# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh06688.fasta.huge -Q ../query/FLJ00161.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00161, 596 aa vs ./tmplib.10216 library 2210398 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.3950+/-0.00411; mu= 19.9485+/- 0.277 mean_var=99.2203+/-21.848, 0's: 0 Z-trim: 2 B-trim: 0 in 0/40 Lambda= 0.128758 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00339 ( 472 res) sj06421 ( 472) 568 115.7 1e-26 FLJ00157 ( 474 res) sh06561 ( 474) 149 37.9 0.0027 KIAA0092 ( 475 res) ha01343 ( 475) 104 29.5 0.9 KIAA0113 ( 636 res) ha01652s1 ( 636) 101 29.2 1.6 KIAA1592 ( 717 res) fj09188 ( 717) 99 28.9 2.2 FLJ00236 ( 702 res) sj07289 ( 702) 90 27.2 6.8 FLJ00120 ( 1171 res) as00120 (1171) 90 27.5 9.1 KIAA0395 ( 1003 res) fg04028s1 (1003) 89 27.2 9.5 FLJ00051 ( 462 res) as00051 ( 462) 84 25.8 12 FLJ00073 ( 462 res) as00073 ( 462) 84 25.8 12 KIAA1351 ( 1243 res) fj01021s1 (1243) 88 27.2 12 FLJ00413 ( 308 res) sg00013 ( 308) 80 24.8 15 KIAA0625 ( 2663 res) hg04796s1 (2663) 89 27.8 16 FLJ00085 ( 292 res) as00085 ( 292) 79 24.6 17 FLJ00068 ( 1194 res) as00068 (1194) 85 26.6 18 FLJ00055 ( 977 res) as00055 ( 977) 84 26.3 18 KIAA1794 ( 802 res) fj08520 ( 802) 83 26.0 18 KIAA0165 ( 2093 res) ha02421 (2093) 87 27.3 19 KIAA0288 ( 1097 res) ha06116(revised) (1097) 84 26.3 19 FLJ00062 ( 484 res) as00062 ( 484) 80 25.1 20 KIAA1262 ( 1362 res) hh15990 (1362) 84 26.5 21 KIAA1440 ( 1377 res) hg02441b (1377) 84 26.5 22 KIAA0197 ( 1314 res) ha03030 (1314) 83 26.3 24 FLJ00018 ( 1430 res) as00018 (1430) 83 26.3 25 FLJ00199 ( 383 res) sj03574 ( 383) 77 24.4 26 KIAA0234 ( 1512 res) ha02764 (1512) 83 26.3 26 KIAA0485 ( 83 res) hg00837 ( 83) 70 22.1 27 KIAA0135 ( 1351 res) ha01203s1 (1351) 82 26.1 27 KIAA1755 ( 1110 res) fg04230(revised) (1110) 81 25.8 28 KIAA0912 ( 1300 res) hk03560(revised) (1300) 81 25.9 31 KIAA0577 ( 1043 res) hj00291 (1043) 80 25.6 31 KIAA0889 ( 535 res) hk08008 ( 535) 77 24.6 31 KIAA0881 ( 1064 res) hk07534 (1064) 80 25.6 31 KIAA1225 ( 1371 res) fh04221s1 (1371) 81 25.9 31 FLJ00269 ( 1383 res) sj06049 (1383) 81 25.9 32 KIAA1620 ( 1398 res) hj04150 (1398) 81 25.9 32 KIAA0269 ( 567 res) ha06751 ( 567) 77 24.6 32 KIAA1614 ( 1208 res) fj12973 (1208) 80 25.7 33 KIAA0309 ( 3053 res) hg00096s1 (3053) 84 27.0 34 KIAA1270 ( 986 res) hk06471 ( 986) 79 25.3 34 KIAA1692 ( 855 res) fj05607 ( 855) 78 25.1 35 FLJ00375 ( 708 res) sh07824 ( 708) 77 24.8 36 FLJ00361 ( 366 res) sh04352 ( 366) 74 23.8 37 KIAA0409 ( 464 res) hg01499 ( 464) 75 24.1 37 KIAA1641 ( 718 res) fj10609s1 ( 718) 76 24.6 41 KIAA0903 ( 962 res) hk09970 ( 962) 77 25.0 43 KIAA1405 ( 993 res) fg03134s1 ( 993) 77 25.0 44 KIAA1346 ( 999 res) fj00671 ( 999) 77 25.0 44 FLJ00386 ( 811 res) sj04204 ( 811) 76 24.7 44 KIAA0400 ( 1022 res) hg01091 (1022) 77 25.0 45 >>FLJ00339 ( 472 res) sj06421 (472 aa) initn: 535 init1: 425 opt: 568 Z-score: 573.0 bits: 115.7 E(): 1e-26 Smith-Waterman score: 595; 27.949% identity (62.308% similar) in 390 aa overlap (64-430:72-458) 40 50 60 70 80 FLJ001 ELPFFQGLDLLFEALGQAVEAAAGAAGKLAREDPALLVAAVRVAEVET-------GRTTP :.::.:::..::. : : : FLJ003 IHGYFGSTQGLSDELAKQLWMVLQRSLVTVRRDPTLLVSVVRIIEREEKIDRRILDRKKQ 50 60 70 80 90 100 90 100 110 120 130 FLJ001 LGQVP----RDWRQRCLRALQEGLEQAHFGSPLLPAPGALPGWL----EALRVALPVELA : :: ..:... . :.. . :. . . :: : .: . .: FLJ003 TGFVPPGRPKNWKEKMFTILERTVTTRIEGTQA-DTRESDKMWLVRHLEIIRKYVLDDLI 110 120 130 140 150 160 140 150 160 170 180 190 FLJ001 TAEALVAPCCPPQYNVVQLWAHTLHSGLRRSLQNLLAGPELEAADAFALLHWALHVYLGQ .:. :.. : ::.:.. . . :..: .:.: :. .::: . .:: :.:..: . FLJ003 VAKNLMVQCFPPHYEIFKNLLNMYHQALSTRMQDL-ASEDLEANEIVSLLTWVLNTYTST 170 180 190 200 210 200 210 220 230 240 250 FLJ001 EMMGSLELGPEADVSQLEPLLTLENIEQLEATFVANIQASVSQWLQNALDGEVAEWGREH ::: ..::.::.::. :::::. . . .: :..... ... ::..::. . .: .: FLJ003 EMMRNVELAPEVDVGTLEPLLSPHVVSELLDTYMSTLTSNIIAWLRKALETDKKDWVKET 220 230 240 250 260 270 260 270 280 290 300 310 FLJ001 GPNTDPSGSYYSPMPAIVLQILEENIRVASLVSESLQQRVHGMALSELGTFLRSFSDALI :..: .: : . .::::.:..:.:..::. .::.:. .: . :.....:: ..: FLJ003 EPEADQDGYYQTTLPAIVFQMFEQNLQVAAQISEDLKTKVLVLCLQQMNSFLSRYKDEAQ 280 290 300 310 320 330 320 330 340 350 360 370 FLJ001 RFSRDHFRGKSMAPH-YVPYLLAALNHKSALGSSVSVLQ---LDGAPSGALAPVEAALDE ....:.:... :: :: :..: .:. ... :. :. : . ...: . ..: FLJ003 LYKEEHLRNRQH-PHCYVQYMIAIINNCQTFKESIVSLKRKYLKNEVEEGVSPSQPSMDG 340 350 360 370 380 390 380 390 400 410 420 430 FLJ001 LQRRIYRL----VLEALQAELQPLFADLPSRQWLSSPELLQSVCERTGRFCRDFWRVRNP . : . .:: . .:. . .: ...:: . . .. .: . . :: ....: FLJ003 ILDAIAKEGCSGLLEEVFLDLEQHLNELMTKKWLLGSNAVDIICVTVEDYFNDFAKIKKP 400 410 420 430 440 450 440 450 460 470 480 490 FLJ001 TVQLLLAEAERAVVLQYLSALMQGRLVCRGADERTQAAERLRHDAAQLQQLFLSLGLEEN FLJ003 YKKVRRWDLVPSSS 460 470 >>FLJ00157 ( 474 res) sh06561 (474 aa) initn: 131 init1: 64 opt: 149 Z-score: 152.4 bits: 37.9 E(): 0.0027 Smith-Waterman score: 181; 25.455% identity (50.909% similar) in 220 aa overlap (1-195:142-359) 10 20 FLJ001 QTLIDGQQFLEAYVSLRELE---------Q : ::. .:.:. .: .:: : FLJ001 KDAVVQHSQLAAAVENLKNIFSVPEIVRETQDLIEQGALLQAHRKLMDLECSRDGLMYEQ 120 130 140 150 160 170 30 40 50 60 70 80 FLJ001 LREDTWAPLG-GLELPFFQGLDLLFEALGQAVEAAAGAAGKLAREDPALLVAAVRVAEVE : :. : .: . . : . :.. . . . .:.::.:::..::. : : FLJ001 YRMDSGNTRDMTLIHGYFGSTQGLSDELAKQLWMVLQRSLVTVRRDPTLLVSVVRIIERE 180 190 200 210 220 230 90 100 110 120 FLJ001 T-------GRTTPLGQVP----RDWRQRCLRALQEGLEQAHFGSPLLPAPGALPGWL--- : : :: ..:... . :.. . :. . :: FLJ001 EKIDRRILDRKKQTGFVPPGRPKNWKEKMFTILERTVTTRIEGTQADTRESD-KMWLVRH 240 250 260 270 280 290 130 140 150 160 170 180 FLJ001 -EALRVALPVELATAEALVAPCCPPQYNVVQLWAHTLHSGLRRSLQNLLAGPELEAADAF : .: . .: .:. :.. : ::.:.. . . :..: .:.: :. .::: . FLJ001 LEIIRKYVLDDLIVAKNLMVQCFPPHYEIFKNLLNMYHQALSTRMQDL-ASEDLEANEIV 300 310 320 330 340 190 200 210 220 230 240 FLJ001 ALLHWALHVYLGQEMMGSLELGPEADVSQLEPLLTLENIEQLEATFVANIQASVSQWLQN .:: :.:..: FLJ001 SLLTWVLNTYTRYKDEAQLYKEEHLRNRQHPHCYVQYMIAIINNCQTFKESIVSLKRKYL 350 360 370 380 390 400 >>KIAA0092 ( 475 res) ha01343 (475 aa) initn: 66 init1: 66 opt: 104 Z-score: 107.2 bits: 29.5 E(): 0.9 Smith-Waterman score: 104; 26.812% identity (57.246% similar) in 138 aa overlap (361-492:63-197) 340 350 360 370 380 390 FLJ001 APHYVPYLLAALNHKSALGSSVSVLQLDGAPSGALAPVEAALDELQRRIYRLVLEALQAE : . . .:: .:: .: :: :: .::: KIAA00 SSSPYVVYPSDKPFLNSDLRRSPSKPTLAYPESNSRAIFSALKNLQDKIRRLELERIQAE 40 50 60 70 80 90 400 410 420 430 440 FLJ001 LQPLFADLPSRQWLSSPELL-QSVCERTGRFCRDFWRVRNPTVQLLLAEAERAVV---LQ . . ::. . ..: ... :: . .. . .. : ::: :: . .. :. KIAA00 ES---VKTLSRETIEYKKVLDEQIQERENSKNEESKHNQELTSQLLAAENKCNLLEKQLE 100 110 120 130 140 450 460 470 480 490 500 FLJ001 YLSALMQGRLVCR-GADERTQAAERLR-HDAAQLQQLFLSLGLEENAHCAPVLLALRELL :. ... . : .. :. . :: : :: ...:. . .: : :. . KIAA00 YMRNMIKHAEMERTSVLEKQVSLERERQHDQTHVQSQLEKLDLLEQEYNKLTTMQALAEK 150 160 170 180 190 200 510 520 530 540 550 560 FLJ001 NLRDPALLGLEVAGLRQQFPDVSEDHVSALLGLRGDLSREQHLAALSSLQAALPPSPRAS KIAA00 KMQELEAKLHEEEQERKRMQAKAAELQTGLETNRLIFEDKATPCVPNARRIKKKKSKPPE 210 220 230 240 250 260 >>KIAA0113 ( 636 res) ha01652s1 (636 aa) initn: 137 init1: 78 opt: 101 Z-score: 102.9 bits: 29.2 E(): 1.6 Smith-Waterman score: 101; 43.243% identity (75.676% similar) in 37 aa overlap (459-495:228-264) 430 440 450 460 470 480 FLJ001 NPTVQLLLAEAERAVVLQYLSALMQGRLVCRGADERTQAAERLRHDAAQLQQLFLSLGLE .: ..: :::::::.. .:..:..: : . KIAA01 VHKNEQRTSILQTLCEQLRKENEALKAKLDKGLEQRDQAAERLREENLELKKLLMSNGNK 200 210 220 230 240 250 490 500 510 520 530 540 FLJ001 ENAHCAPVLLALRELLNLRDPALLGLEVAGLRQQFPDVSEDHVSALLGLRGDLSREQHLA :.: : KIAA01 EGASGRPGSPKMEGTGKKAVAGQQQASVTAGKVPEVVALGAAEKKVKMLEQQRSELLEVN 260 270 280 290 300 310 >>KIAA1592 ( 717 res) fj09188 (717 aa) initn: 55 init1: 55 opt: 99 Z-score: 100.4 bits: 28.9 E(): 2.2 Smith-Waterman score: 99; 31.818% identity (52.273% similar) in 132 aa overlap (344-467:45-171) 320 330 340 350 360 FLJ001 SDALIRFSRDHFRGKSMAPHYVPYLLAALNHKSA----LGSSVSVLQLDGAPSGALAPVE :::. : ... : :: .. : . : KIAA15 TVNLRLYGYSLGNISSNLISFTEVDDAETLHKSTSCLELTKDLVVQQLVNVSRGNTSGVL 20 30 40 50 60 70 370 380 390 400 410 420 FLJ001 AALDELQRRIYRLVLEALQAELQPLFADLPSRQWLSSPELLQSVCERTGRFCRDFWRVRN ..: .. :: . : :: .. :: : : .: .. :: : :. ::: . .. KIAA15 VVLTKFLRRSESMKLYALCTRAQP---DGPWLKWTDKDSLLFMV-EEPGRFLPLWLHILL 80 90 100 110 120 130 430 440 450 460 470 480 FLJ001 PTVQLLLAEAERAVVLQYLSAL--MQGRLV--CRGADERTQAAERLRHDAAQLQQLFLSL :: :.:. .. : : :: :. :.: : :: : KIAA15 ITVLLVLSGIFSGLNLG-LMALDPMELRIVQNCGTEKERRYARKIEPIRRKGNYLLCSLL 140 150 160 170 180 490 500 510 520 530 540 FLJ001 GLEENAHCAPVLLALRELLNLRDPALLGLEVAGLRQQFPDVSEDHVSALLGLRGDLSREQ KIAA15 LGNVLVNTSLTILLDNLIGSGLMAVASSTIGIVIFGEILPQALCSRHGLAVGANTILLTK 190 200 210 220 230 240 >>FLJ00236 ( 702 res) sj07289 (702 aa) initn: 126 init1: 71 opt: 90 Z-score: 91.4 bits: 27.2 E(): 6.8 Smith-Waterman score: 90; 32.941% identity (54.118% similar) in 85 aa overlap (67-150:529-606) 40 50 60 70 80 90 FLJ001 FFQGLDLLFEALGQAVEAAAGAAGKLAREDPALLVAAVRVAEVETGRTTPLGQVPRDWRQ :: : . :.. . ..:: :: .. FLJ002 PQLAQLSSPCSSSDSLCSRRGLSSPRLSLAPAEAWKAKKKQELQHANSSPLL---RDSHS 500 510 520 530 540 550 100 110 120 130 140 150 FLJ001 RCLRALQEGLEQAHFGSP-LLPAPGALPGWLEALRVALPVELATAEALVAPCCPPQYNVV ::: . : . :: : .:::.: : : :. : :.... ::. :: FLJ002 LELRACELG----NRGSKNLSQSPGAVPQALVAWRALGPKLLSSSNELVTRHLPPAPLFP 560 570 580 590 600 610 160 170 180 190 200 210 FLJ001 QLWAHTLHSGLRRSLQNLLAGPELEAADAFALLHWALHVYLGQEMMGSLELGPEADVSQL FLJ002 HETPPTQSQQTQPPVAPQAPSSILLPAAPIPILSPCSPPSPQASSLSGPSPASSRLSSSS 620 630 640 650 660 670 >>FLJ00120 ( 1171 res) as00120 (1171 aa) initn: 51 init1: 51 opt: 90 Z-score: 89.2 bits: 27.5 E(): 9.1 Smith-Waterman score: 90; 38.235% identity (55.882% similar) in 68 aa overlap (374-441:335-394) 350 360 370 380 390 400 FLJ001 HKSALGSSVSVLQLDGAPSGALAPVEAALDELQRRIYRLVLEALQAELQPLFADLPSRQW :: ::: : :: ::: .: .. . FLJ001 QAGKRSLPDSDKAILDILEHDRKEALEDRQELVNRIYNLQEEARQAE------ELRDK-Y 310 320 330 340 350 410 420 430 440 450 460 FLJ001 LSSPELLQSVCERTGRFCRDFWRVRNPTVQLLLAEAERAVVLQYLSALMQGRLVCRGADE : : :. : :. : .... : ::.: : :.:: FLJ001 LEEKEDLELKCSTLGKDC-EMYKHRMNTVMLQLEEVERERDQAFHSRDEAQTQYSQCLIE 360 370 380 390 400 410 470 480 490 500 510 520 FLJ001 RTQAAERLRHDAAQLQQLFLSLGLEENAHCAPVLLALRELLNLRDPALLGLEVAGLRQQF FLJ001 KDKYRKQIRELEEKNDEMRIEMVRREACIVNLESKLRRLSKDSNNLDQSLPRNLPVTIIS 420 430 440 450 460 470 >>KIAA0395 ( 1003 res) fg04028s1 (1003 aa) initn: 39 init1: 39 opt: 89 Z-score: 88.8 bits: 27.2 E(): 9.5 Smith-Waterman score: 89; 28.947% identity (59.211% similar) in 76 aa overlap (520-588:562-634) 490 500 510 520 530 540 FLJ001 NAHCAPVLLALRELLNLRDPALLGLEVAGLRQQFPDVSE-DHVSALLGL-----RGDLS- :.::: :: .:.. . :: : .: KIAA03 SITSQAFLDASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSD 540 550 560 570 580 590 550 560 570 580 590 FLJ001 REQHLAALSSLQAALPPSPRASRRVLFSLVPAPALAPASCLPSGSCARALLLAE :. : :.. .: .: . . .... :: ...:.: .: .: KIAA03 RRYHCRNLKGSRAMIPGDHSS---IIIDSVPEVSFSPSSKVPEVTCIPTTATLATHPSAK 600 610 620 630 640 KIAA03 RQSWHQTPDFTPTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFS 650 660 670 680 690 700 >>FLJ00051 ( 462 res) as00051 (462 aa) initn: 81 init1: 57 opt: 84 Z-score: 87.2 bits: 25.8 E(): 12 Smith-Waterman score: 86; 30.894% identity (48.780% similar) in 123 aa overlap (61-175:15-127) 40 50 60 70 80 FLJ001 GGLELPFFQGLDLLFEALGQAVEAAAGAAGKLAREDPALLVAAVRVAEV-ETGRTTPLGQ .:: . :.:. .: : .: : : FLJ000 LALVLCTVDSRPPAQLALSHAGRLLASSTAASVPNTLRLELRGP 10 20 30 40 90 100 110 120 130 140 FLJ001 VPRDWRQRCLRALQEGLEQAHFGSPLLPAPGALPGWLEALRVALPVELATAEA--LVAPC ::: ::. . ::: : .: ::..:: : : :. :. ... : FLJ000 QPRD----------EGFYSCSARSPLGQANTSLELRLEGVRVILAPEAAVPEGAPITVTC 50 60 70 80 90 150 160 170 180 190 200 FLJ001 CPPQYNVVQL--WAHT---LHSGLRRSLQNLLAGPELEAADAFALLHWALHVYLGQEMMG : .. : : :. :. : ::. :.: FLJ000 ADPAAHAPTLYTWYHNGRWLQEGPAASLSFLVATRAHAGAYSCQAQDAQGTRSSRPAALQ 100 110 120 130 140 150 210 220 230 240 250 260 FLJ001 SLELGPEADVSQLEPLLTLENIEQLEATFVANIQASVSQWLQNALDGEVAEWGREHGPNT FLJ000 VLYAPQDAVLSSFRDSRARSMAVIQCTVDSEPPAELALSHDGKVLATSSGVHSLASGTGH 160 170 180 190 200 210 >>FLJ00073 ( 462 res) as00073 (462 aa) initn: 81 init1: 57 opt: 84 Z-score: 87.2 bits: 25.8 E(): 12 Smith-Waterman score: 86; 30.894% identity (48.780% similar) in 123 aa overlap (61-175:15-127) 40 50 60 70 80 FLJ001 GGLELPFFQGLDLLFEALGQAVEAAAGAAGKLAREDPALLVAAVRVAEV-ETGRTTPLGQ .:: . :.:. .: : .: : : FLJ000 LALVLCTVDSRPPAQLALSHAGRLLASSTAASVPNTLRLELRGP 10 20 30 40 90 100 110 120 130 140 FLJ001 VPRDWRQRCLRALQEGLEQAHFGSPLLPAPGALPGWLEALRVALPVELATAEA--LVAPC ::: ::. . ::: : .: ::..:: : : :. :. ... : FLJ000 QPRD----------EGFYSCSARSPLGQANTSLELRLEGVRVILAPEAAVPEGAPITVTC 50 60 70 80 90 150 160 170 180 190 200 FLJ001 CPPQYNVVQL--WAHT---LHSGLRRSLQNLLAGPELEAADAFALLHWALHVYLGQEMMG : .. : : :. :. : ::. :.: FLJ000 ADPAAHAPTLYTWYHNGRWLQEGPAASLSFLVATRAHAGAYSCQAQDAQGTRSSRPAALQ 100 110 120 130 140 150 210 220 230 240 250 260 FLJ001 SLELGPEADVSQLEPLLTLENIEQLEATFVANIQASVSQWLQNALDGEVAEWGREHGPNT FLJ000 VLYAPQDAVLSSFRDSRARSMAVIQCTVDSEPPAELALSHDGKVLATSSGVHSLASGTGH 160 170 180 190 200 210 596 residues in 1 query sequences 2210398 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:42:33 2009 done: Fri Feb 27 10:42:34 2009 Total Scan time: 0.640 Total Display time: 0.090 Function used was FASTA [version 34.26.5 April 26, 2007]