hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/shimazu/full/sh/sh04092/interpro/cnk_1/seq.in
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Query:  sh04092  1326

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PH       Pleckstrin homology domain.                     74.0    1.9e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/1    1217  1321 ..     1    82 []    74.0  1.9e-17

Alignments of top-scoring domains:
PH: domain 1 of 1, from 1217 to 1321: score 74.0, E = 1.9e-17
                   *->vikeGwLlkks..k.swkkryfvLfn..gvLlyyksk...kpkgsip
                       +++G+L k++++ +swkkr+fv+++ +++L+yy +k+++k+kg+i 
     sh04092  1217    KVCRGYLVKMGgkIkSWKKRWFVFDRlkRTLSYYVDKhetKLKGVIY 1263 

                   Lsgc.svre.p............cFeivt.drtlllqAeseeereeWvea
                    + +++v+ ++ ++  +++++  +F+++t+dr +++ A+s+e ++ W++ 
     sh04092  1264 FQAIeEVYYdHlrsaakspnpalTFCVKThDRLYYMVAPSAEAMRIWMDV 1313 

                   lqsaiaka<-*
                   +   ++ +   
     sh04092  1314 IVTGAEGY    1321 

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