hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan_v890/data/Pfam
Sequence file:            /cdna4/shimazu/full/sh/sh06477/interpro/cnk_1/seq.in
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Query:  sh06477  1887

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Beach    Beige/BEACH domain                             621.9   3.8e-183   1
WD40     WD domain, G-beta repeat                        75.4    1.1e-18   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Beach      1/1    1250  1532 ..     1   287 []   621.9 3.8e-183
WD40       1/4    1634  1672 ..     1    37 []     9.1       11
WD40       2/4    1684  1721 ..     1    37 []    36.9  4.7e-07
WD40       3/4    1726  1762 ..     1    37 []    14.9      1.9
WD40       4/4    1769  1811 ..     1    37 []    25.6   0.0011

Alignments of top-scoring domains:
Beach: domain 1 of 1, from 1250 to 1532: score 621.9, E = 3.8e-183
                   *->TkRWqrGeISNFeYLmhLNtlAGRsyNDLsQYPVFPWIlADYtSesL
                       ++Wq++ ISNFeYLm LNt AGR++ND +QYPVFPW+lADYtSe+L
     sh06477  1250    LQKWQKRDISNFEYLMYLNTAAGRTCNDYMQYPVFPWVLADYTSETL 1296 

                   DLsnPstFRdLSKPiGAQspeReeqFleRYesledpeekevppFHYGtHY
                    L nP++FRdLSKP+GAQ++eR+ +F+ R+++ e  e   + + HY tHY
     sh06477  1297 NLANPKIFRDLSKPMGAQTKERKLKFIQRFKEVEKTEGDMTVQCHYYTHY 1346 

                   SSagiVlfYLiRlePFteefLaLQgGkFDhADRlFhSieetWrsaslenm
                   SSa iV +YL+R++PFt+ f aLQgG+FD ADR+FhS+++tW sas+enm
     sh06477  1347 SSAIIVASYLVRMPPFTQAFCALQGGSFDVADRMFHSVKSTWESASRENM 1396 

                   tDVKELIPEFFyLPEfLvNrngfDlGvrQnGekVnDVdLPPWAkgDEKAd
                   +DV+EL+PEFFyLPEfL+N ng  +G +Q+G++++DV LPPWA g    d
     sh06477  1397 SDVRELTPEFFYLPEFLTNCNGVEFGCMQDGTVLGDVQLPPWADG----D 1442 

                   PeeFiqkhReALESdYVSahLHeWIDLIFGYKQrGkeAvkAiNVFhhltY
                   P+ Fi +hR ALESd+VSa+LH+WIDLIFGYKQ+G++Av+A+N+Fh+++Y
     sh06477  1443 PRKFISLHRKALESDFVSANLHHWIDLIFGYKQQGPAAVDAVNIFHPYFY 1492 

                   eGaVDldsieDPverrAieaqIknFGQTPkQLFtkPHPkR<-*
                      +Dl+si+DP+ +  i++++ nFGQ PkQLFtkPHP R   
     sh06477  1493 GDRMDLSSITDPLIKSTILGFVSNFGQVPKQLFTKPHPAR    1532 

WD40: domain 1 of 4, from 1634 to 1672: score 9.1, E = 11
                   *->ecl.vl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++l +++   ++ +c++ + +s++++++++    +++W+   
     sh06477  1634    KVLmTFeNLAAWGRCLCAVCPSPTTIVTSGTSTVVCVWE    1672 

WD40: domain 2 of 4, from 1684 to 1721: score 36.9, E = 4.7e-07
                   *->ecl.vl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       + + l+gHt +Vtc+a s    +ll+sgS D+t+ +Wd   
     sh06477  1684    RLRqALyGHTQAVTCLAASVT-FSLLVSGSQDCTCILWD    1721 

WD40: domain 3 of 4, from 1726 to 1762: score 14.9, E = 1.9
                   *->ecl.vl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      + ++ l++H  +++++ +s   + +++s+    ++ +W+   
     sh06477  1726    THVtRLpAHREGISAITISDV-SGTIVSCAG-AHLSLWN    1762 

WD40: domain 4 of 4, from 1769 to 1811: score 25.6, E = 0.0011
                   *->ecl.vl.gHtspVtcvafspd....sgpllasgSrDgtikiWd<-*
                        +++  g ++++tc++    ++ + ++++++gS Dg +++W+   
     sh06477  1769    ASItTAwGPEGAITCCCLMEGpawdTSQIIITGSQDGMVRVWK    1811 

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