hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan_v890/data/smart.HMMs
Sequence file:            /cdna4/shimazu/full/sh/sh06477/interpro/cnk_1/seq.in
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Query:  sh06477  1887

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                    80.3    2.4e-19   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/4    1632  1672 ..     1    46 []    10.2       12
WD40       2/4    1682  1721 ..     1    46 []    39.1  5.9e-07
WD40       3/4    1724  1762 ..     1    46 []    15.0        2
WD40       4/4    1764  1811 ..     1    46 []    24.1    0.019

Alignments of top-scoring domains:
WD40: domain 1 of 4, from 1632 to 1672: score 10.2, E = 12
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++k+l+t++   +  + ++++    +     p+ ++++++   +++W
     sh06477  1632    SdKVLMTFENLAA--WGRCLCAVCPS-----PTTIVTSGtSTVVCVW 1671 

                   d<-*
                   +   
     sh06477  1672 E    1672 

WD40: domain 2 of 4, from 1682 to 1721: score 39.1, E = 5.9e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                        +l + l gHt+  +Vt++a s +       +ll+sgs+D+t+ lW
     sh06477  1682    GlRLRQALYGHTQ--AVTCLAASVTF------SLLVSGSqDCTCILW 1720 

                   d<-*
                   d   
     sh06477  1721 D    1721 

WD40: domain 3 of 4, from 1724 to 1762: score 15.0, E = 2
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                        + +  l++H+   +++++++s+ +        ++s+ + + + lW
     sh06477  1724    HlTHVTRLPAHRE--GISAITISDVS------GTIVSCAgAH-LSLW 1761 

                   d<-*
                   +   
     sh06477  1762 N    1762 

WD40: domain 4 of 4, from 1764 to 1811: score 24.1, E = 0.019
                   *->t.kllrtlk...gHtgespVtsvafspdggssdspnllasgs.Dgti
                      ++++l+++++  g +g  ++t+++        d ++++++gs+Dg +
     sh06477  1764    NgQPLASITtawGPEG--AITCCCLMEGPAW-DTSQIIITGSqDGMV 1807 

                   rlWd<-*
                   r+W+   
     sh06477  1808 RVWK    1811 

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