hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/shimazu/full/sh/sh06537/interpro/cnk_1/seq.in
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Query:  sh06537  1651

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGEF   Guanine nucleotide exchange factor for Rho/R   208.2    7.2e-58   1
SH3      Src homology 3 domains                          65.3    7.7e-15   1
PH       Pleckstrin homology domain.                     37.5    1.9e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGEF     1/1    1232  1411 ..     1   211 []   208.2  7.2e-58
PH         1/1    1445  1558 ..     1    82 []    37.5  1.9e-06
SH3        1/1    1567  1624 ..     1    58 []    65.3  7.7e-15

Alignments of top-scoring domains:
RhoGEF: domain 1 of 1, from 1232 to 1411: score 208.2, E = 7.2e-58
                   *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl
                      v +EL+++E++Y+r+L+i+v++f+   + +a       ls++e+++l
     sh06537  1232    VKFELIVSEASYLRSLNIAVDHFQLSTSLRA------TLSNQEHQWL 1272 

                   FgpNieeiyefHrrFLdeLeerveewllskdlKsernsviedsgerigdv
                   F+ +++++ +++ +FL +Lee  e+                  + +++dv
     sh06537  1273 FS-RLQDVRDVSATFLSDLEENFENN---------------IFSFQVCDV 1306 

                   FlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeiesk
                    l++  a++f ++Y +Y+ n+++++++++ Lm  ++n++F+++l+++es+
     sh06537  1307 VLNH--APDFRRVYLPYVTNQTYQERTFQSLM--NSNSNFREVLEKLESD 1352 

                   pncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLkk
                   p+c+     rl+L+s+Li+P+QR+t+ +LLL+++lk t+p++++  +++k
     sh06537  1353 PVCQ-----RLSLKSFLILPFQRITRLKLLLQNILKRTQPGSSEEAEATK 1397 

                   AleaikelasqvNe<-*
                   A++a+++l++++N    
     sh06537  1398 AHHALEQLIRDCNN    1411 

PH: domain 1 of 1, from 1445 to 1558: score 37.5, E = 1.9e-06
                   *->vikeGwLlkks.........k.swkkryfvLfngvLlyyksk.....
                      ++k+G L+ ++ + +++ ++k + +++++ Lfn++Ll+ +++++++ 
     sh06537  1445    LVKSGELTALEfsaspglrrKlNTRPVHLHLFNDCLLLSRPRegsrf 1491 

                   ...kpkgsipLsgcsvre.p......cFeivt.dr......tlllqAese
                      ++ ++ +++g +++++ ++++++ F+++ ++++++ + ++l+++e++
     sh06537  1492 lvfDHAPFSSIRGEKCEMkLhgphknLFRLFLrQNtqgaqaEFLFRTETQ 1541 

                   eereeWvealqsaiaka<-*
                   +e+ +W++al +  +++   
     sh06537  1542 SEKLRWISALAMPREEL    1558 

SH3: domain 1 of 1, from 1567 to 1624: score 65.3, E = 7.7e-15
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG
                      ++v+ l +y++++ dEL ++k D++ v+++s+dgW+eG + ++G++G
     sh06537  1567    PQVQCLRAYKPRENDELALEKADVVMVTQQSSDGWLEGVRLSDGERG 1613 

                   lfPsnYVeeie<-*
                   +fP   Ve i    
     sh06537  1614 WFPVQQVEFIS    1624 

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