460) 56 21.3 48 KIAA1865 ( 723 res) fj14303 ( 723) 58 22.0 48 >>KIAA1773 ( 3434 res) hj00752s2 (3434 aa) initn: 91 init1: 60 opt: 85 Z-score: 102.1 bits: 29.1 E(): 1.7 Smith-Waterman score: 85; 31.429% identity (57.143% similar) in 70 aa overlap (13-80:2718-2781) 10 20 30 40 FLJ003 VAEVFCGVSRLLQDCVVSVTFSICQPNSDHSSSFKVSQRLSQ :. :: :: .. . :.. ..: :.. KIAA17 GCLVLLEPLDFESLTQYNLTVAAADRGQPPQSSVVPVTVTVLDVNDNPPVFTRASYRVTV 2690 2700 2710 2720 2730 2740 50 60 70 80 90 100 FLJ003 PGVAIGLAWTPLGGEIMFVEASRMDG--EGQLTLTGQLGDVMKESAHLAISWLRSNAKKY : ::.:.:.. :::: : .: . .: . :: KIAA17 P------EDTPVGAELLHVEASDADPGPHGLVRFTVSSGDPSGLFELDESSGTLRLAHAL 2750 2760 2770 2780 2790 2800 110 FLJ003 QLTNGRSLHPARQA KIAA17 DCETQARHQLVVQAADPAGAHFALAPVTIEVQDVNDHGPAFPLNLLSTSVAENQPPGTLV 2810 2820 2830 2840 2850 2860 >>FLJ00262 ( 1112 res) sj01172 (1112 aa) initn: 58 init1: 58 opt: 76 Z-score: 96.9 bits: 26.5 E(): 3.4 Smith-Waterman score: 76; 28.788% identity (53.030% similar) in 66 aa overlap (2-67:870-934) 10 20 30 FLJ003 VAEVFCGVSRLLQDCVVSVTFSICQPNSDHS :. :::: :.: .. : ..:. FLJ002 SEGRGEEVVWCLDDKANSLVMYHSTTYQLCARYFCGVPSPLRDMFPVRPLDTEPPAASHT 840 850 860 870 880 890 40 50 60 70 80 90 FLJ003 SSFKVSQRLSQPGVAIGLAWTPLGGEIMFVEASRMDGEGQLTLTGQLGDVMKESAHLAIS .. :: . : :.: . :: .:.. . : : FLJ002 ANPKVPEGDSIADVSIMYS-EELGTQILIHQESLTDYCSMSSYSSSPPRQAARSPSSLPS 900 910 920 930 940 950 100 110 FLJ003 WLRSNAKKYQLTNGRSLHPARQA FLJ002 SPASSSSVPFSTDCEDSDMLHTPGAASDRSEHDLTPMDGETFSQHLQAVKILAVRDLIWV 960 970 980 990 1000 1010 >>KIAA0582 ( 760 res) fh15957 (760 aa) initn: 68 init1: 45 opt: 74 Z-score: 96.5 bits: 25.8 E(): 3.5 Smith-Waterman score: 74; 35.593% identity (52.542% similar) in 59 aa overlap (27-79:526-584) 10 20 30 40 50 FLJ003 VAEVFCGVSRLLQDCVVSVTFSICQPNSDHSSSFKVSQRLSQ--PGVAIGLAWTPL .:: .:: :. :: ::.:. . : KIAA05 SSLVSYLGSISTLVTLPTGDIKGQSPLEVSDSDGPASFPSSSSQSQLPPGAALQGSGDPE 500 510 520 530 540 550 60 70 80 90 100 110 FLJ003 GGEIMF----VEASRMDGEGQLTLTGQLGDVMKESAHLAISWLRSNAKKYQLTNGRSLHP : . : :.: :::.: . :: KIAA05 GQNPCFLRSFVRAHDSAGEGSLGSSQALGVSSGLLKTRPSLPARLDRWPFSDPDVEGQLP 560 570 580 590 600 610 >>KIAA1851 ( 523 res) hg04492 (523 aa) initn: 36 init1: 36 opt: 72 Z-score: 96.1 bits: 25.2 E(): 3.7 Smith-Waterman score: 72; 24.719% identity (58.427% similar) in 89 aa overlap (9-90:286-370) 10 20 30 FLJ003 VAEVFCGVSRLLQDCVVSVTFSICQPNSDH-----SSS ::....: . .... .:. .: . : KIAA18 RGLSAVRDFAREYVCLAFKVPASRVRFFQHSRVFENCSSAPALGLERPE-EHLYALVGRS 260 270 280 290 300 310 40 50 60 70 80 90 FLJ003 FKVSQRLSQPGVAIGLAWTPLGGEIMFVEASRMDGEGQLTLTGQL--GDVMKESAHLAIS ... : : :. .::. :.. . .:: :: . :.: :.:... : : . KIAA18 LRLYCNTSVP--AMRIAWVSPQQELLRAPGSR-DGSIAVLADGSLAIGNVQEQHAGLFVC 320 330 340 350 360 370 100 110 FLJ003 WLRSNAKKYQLTNGRSLHPARQA KIAA18 LATGPRLHHNQTHEYNVSVHFPRPEPEAFNTGFTTLLGCAVGLVLVLLYLFAPPCRCCRR 380 390 400 410 420 430 >>KIAA1790 ( 1369 res) fh24104 (1369 aa) initn: 58 init1: 58 opt: 76 Z-score: 95.7 bits: 26.5 E(): 3.9 Smith-Waterman score: 76; 28.788% identity (53.030% similar) in 66 aa overlap (2-67:1127-1191) 10 20 30 FLJ003 VAEVFCGVSRLLQDCVVSVTFSICQPNSDHS :. :::: :.: .. : ..:. KIAA17 SEGRGEEVVWCLDDKANSLVMYHSTTYQLCARYFCGVPSPLRDMFPVRPLDTEPPAASHT 1100 1110 1120 1130 1140 1150 40 50 60 70 80 90 FLJ003 SSFKVSQRLSQPGVAIGLAWTPLGGEIMFVEASRMDGEGQLTLTGQLGDVMKESAHLAIS .. :: . : :.: . :: .:.. . : : KIAA17 ANPKVPEGDSIADVSIMYS-EELGTQILIHQESLTDYCSMSSYSSSPPRQAARSPSSLPS 1160 1170 1180 1190 1200 1210 100 110 FLJ003 WLRSNAKKYQLTNGRSLHPARQA KIAA17 SPASSSSVPFSTDCEDSDMLHTPGAASDRSEHDLTPMDGETFSQHLQAVKILAVRDLIWV 1220 1230 1240 1250 1260 1270 >>KIAA0244 ( 2044 res) ha04644s1 (2044 aa) initn: 47 init1: 47 opt: 76 Z-score: 93.4 bits: 26.7 E(): 5.3 Smith-Waterman score: 76; 34.286% identity (60.000% similar) in 70 aa overlap (22-84:701-768) 10 20 30 40 50 FLJ003 VAEVFCGVSRLLQDCVVSVTFSICQPNSDHSSSFKVSQRLSQPGVAIGLAW .: . .:::::::. :. . :. :. KIAA02 PEKNLQPRQRRSSKSFSLDEPPLFIPDNIATIRREGSDHSSSFE-SKYMWTPSKQCGFCK 680 690 700 710 720 60 70 80 90 100 FLJ003 TPLGGEIMFVEASRMD----GE--G-QLTLTGQLGDVMKESAHLAISWLRSNAKKYQLTN : :...: : .: : :. : .:. . :.:. :: KIAA02 KPHGNRFM-VGCGRCDDWFHGDCVGLSLSQAQQMGEEDKEYVCVKCCAEEDKKTEILDPD 730 740 750 760 770 780 110 FLJ003 GRSLHPARQA KIAA02 TLENQATVEFHSGDKTMECEKLGLSKHTTNDRTKYIDDTVKHKVKILKRESGEGRNSSDC 790 800 810 820 830 840 >>KIAA1973 ( 1176 res) pf00154 (1176 aa) initn: 85 init1: 63 opt: 72 Z-score: 91.4 bits: 25.5 E(): 6.8 Smith-Waterman score: 72; 30.000% identity (73.333% similar) in 30 aa overlap (75-104:675-704) 50 60 70 80 90 100 FLJ003 VAIGLAWTPLGGEIMFVEASRMDGEGQLTLTGQLGDVMKESAHLAISWLRSNAKKYQLTN :: .::... .::.:.. . :. . :. . KIAA19 LEKIAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLRGTAHMAVTSFSINTARSQVID 650 660 670 680 690 700 110 FLJ003 GRSLHPARQA KIAA19 FTSPFFSTSLGILVRTRDTAAPIGAFMWPLHWTMWLGIFVALHITAVFLTLYEWKSPFGL 710 720 730 740 750 760 >>KIAA1712 ( 391 res) fj18794 (391 aa) initn: 33 init1: 33 opt: 66 Z-score: 89.9 bits: 23.7 E(): 8.2 Smith-Waterman score: 66; 20.833% identity (58.333% similar) in 72 aa overlap (6-77:100-170) 10 20 30 FLJ003 VAEVFCGVSRLLQDCVVSVTFSICQPNSDHSSSFK :: .. . : .. . . ... :: : KIAA17 NDLRFIDAVYKLLRDQFNYKPILTKKQFIQCGFAEWKIQIVCDILNCVMKKHKELSSLQK 70 80 90 100 110 120 40 50 60 70 80 90 FLJ003 VSQRLSQPGVAIGLAWTPLGGEIMFVEASRMDGEGQLTLTGQLGDVMKESAHLAISWLRS . .. .. .. : . ::..: . .:: .: :.. .:. KIAA17 IPSQ-QRKKISSGKSEPPLSNEKISAEAVGVDISGRFMTSGKKKAVVIRHLYNEDNVDIS 130 140 150 160 170 180 100 110 FLJ003 NAKKYQLTNGRSLHPARQA KIAA17 EDTLSPITDVNEAVDVSDLNATEIKMPEVKVPEIKAEQQDVNVNPEITALQTMLAECQEN 190 200 210 220 230 240 >>KIAA1301 ( 1581 res) fg06833 (1581 aa) initn: 55 init1: 55 opt: 72 Z-score: 89.7 bits: 25.6 E(): 8.5 Smith-Waterman score: 72; 47.619% identity (64.286% similar) in 42 aa overlap (55-92:495-535) 30 40 50 60 70 80 FLJ003 QPNSDHSSSFKVSQRLSQPGVAIGLAWTPLGGEIMFVEASRMDGEGQLTLTGQLGD--VM :: ::: .::: : .:.:: .: : : KIAA13 RLNAMLHIDSDEEDHEFQQDLGYPSSLEEEGGLIMFSRASRAD-DGSLTSQTKLEDNPVE 470 480 490 500 510 520 90 100 110 FLJ003 KE--SAHLAISWLRSNAKKYQLTNGRSLHPARQA .: :.: : :. KIAA13 NEEASTHEAASFEDKPENLPELAESSLPAGPAPEEGEGGPEPQPSADQGSAELCGSQEVD 530 540 550 560 570 580 >>KIAA0747 ( 1072 res) hk04143 (1072 aa) initn: 74 init1: 49 opt: 68 Z-score: 86.7 bits: 24.5 E(): 12 Smith-Waterman score: 68; 30.435% identity (56.522% similar) in 69 aa overlap (18-79:816-879) 10 20 30 40 FLJ003 VAEVFCGVSRLLQDCVVSVTFSICQPNSDHSSSFKVSQRLSQPGVAI :..: : .: :. :.... : :: . KIAA07 HLSPYATLTVGDSSHKTKTISQTSAPVWDESASFLIRKP---HTESLELQVRGEGTGV-L 790 800 810 820 830 840 50 60 70 80 90 100 FLJ003 GLAWTPLGGEIMFVEASRMD-------GEGQLTLTGQLGDVMKESAHLAISWLRSNAKKY : ::. :.. .. .: :.::. : .::: KIAA07 GSLSLPLS-ELLVADQLCLDRWFTLSSGQGQVLLRAQLGILVSQHSGVEAHSHSYSHSSS 850 860 870 880 890 900 110 FLJ003 QLTNGRSLHPARQA KIAA07 SLSEEPELSGGPPHITSSAPELRQRLTHVDSPLEAPAGPLGQVKLTLWYYSEERKLVSIV 910 920 930 940 950 960 114 residues in 1 query sequences 2210880 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:02:16 2009 done: Fri Feb 27 11:02:16 2009 Total Scan time: 0.300 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]