hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/shimazu/full/sh/sh04092/interpro/cnk_1/seq.in
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Query:  sh04092  1326

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PH         PH domain                                     75.7    9.5e-19   1
FHA        FHA domain                                    48.5    1.5e-10   1
Extensin_2 Extensin-like region                        -134.6       0.32   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
FHA          1/1      71   132 ..     1    94 []    48.5  1.5e-10
Extensin_2   1/1     127   483 ..     1   385 []  -134.6     0.32
PH           1/1    1217  1319 ..     1    92 []    75.7  9.5e-19

Alignments of top-scoring domains:
FHA: domain 1 of 1, from 71 to 132: score 48.5, E = 1.5e-10
                   *->vtiGRdsssddilldddqdislsgsiSrrHatieykdggvslelafr
                      ++iG+         + d +i+++g ++++H+ ie+ +g+        
     sh04092    71    TVIGS--------AARDISIQGPG-LAPEHCYIENLGGTL------- 101  

                   laqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<-*
                            +l+++++++      ++g ++   +p+rL++G++++lG   
     sh04092   102 ---------TLYPCGNAC-----TIDGLPV--RQPTRLTQGCMLCLG    132  

Extensin_2: domain 1 of 1, from 127 to 483: score -134.6, E = 0.32
                   *->lltlvvalvslslpseasakYsYsSPPPpekpYvYkSPPpPspkyvy
                       +  +     l +  +a+ak+  s  P        + P pP      
     sh04092   127    CMLCLGQSTFLRFNHPAEAKWMKSMIPAGG-----RAPGPPY----- 163  

                   kSPPPpkkpYvYsSPPPPsyvykSPPPPkp..yvYkSPPpP......kyv
                    SP P++ + +      P    + P     ++ + +S  +  ++  ++ v
     sh04092   164 -SPVPAESESLVNGNHTPQTATRGPSACAShsSLVSSIEKDlqeimdSLV 212  

                   YkSPPpPv..ykYkSPPPPthsppPpyvykSPPPPpkkyvykSpPpptPv
                    + P +  +++   SP  P+ +   +y  + P  P    v +S    +P 
     sh04092   213 LEEPGAAGkkPAATSPLSPM-ANGGRYLLSPPTSPGAMSVGSSYENTSPA 261  

                   YkYkSPPPPp.yvYkspPpPvkkripyvYkSPPPPpPYvYkSpPppvkky
                   +   S P  ++    ++P            S   P P    S Pp v   
     sh04092   262 FSPLSSPASSgSCASHSP------------SGQEPGP----SVPPLV--- 292  

                   iyksppppephkYvYkSPPP...PpPYvyesvpeqkikYvYkSPPPPkks
                        p+ +  +Y     PP+++P+     + p+ + k   + PP P   
     sh04092   293 -----PARSS-SYHLALQPPqsrPS-GARSESPRLSRKGGHERPPSPGLR 335  

                   Yk.spsppkyVYkSpPpPvipykYkSP....PPPkkkyspaPrkpyvYkS
                        sp   V   + + +     +SP+ ++  P    s +  +     S
     sh04092   336 GLlTDSPAATVLAEARRAT-----ESPrlggQLPVVAISLSEYPASGALS 380  

                   PP...PPtyvYkSpPpPykpptppkiyksPPPPtPvyvYkspPpippik.
                    P++ P +++++ pP P +  +++ +   PP P     ++ pP    + +
     sh04092   381 QPtsiPGSPKFQ-PPVPAPRNKIGTLQDRPPSP-----FREPPGSERVLt 424  

                   .sssppPvyvYkSpPppvysPPPPyvYssPPPPvyvynsaPvykksPPkh
                   +s+s + v    S         PP   +sP       +s        P  
     sh04092   425 tSPSRQLVGRTFSDGLATRTLQPP---ESPRLGRRGLDSMRELPPLSPSL 471  

                   hYiYsSPPPphh<-*
                        SP P      
     sh04092   472 SRRALSPLPTRT    483  

PH: domain 1 of 1, from 1217 to 1319: score 75.7, E = 9.5e-19
                   *->vikeGwLlkkg.gkkswkkRyfvLfn..dvLlyykdkk.kkpkgsip
                       +++G+L k+g+++kswkkR+fv+ + +++L+yy dk++ k+kg+i 
     sh04092  1217    KVCRGYLVKMGgKIKSWKKRWFVFDRlkRTLSYYVDKHeTKLKGVIY 1263 

                   Lsgi.qvekvpdn......krkncFeirt.dretlllqaeseeerkeWvk
                    + i++v+++   +  ++++   +F+++t+dr  +++ a+s+e ++ W++
     sh04092  1264 FQAIeEVYYDHLRsaakspNPALTFCVKThDR-LYYMVAPSAEAMRIWMD 1312 

                   aiqsair<-*
                    i   ++   
     sh04092  1313 VIVTGAE    1319 

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