# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sh06256.fasta.nr -Q ../query/FLJ00367.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00367, 75 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7827569 sequences Expectation_n fit: rho(ln(x))= 4.8013+/-0.000178; mu= 3.8132+/- 0.010 mean_var=53.6213+/-10.490, 0's: 63 Z-trim: 64 B-trim: 0 in 0/67 Lambda= 0.175148 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|21748580|dbj|BAC03427.1| FLJ00367 protein [Homo ( 75) 484 129.4 4.9e-29 gi|119584060|gb|EAW63656.1| bridging integrator 3, ( 222) 374 101.8 2.9e-20 gi|119584058|gb|EAW63654.1| bridging integrator 3, ( 231) 374 101.9 3e-20 gi|62896499|dbj|BAD96190.1| bridging integrator 3 ( 253) 374 101.9 3.2e-20 gi|30912742|sp|Q9NQY0.1|BIN3_HUMAN RecName: Full=B ( 253) 374 101.9 3.2e-20 gi|119584055|gb|EAW63651.1| bridging integrator 3, ( 335) 374 101.9 4.1e-20 gi|119584059|gb|EAW63655.1| bridging integrator 3, ( 360) 374 102.0 4.3e-20 gi|7022451|dbj|BAA91603.1| unnamed protein product ( 199) 369 100.6 6.3e-20 gi|12654761|gb|AAH01223.1| BIN3 protein [Homo sapi ( 199) 369 100.6 6.3e-20 gi|194208240|ref|XP_001490971.2| PREDICTED: simila ( 253) 370 100.9 6.4e-20 gi|115305340|gb|AAI23515.1| Bridging integrator 3 ( 253) 370 100.9 6.4e-20 gi|73994038|ref|XP_851235.1| PREDICTED: similar to ( 357) 370 100.9 8.6e-20 gi|109085830|ref|XP_001104054.1| PREDICTED: bridgi ( 253) 368 100.4 9.2e-20 gi|194041460|ref|XP_001925982.1| PREDICTED: simila ( 489) 370 101.0 1.1e-19 gi|109085832|ref|XP_001104299.1| PREDICTED: bridgi ( 199) 363 99.0 1.8e-19 gi|62899646|sp|Q68FW8.1|BIN3_RAT RecName: Full=Bri ( 253) 362 98.8 2.6e-19 gi|148703979|gb|EDL35926.1| bridging integrator 3, ( 167) 357 97.5 4.4e-19 gi|62899814|sp|Q9JI08.1|BIN3_MOUSE RecName: Full=B ( 253) 357 97.6 6.3e-19 gi|74221245|dbj|BAE42110.1| unnamed protein produc ( 253) 357 97.6 6.3e-19 gi|126304171|ref|XP_001381994.1| PREDICTED: hypoth ( 263) 352 96.3 1.6e-18 gi|149601604|ref|XP_001515889.1| PREDICTED: hypoth ( 234) 339 93.0 1.4e-17 gi|148703978|gb|EDL35925.1| bridging integrator 3, ( 204) 322 88.7 2.4e-16 gi|169642385|gb|AAI60604.1| Zgc:158415 protein [Da ( 253) 321 88.5 3.4e-16 gi|62203094|gb|AAH92368.1| Bin3 protein [Xenopus t ( 252) 320 88.2 4.1e-16 gi|62899707|sp|Q5PPZ5.1|BIN3_XENLA RecName: Full=B ( 252) 319 88.0 4.9e-16 gi|118117318|ref|XP_001235609.1| PREDICTED: hypoth ( 58) 305 84.1 1.6e-15 >>gi|21748580|dbj|BAC03427.1| FLJ00367 protein [Homo sap (75 aa) initn: 484 init1: 484 opt: 484 Z-score: 677.4 bits: 129.4 E(): 4.9e-29 Smith-Waterman score: 484; 100.000% identity (100.000% similar) in 75 aa overlap (1-75:1-75) 10 20 30 40 50 60 FLJ003 NLPLHRRFTELWLPTAMSKSAVKISLDLLSNPLCEQDQDLLNMVTALDTAMKRMDAFNQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 NLPLHRRFTELWLPTAMSKSAVKISLDLLSNPLCEQDQDLLNMVTALDTAMKRMDAFNQE 10 20 30 40 50 60 70 FLJ003 KVNQIQKTVIEPLKK ::::::::::::::: gi|217 KVNQIQKTVIEPLKK 70 >>gi|119584060|gb|EAW63656.1| bridging integrator 3, iso (222 aa) initn: 374 init1: 374 opt: 374 Z-score: 520.1 bits: 101.8 E(): 2.9e-20 Smith-Waterman score: 374; 100.000% identity (100.000% similar) in 60 aa overlap (16-75:23-82) 10 20 30 40 50 FLJ003 NLPLHRRFTELWLPTAMSKSAVKISLDLLSNPLCEQDQDLLNMVTALDTAMKR :::::::::::::::::::::::::::::::::::::: gi|119 MRLEEQTRRLQKDMKKSTDADLAMSKSAVKISLDLLSNPLCEQDQDLLNMVTALDTAMKR 10 20 30 40 50 60 60 70 FLJ003 MDAFNQEKVNQIQKTVIEPLKK :::::::::::::::::::::: gi|119 MDAFNQEKVNQIQKTVIEPLKKFGSVFPSLNMAVKRREQALQDYRRLQAKVEKYEEKEKT 70 80 90 100 110 120 >>gi|119584058|gb|EAW63654.1| bridging integrator 3, iso (231 aa) initn: 374 init1: 374 opt: 374 Z-score: 519.9 bits: 101.9 E(): 3e-20 Smith-Waterman score: 374; 100.000% identity (100.000% similar) in 60 aa overlap (16-75:10-69) 10 20 30 40 50 60 FLJ003 NLPLHRRFTELWLPTAMSKSAVKISLDLLSNPLCEQDQDLLNMVTALDTAMKRMDAFNQE ::::::::::::::::::::::::::::::::::::::::::::: gi|119 MKKSTDADLAMSKSAVKISLDLLSNPLCEQDQDLLNMVTALDTAMKRMDAFNQE 10 20 30 40 50 70 FLJ003 KVNQIQKTVIEPLKK ::::::::::::::: gi|119 KVNQIQKTVIEPLKKFGSVFPSLNMAVKRREQALQDYRRLQAKVEKYEEKEKTGPVLAKL 60 70 80 90 100 110 >>gi|62896499|dbj|BAD96190.1| bridging integrator 3 vari (253 aa) initn: 374 init1: 374 opt: 374 Z-score: 519.3 bits: 101.9 E(): 3.2e-20 Smith-Waterman score: 374; 100.000% identity (100.000% similar) in 60 aa overlap (16-75:54-113) 10 20 30 40 FLJ003 NLPLHRRFTELWLPTAMSKSAVKISLDLLSNPLCEQDQDLLNMVT :::::::::::::::::::::::::::::: gi|628 FEREYGKLQQLEEQTRRLQKDMKKSTDADLAMSKSAVKISLDLLSNPLCEQDQDLLNMVT 30 40 50 60 70 80 50 60 70 FLJ003 ALDTAMKRMDAFNQEKVNQIQKTVIEPLKK :::::::::::::::::::::::::::::: gi|628 ALDTAMKRMDAFNQEKVNQIQKTVIEPLKKFGSVFPSLNMAVKRREQALQDYRRLQAKVE 90 100 110 120 130 140 >>gi|30912742|sp|Q9NQY0.1|BIN3_HUMAN RecName: Full=Bridg (253 aa) initn: 374 init1: 374 opt: 374 Z-score: 519.3 bits: 101.9 E(): 3.2e-20 Smith-Waterman score: 374; 100.000% identity (100.000% similar) in 60 aa overlap (16-75:54-113) 10 20 30 40 FLJ003 NLPLHRRFTELWLPTAMSKSAVKISLDLLSNPLCEQDQDLLNMVT :::::::::::::::::::::::::::::: gi|309 FEREYGKLQQLEEQTRRLQKDMKKSTDADLAMSKSAVKISLDLLSNPLCEQDQDLLNMVT 30 40 50 60 70 80 50 60 70 FLJ003 ALDTAMKRMDAFNQEKVNQIQKTVIEPLKK :::::::::::::::::::::::::::::: gi|309 ALDTAMKRMDAFNQEKVNQIQKTVIEPLKKFGSVFPSLNMAVKRREQALQDYRRLQAKVE 90 100 110 120 130 140 >>gi|119584055|gb|EAW63651.1| bridging integrator 3, iso (335 aa) initn: 374 init1: 374 opt: 374 Z-score: 517.4 bits: 101.9 E(): 4.1e-20 Smith-Waterman score: 374; 100.000% identity (100.000% similar) in 60 aa overlap (16-75:161-220) 10 20 30 40 FLJ003 NLPLHRRFTELWLPTAMSKSAVKISLDLLSNPLCEQDQDLLNMVT :::::::::::::::::::::::::::::: gi|119 FEREYGKLQQLEEQTRRLQKDMKKSTDADLAMSKSAVKISLDLLSNPLCEQDQDLLNMVT 140 150 160 170 180 190 50 60 70 FLJ003 ALDTAMKRMDAFNQEKVNQIQKTVIEPLKK :::::::::::::::::::::::::::::: gi|119 ALDTAMKRMDAFNQEKVNQIQKTVIEPLKKFGSVFPSLNMAVKRREQALQDYRRLQAKVE 200 210 220 230 240 250 >>gi|119584059|gb|EAW63655.1| bridging integrator 3, iso (360 aa) initn: 374 init1: 374 opt: 374 Z-score: 516.9 bits: 102.0 E(): 4.3e-20 Smith-Waterman score: 374; 100.000% identity (100.000% similar) in 60 aa overlap (16-75:161-220) 10 20 30 40 FLJ003 NLPLHRRFTELWLPTAMSKSAVKISLDLLSNPLCEQDQDLLNMVT :::::::::::::::::::::::::::::: gi|119 FEREYGKLQQLEEQTRRLQKDMKKSTDADLAMSKSAVKISLDLLSNPLCEQDQDLLNMVT 140 150 160 170 180 190 50 60 70 FLJ003 ALDTAMKRMDAFNQEKVNQIQKTVIEPLKK :::::::::::::::::::::::::::::: gi|119 ALDTAMKRMDAFNQEKVNQIQKTVIEPLKKFGSVFPSLNMAVKRREQALQDYRRLQAKVE 200 210 220 230 240 250 >>gi|7022451|dbj|BAA91603.1| unnamed protein product [Ho (199 aa) initn: 369 init1: 369 opt: 369 Z-score: 514.0 bits: 100.6 E(): 6.3e-20 Smith-Waterman score: 369; 100.000% identity (100.000% similar) in 59 aa overlap (17-75:1-59) 10 20 30 40 50 60 FLJ003 NLPLHRRFTELWLPTAMSKSAVKISLDLLSNPLCEQDQDLLNMVTALDTAMKRMDAFNQE :::::::::::::::::::::::::::::::::::::::::::: gi|702 MSKSAVKISLDLLSNPLCEQDQDLLNMVTALDTAMKRMDAFNQE 10 20 30 40 70 FLJ003 KVNQIQKTVIEPLKK ::::::::::::::: gi|702 KVNQIQKTVIEPLKKFGSVFPSLIMAVKRREQALQDYRRLQAKVEKYEEKEKTGPVLAKL 50 60 70 80 90 100 >>gi|12654761|gb|AAH01223.1| BIN3 protein [Homo sapiens] (199 aa) initn: 369 init1: 369 opt: 369 Z-score: 514.0 bits: 100.6 E(): 6.3e-20 Smith-Waterman score: 369; 100.000% identity (100.000% similar) in 59 aa overlap (17-75:1-59) 10 20 30 40 50 60 FLJ003 NLPLHRRFTELWLPTAMSKSAVKISLDLLSNPLCEQDQDLLNMVTALDTAMKRMDAFNQE :::::::::::::::::::::::::::::::::::::::::::: gi|126 MSKSAVKISLDLLSNPLCEQDQDLLNMVTALDTAMKRMDAFNQE 10 20 30 40 70 FLJ003 KVNQIQKTVIEPLKK ::::::::::::::: gi|126 KVNQIQKTVIEPLKKFGSVFPSLNMAVKRREQALQDYRRLQAKVEKYEEKEKTGPVLAKL 50 60 70 80 90 100 >>gi|194208240|ref|XP_001490971.2| PREDICTED: similar to (253 aa) initn: 370 init1: 370 opt: 370 Z-score: 513.8 bits: 100.9 E(): 6.4e-20 Smith-Waterman score: 370; 98.333% identity (100.000% similar) in 60 aa overlap (16-75:54-113) 10 20 30 40 FLJ003 NLPLHRRFTELWLPTAMSKSAVKISLDLLSNPLCEQDQDLLNMVT ::::::::::::::::::::::::.::::: gi|194 FEREYGKLQQLEEQTKRLQKDMKKSTDADLAMSKSAVKISLDLLSNPLCEQDQDFLNMVT 30 40 50 60 70 80 50 60 70 FLJ003 ALDTAMKRMDAFNQEKVNQIQKTVIEPLKK :::::::::::::::::::::::::::::: gi|194 ALDTAMKRMDAFNQEKVNQIQKTVIEPLKKFGSVFPSLNMAVKRREQALQDYRRLQAKVE 90 100 110 120 130 140 75 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 21:57:50 2009 done: Fri Feb 27 22:01:25 2009 Total Scan time: 452.010 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]