hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/shimazu/full/sh/sh06964/interpro/cnk_1/seq.in
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Query:  sh06964  649

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
GBP      Guanylate-binding protein, N-terminal domain   588.3   4.6e-173   1
GBP_C    Guanylate-binding protein, C-terminal domain   563.2   1.7e-165   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
GBP        1/1      42   305 ..     1   289 []   588.3 4.6e-173
GBP_C      1/1     307   603 ..     1   305 []   563.2 1.7e-165

Alignments of top-scoring domains:
GBP: domain 1 of 1, from 42 to 305: score 588.3, E = 4.6e-173
                   *->dgqlelNeeALeiLLlsesaitqpVvVVaivGlyRtGKSfLmNkLag
                      ++ql++N++ALeiL    ++i+qpVvVVaivGlyRtGKS+LmN+Lag
     sh06964    42    EEQLTVNSKALEIL----DKISQPVVVVAIVGLYRTGKSYLMNRLAG 84   

                   YlynkdssdWlggnsekntGFslgsTveseTkGIwmWcvpflidhpnkpe
                                   k++GF+lgsTv+seTkGIwmWcvp    h++kp+
     sh06964    85 ----------------KRNGFPLGSTVQSETKGIWMWCVP----HLSKPN 114  

                   vtLvLLDTeGlgDveksdnkndawIFALavLLSStfVYNsmgtIneqaLd
                   +tLvLLDTeGlgDveks++knd+wIFALavLLSS fVYNs++tIn+qaL+
     sh06964   115 HTLVLLDTEGLGDVEKSNPKNDSWIFALAVLLSSSFVYNSVSTINHQALE 164  

                   qLhlVTELTelIRakssPdegrvadssefvsfFPdfvWtvRDFsLeLeld
                   qLh+VTEL elIRaks+P++++ +dssef+sfFPdf+WtvRDF+LeL+ld
     sh06964   165 QLHYVTELAELIRAKSCPRPDEAEDSSEFASFFPDFIWTVRDFTLELKLD 214  

                   ggaitgdeyLenaLklsqgqheelqnsNelRecIrkfFpkrkCFvfdrPg
                   g +it+deyLenaLkl++g+++++qnsN++RecIr+fF krkCFvfdrP+
     sh06964   215 GNPITEDEYLENALKLIPGKNPKIQNSNMPRECIRHFFRKRKCFVFDRPT 264  

                   lkkkllpqleelredeLdpeFkeqldafcsyifspeskvktl<-*
                   ++k+ l +++e++e+ L++ F +q+d+fcsyif+ ++k+ktl   
     sh06964   265 NDKQYLNHMDEVPEENLERHFLMQSDNFCSYIFT-HAKTKTL    305  

GBP_C: domain 1 of 1, from 307 to 603: score 563.2, E = 1.7e-165
                   *->GGiiVTGprLatLVqtYvnAInSGsVPClesavtTLAQiENsaAVqk
                      +GiiVTG rL+tLV tYv+AInSG+VPCle+avt+LAQ+EN aAVq 
     sh06964   307    EGIIVTGKRLGTLVVTYVDAINSGAVPCLENAVTALAQLENPAAVQR 353  

                   AiahYeeqMeQrleLPTetlQeLLdvHrdCEkEAlavFmenSFkNVDvkQ
                   A++hY++qM+Q l+LPT+tlQeLLdvH++CE+EA+avFme+SFk  D+++
     sh06964   354 AADHYSQQMAQQLRLPTDTLQELLDVHAACEREAIAVFMEHSFK--DENH 401  

                   kFqrkLvaqLeaakedFcrkNeeaSssrCqalLedLskdLeelikqGdfs
                   +Fq+kLv ++e++k+dF+++NeeaS ++Cqa+L +Ls++L e+i +G fs
     sh06964   402 EFQKKLVDTIEKKKGDFVLQNEEASAKYCQAELKRLSEHLTESILRGIFS 451  

                   vpGGhrLfleavqeieakYkQvPrKGvkAsevLkefLqDILVHskedlaD
                   vpGGh L+le ++ +e +Yk vPrKGvkA evL++fLq     s+  ++ 
     sh06964   452 VPGGHNLYLEEKKQVEWDYKLVPRKGVKANEVLQNFLQ-----SQVVVEE 496  

                   sLlqtdqaLtlkekaiEaerNikkEaAEkaekllrEkQKrhEeamEakEk
                   s+lq+d+aLt++ekai+aer + kEaAEk+++llrEkQK+++++mEa+E+
     sh06964   497 SILQSDKALTAGEKAIAAER-AMKEAAEKEQELLREKQKEQQQMMEAQER 545  

                   syqEhkkqLtekmEserkqLmaEqnrmLEhklkeqeeLleeGFknestll
                   s+qE+++qL++kmE+er+ L++E++r+L hklk+qee+l+e F+++s++l
     sh06964   546 SFQENIAQLKKKMERERENLLREHERLLKHKLKVQEEMLKEEFQKKSEQL 595  

                   ekeIselr<-*
                    keI +l+   
     sh06964   596 NKEINQLK    603  

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