hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/shimazu/full/sh/sh06750/interpro/cnk_1/seq.in
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Query:  sh06750  449

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MBT      mbt repeat                                     405.0   7.1e-118   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MBT        1/4      46   123 ..     1    77 []    73.3  5.1e-18
MBT        2/4     159   228 ..     1    77 []   113.8  3.4e-30
MBT        3/4     264   341 ..     1    77 []    80.4  3.8e-20
MBT        4/4     372   443 ..     1    77 []   146.6  4.5e-40

Alignments of top-scoring domains:
MBT: domain 1 of 4, from 46 to 123: score 73.3, E = 5.1e-18
                   *->MKLEavDpqnp...ssicvATVvevlGrrylrlrfDGwdsdypsDfW
                      MK E+++ + + +++ +++A V+   G+r ++lr++G+++d ++DfW
     sh06750    46    MKVEVLNSDAVlpsRVYWIASVIQTAGYR-VLLRYEGFENDASHDFW 91   

                   cdvdSpdIfPvGWCeknghpLqPPpgyrskkfs<-*
                   c+    d++P+GWC+ n++ L  Pp+  + kf+   
     sh06750    92 CNLGTVDVHPIGWCAINSKILV-PPRTIHAKFT    123  

MBT: domain 2 of 4, from 159 to 228: score 113.8, E = 3.4e-30
                   *->MKLEavDpqnpssicvATVvevlGrrylrlrfDGwdsdypsDfWcdv
                      M+LE+vD++++s++++A V++v+G+r lrl +++ dsd+  DfWc++
     sh06750   159    MRLEVVDKSQVSRTRMAVVDTVIGGR-LRLLYEDGDSDD--DFWCHM 202  

                   dSpdIfPvGWCeknghpLqPPpgyrskkfs<-*
                   +Sp I+PvGW++++gh ++      +++++   
     sh06750   203 WSPLIHPVGWSRRVGHGIK----MSERRSD    228  

MBT: domain 3 of 4, from 264 to 341: score 80.4, E = 3.8e-20
                   *->MKLEavDpqnpssicvATVvevlGrrylrlrfDGwdsdypsDfWcdv
                      MKLEa+Dp n   icvATV +vl   yl++  DG +s +  D++c++
     sh06750   264    MKLEAIDPLNLGNICVATVCKVLLDGYLMICVDGGPSTDGLDWFCYH 310  

                   d.SpdIfPvGWCeknghpLqPPpgyrskkfs<-*
                    +S+ IfP+ +C kn  +L+PP+gy+ ++f    
     sh06750   311 AsSHAIFPATFCQKNDIELTPPKGYEAQTFN    341  

MBT: domain 4 of 4, from 372 to 443: score 146.6, E = 4.5e-40
                   *->MKLEavDpqnpssicvATVvevlGrrylrlrfDGwdsdypsDfWcdv
                      MKLEavD+++p++icvATV++v++r+ l+++fDGwds+y  D+W+d+
     sh06750   372    MKLEAVDLMEPRLICVATVKRVVHRL-LSIHFDGWDSEY--DQWVDC 415  

                   dSpdIfPvGWCeknghpLqPPpgyrskkfs<-*
                   +SpdI+PvGWCe++g++LqPP  ++    s   
     sh06750   416 ESPDIYPVGWCELTGYQLQPP--VAAGVGS    443  

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