# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh06693.fasta.huge -Q ../query/FLJ00370.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00370, 153 aa vs ./tmplib.10216 library 2210841 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.6004+/-0.00414; mu= 13.5888+/- 0.279 mean_var=100.3867+/-22.166, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.128008 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1120 ( 1024 res) hg02941 (1024) 93 26.9 3.1 KIAA1292 ( 595 res) hk05468(revised) ( 595) 90 26.0 3.4 KIAA1093 ( 1727 res) fh18956 (1727) 93 27.2 4.3 KIAA0659 ( 1049 res) fh22726 (1049) 89 26.1 5.3 KIAA0323 ( 724 res) hg00467 ( 724) 86 25.4 6.3 KIAA1637 ( 479 res) fj00747s1 ( 479) 82 24.4 8.2 FLJ00056 ( 1310 res) as00056 (1310) 86 25.7 8.9 KIAA0644 ( 887 res) hj03618 ( 887) 84 25.1 9.1 KIAA1442 ( 627 res) hh10127b ( 627) 82 24.5 9.6 FLJ00128 ( 1546 res) sh01521 (1546) 86 25.8 9.8 KIAA1804 ( 490 res) fj22769 ( 490) 80 24.0 11 KIAA1526 ( 963 res) fj04743(revised) ( 963) 82 24.8 12 FLJ00311 ( 249 res) sh06450 ( 249) 75 22.7 14 KIAA1822 ( 533 res) fh13781 ( 533) 78 23.7 15 KIAA1535 ( 711 res) fk12792 ( 711) 78 23.9 17 KIAA1909 ( 1287 res) ff10210 (1287) 80 24.6 19 KIAA2000 ( 699 res) bf00135 ( 699) 77 23.7 19 KIAA1816 ( 1162 res) fh16716 (1162) 79 24.4 20 KIAA1491 ( 757 res) fj08187 ( 757) 77 23.7 20 FLJ00169 ( 432 res) sh07709 ( 432) 74 22.8 22 KIAA1975 ( 597 res) aj01061 ( 597) 75 23.2 23 FLJ00417 ( 600 res) sj06336 ( 600) 75 23.2 23 FLJ00103 ( 678 res) as00103 ( 678) 75 23.3 25 KIAA1088 ( 1400 res) hk02589s1 (1400) 78 24.3 26 KIAA1669 ( 1405 res) fh18133 (1405) 78 24.3 26 FLJ00238 ( 204 res) sj07412 ( 204) 69 21.5 26 KIAA1863 ( 452 res) fj07583 ( 452) 72 22.5 28 FLJ00059 ( 477 res) as00059 ( 477) 72 22.5 29 FLJ00379 ( 487 res) sj00523 ( 487) 72 22.5 30 KIAA1963 ( 488 res) ph00179 ( 488) 72 22.5 30 FLJ00005 ( 111 res) as00005 ( 111) 65 20.4 30 KIAA0934 ( 1585 res) pg00224 (1585) 77 24.2 31 KIAA1814 ( 1285 res) ph00952 (1285) 76 23.9 31 FLJ00009 ( 540 res) as00009 ( 540) 72 22.6 32 FLJ00104 ( 287 res) as00104 ( 287) 69 21.7 32 KIAA0595 ( 1666 res) hj02929s1 (1666) 77 24.2 32 FLJ00192 ( 1437 res) sj02564 (1437) 76 23.9 34 KIAA2002 ( 764 res) bf00111 ( 764) 73 23.0 34 KIAA1654 ( 91 res) fh10218 ( 91) 63 19.9 35 FLJ00100 ( 672 res) as00100 ( 672) 72 22.7 36 KIAA1692 ( 855 res) fj05607 ( 855) 73 23.1 36 KIAA0514 ( 483 res) hf00310 ( 483) 70 22.2 38 KIAA1213 ( 484 res) fh01142 ( 484) 70 22.2 38 KIAA0899 ( 939 res) hk09548s1 ( 939) 73 23.1 38 FLJ00010 ( 772 res) as00010 ( 772) 72 22.8 39 KIAA0202 ( 508 res) ha02944 ( 508) 70 22.2 39 KIAA2021 ( 648 res) ah05004 ( 648) 71 22.5 40 KIAA1288 ( 1245 res) hh13551(revised) (1245) 74 23.5 40 KIAA1791 ( 653 res) fh26241 ( 653) 71 22.5 40 FLJ00381 ( 343 res) sj01456 ( 343) 68 21.6 40 >>KIAA1120 ( 1024 res) hg02941 (1024 aa) initn: 78 init1: 78 opt: 93 Z-score: 97.4 bits: 26.9 E(): 3.1 Smith-Waterman score: 93; 38.182% identity (61.818% similar) in 55 aa overlap (71-125:844-897) 50 60 70 80 90 100 FLJ003 TAQETVHVASYYWSLTGPDIGVNDSSSQLVRPALAPPHPGAGNTASQAAYLCRRLGHQAR : ::.:: :. : :. . :::. ..: KIAA11 SDTSLDASPSSSAGSLQTTLEDSLTLSDSPRRALGPPAPAPGPRAGLSPAARRRLSLRGR 820 830 840 850 860 870 110 120 130 140 150 FLJ003 GLSLVVGSSMEQGLGRSFGGSNGRGVKELGLWVTKHSDCAWSSLALTKGHPDT :: . : .: ..: :::.. : KIAA11 GLFSLRGLRAHQR-SHSSGGSTSPGCTHHDSMDPSDEEGRGGAGGGGAGSEHSETLSSLS 880 890 900 910 920 930 >>KIAA1292 ( 595 res) hk05468(revised) (595 aa) initn: 68 init1: 50 opt: 90 Z-score: 96.9 bits: 26.0 E(): 3.4 Smith-Waterman score: 90; 32.000% identity (52.000% similar) in 75 aa overlap (17-84:501-575) 10 20 30 40 FLJ003 AQCGSPHRLVLVESIPQDLPSAAGSPS----AQPLGQAWLQL-LDT : ::: :.: : : . :... : KIAA12 TSSSSLQADQASSNAPGPRPSSGSHRSPARQGLPSPPGTPHSPSYAGPKAVAFIHTDLPE 480 490 500 510 520 530 50 60 70 80 90 FLJ003 AQETVHVASYYWSLTGPDIGVNDSSSQLVR--PALAPPHPGAGNTASQAAYLCRRLGHQA .. : . .: : .: .: :.: :: .:: :.:. : KIAA12 PPPSLTVQRDHPQLKTPPSKLNGQSPGLARLGPATGPPGPSASPTRHTLVKKVSGVGGTT 540 550 560 570 580 590 100 110 120 130 140 150 FLJ003 RGLSLVVGSSMEQGLGRSFGGSNGRGVKELGLWVTKHSDCAWSSLALTKGHPDT KIAA12 YEISV >>KIAA1093 ( 1727 res) fh18956 (1727 aa) initn: 72 init1: 46 opt: 93 Z-score: 95.0 bits: 27.2 E(): 4.3 Smith-Waterman score: 93; 25.424% identity (52.542% similar) in 118 aa overlap (42-150:1593-1706) 20 30 40 50 60 70 FLJ003 VESIPQDLPSAAGSPSAQPLGQAWLQLLDTAQETVHVASYYWSLTGPDIGVNDSSSQLVR :: ..:. . .....: :... KIAA10 MQHGPLLTFHLNLTQGTALIRYSTKQEAAKAQTALHMCVLGNTTILAEFATDDEVSRFLA 1570 1580 1590 1600 1610 1620 80 90 100 110 120 FLJ003 PALAPPHPGAGNTASQAAYLCRRLGHQAR-----GLSLVVGSSMEQGLGR---SFGGSNG : :: :.: .: :.. . :.. .:.: ::. :::. : :::.: KIAA10 QA-QPPTPAATPSAPAAGWQSLETGQNQSDPVGPALNLFGGST---GLGQWSSSAGGSSG 1630 1640 1650 1660 1670 130 140 150 FLJ003 RGVKELGLW-VTKHSDCAWSSLALTKGHPDT . .:: ..:. :. .. : KIAA10 ADLAGASLWGPPNYSSSLWGVPTVEDPHRMGSPAPLLPGDLLGGGSDSI 1680 1690 1700 1710 1720 >>KIAA0659 ( 1049 res) fh22726 (1049 aa) initn: 74 init1: 74 opt: 89 Z-score: 93.3 bits: 26.1 E(): 5.3 Smith-Waterman score: 89; 37.500% identity (66.071% similar) in 56 aa overlap (95-147:434-489) 70 80 90 100 110 120 FLJ003 SSSQLVRPALAPPHPGAGNTASQAAYLCRRLGHQARGLSL-VVGSSMEQG--LGRSFGGS :::.. :: . ...:: :...:: . KIAA06 IRGTLSPKDALTDLTGDAERLPVEGHHGTWLGHKGMVLSAEYIKKKLEQEMVLSQAFGRD 410 420 430 440 450 460 130 140 150 FLJ003 NGRGVKELGLWVTKHSDCAWSSLALTKGHPDT :::.:. :: :. :: : .. :. KIAA06 LGRGTKHYGLIVVGHSLGAGTAAILSFLLRPQYPTLKCFAYSPPGGLLSEDAMEYSKEFV 470 480 490 500 510 520 >>KIAA0323 ( 724 res) hg00467 (724 aa) initn: 34 init1: 34 opt: 86 Z-score: 92.0 bits: 25.4 E(): 6.3 Smith-Waterman score: 86; 29.204% identity (55.752% similar) in 113 aa overlap (19-130:158-264) 10 20 30 40 FLJ003 AQCGSPHRLVLVESIPQDLPSAAGSPSAQPLGQAWLQLLDTAQETVHV .: : :: . : .:... . ..: .. KIAA03 IHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPRAPGSLMISGLTEAFVMAQSRVEELAER 130 140 150 160 170 180 50 60 70 80 90 100 FLJ003 ASYYWSLT-GPDIGVNDSSSQLVRPALAPPHPGAGNTASQAAYLCRRLGHQARGLSLVVG : :..: ::. :... .. : . :: : . : : :. : . :::: KIAA03 LS--WDFTPGPSSGASQCTGVLRDFSALLQSPG---DAHREALLQLPLAVQEELLSLVQE 190 200 210 220 230 240 110 120 130 140 150 FLJ003 SSMEQGLGRSFGGSNGRGVKELGLWVTKHSDCAWSSLALTKGHPDT .: :: : .... .::. :: KIAA03 ASSGQGPG-ALASWEGRSSALLGAQCQGVRAPPSDGRESLDTGSMGPGDCRGARGDTYAV 250 260 270 280 290 300 >>KIAA1637 ( 479 res) fj00747s1 (479 aa) initn: 71 init1: 71 opt: 82 Z-score: 89.9 bits: 24.4 E(): 8.2 Smith-Waterman score: 82; 24.771% identity (56.881% similar) in 109 aa overlap (17-124:312-415) 10 20 30 40 FLJ003 AQCGSPHRLVLVESIPQDLPSAAGSPSAQPLGQAWLQLLDTAQETV : ::::. .::: : .: :: . . KIAA16 LPGPISRQPLGATSGASLKTQPSSQPLQSGQVLPSATPTPSAPPTSQQELQAKILSLFNS 290 300 310 320 330 340 50 60 70 80 90 100 FLJ003 HVASYYWSLTGPDIGVNDSSSQ-LVRPALAPPHPGAGNTASQAAYLCRRLGHQARGLSLV ... : ..:....... .: . : . :. . ...: . . : .:.... KIAA16 GTVTANSSSASPSVAAGNTPNQNFSTAANSQPQQRSQASGNQPPSILGQ-GGSAQNMGPR 350 360 370 380 390 400 110 120 130 140 150 FLJ003 VGSSMEQGLGRSFGGSNGRGVKELGLWVTKHSDCAWSSLALTKGHPDT :. ::: :: ..: KIAA16 PGAP-SQGL---FGQPSSRLAPASNMTSQRPVSSTGINFDNPSVQKALDTLIQSGPALSH 410 420 430 440 450 >>FLJ00056 ( 1310 res) as00056 (1310 aa) initn: 79 init1: 49 opt: 86 Z-score: 89.3 bits: 25.7 E(): 8.9 Smith-Waterman score: 91; 32.609% identity (56.522% similar) in 92 aa overlap (14-103:1224-1304) 10 20 30 40 FLJ003 AQCGSPHRLVLVESIPQDLPSAAGSPSAQPLGQAWLQLLDTAQ :.: :.: . : :. .:: ::. : FLJ000 GERTLSALLTGRAARTRASVAVSSFEHAGPSLPGLSPGACSLP-ARVEEEAW--DLDVKQ 1200 1210 1220 1230 1240 1250 50 60 70 80 90 100 FLJ003 ETVHVASYYWSLTGPDIGVNDSSSQLVRPALAPPHPGAGNT--ASQAAYLCRRLGHQARG . .: . .: :.. . .: :.: :::::... ::.. : .: ::. FLJ000 --ISLAPETLDSSG-DVSPGPRNS----PSLQPPHPGSSTPTLASRGILGLSRQSH-ARA 1260 1270 1280 1290 1300 110 120 130 140 150 FLJ003 LSLVVGSSMEQGLGRSFGGSNGRGVKELGLWVTKHSDCAWSSLALTKGHPDT :: FLJ000 LSDPTTPL 1310 >>KIAA0644 ( 887 res) hj03618 (887 aa) initn: 70 init1: 44 opt: 84 Z-score: 89.1 bits: 25.1 E(): 9.1 Smith-Waterman score: 84; 27.273% identity (52.273% similar) in 88 aa overlap (5-88:494-581) 10 20 30 FLJ003 AQCGSPHRLVLVESIPQDLPSAAGSPSAQPLGQA :: . .. : ::.::: . : : : KIAA06 VQCRHPPALRGKYLDYLDDQQLQNGSCADPSPSASLTADRRRQPLPTAAGEEMTPPAGLA 470 480 490 500 510 520 40 50 60 70 80 90 FLJ003 WL--QLLDTAQETVHVASYYWSLTGPDIGVNDSSSQLVR--PALAPPHPGAGNTASQAAY . :. .:. :. .. .. : :. .: : :.: : :... .:. : KIAA06 EELPPQPQLQQQGRFLAGVAWDGAARELVGNRSALRLSRRGPGLQQPSPSVAAAAGPAPQ 530 540 550 560 570 580 100 110 120 130 140 150 FLJ003 LCRRLGHQARGLSLVVGSSMEQGLGRSFGGSNGRGVKELGLWVTKHSDCAWSSLALTKGH KIAA06 SLDLHKKPQRGRPTRADPALAEPTPTASPGSAPSPAGDPWQRATKHRLGTEHQERAAQSD 590 600 610 620 630 640 >>KIAA1442 ( 627 res) hh10127b (627 aa) initn: 79 init1: 54 opt: 82 Z-score: 88.7 bits: 24.5 E(): 9.6 Smith-Waterman score: 82; 32.051% identity (52.564% similar) in 78 aa overlap (60-131:511-579) 30 40 50 60 70 80 FLJ003 PLGQAWLQLLDTAQETVHVASYYWSLTGPDIGVNDSSSQL---VRPALAPPHPGAGNTAS .:.: :: : : : :.:: . . : KIAA14 AADVAEALYSTPRAPGPLAPLAPSHPHSAVVGINAFSSPLAIAVGDATPGPEPGYARSCS 490 500 510 520 530 540 90 100 110 120 130 140 FLJ003 QAAYLCRRLGHQARGLSLVVGSSMEQ---GLGRSFGGSNGRGVKELGLWVTKHSDCAWSS .:. ::.. ::.. ::: ..:: .. :: ::. KIAA14 SAS---------PRGFAPSPGSQQSGYGGGLGAGLGGYGAPGVAGLGVPGSPSFLNGSTA 550 560 570 580 590 150 FLJ003 LALTKGHPDT KIAA14 TSPFAKERLRPRAAPPKLPTPGLPQSPRRGASRPVF 600 610 620 >>FLJ00128 ( 1546 res) sh01521 (1546 aa) initn: 79 init1: 49 opt: 86 Z-score: 88.6 bits: 25.8 E(): 9.8 Smith-Waterman score: 91; 32.609% identity (56.522% similar) in 92 aa overlap (14-103:1460-1540) 10 20 30 40 FLJ003 AQCGSPHRLVLVESIPQDLPSAAGSPSAQPLGQAWLQLLDTAQ :.: :.: . : :. .:: ::. : FLJ001 GERTLSALLTGRAARTRASVAVSSFEHAGPSLPGLSPGACSLP-ARVEEEAW--DLDVKQ 1430 1440 1450 1460 1470 1480 50 60 70 80 90 100 FLJ003 ETVHVASYYWSLTGPDIGVNDSSSQLVRPALAPPHPGAGNT--ASQAAYLCRRLGHQARG . .: . .: :.. . .: :.: :::::... ::.. : .: ::. FLJ001 --ISLAPETLDSSG-DVSPGPRNS----PSLQPPHPGSSTPTLASRGILGLSRQSH-ARA 1490 1500 1510 1520 1530 110 120 130 140 150 FLJ003 LSLVVGSSMEQGLGRSFGGSNGRGVKELGLWVTKHSDCAWSSLALTKGHPDT :: FLJ001 LSDPTTPL 1540 153 residues in 1 query sequences 2210841 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:02:04 2009 done: Fri Feb 27 11:02:05 2009 Total Scan time: 0.340 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]