# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sh03944.fasta.nr -Q ../query/FLJ00296.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00296, 187 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826773 sequences Expectation_n fit: rho(ln(x))= 4.8359+/-0.000183; mu= 10.1868+/- 0.010 mean_var=70.2514+/-13.392, 0's: 36 Z-trim: 38 B-trim: 3 in 1/64 Lambda= 0.153020 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|21748500|dbj|BAC03387.1| FLJ00296 protein [Homo ( 187) 1344 304.8 4.8e-81 gi|114658648|ref|XP_001162062.1| PREDICTED: WD rep ( 323) 1088 248.5 7.5e-64 gi|114658646|ref|XP_001162099.1| PREDICTED: WD rep ( 378) 885 203.7 2.6e-50 gi|74758274|sp|Q6P4I2.1|WDR73_HUMAN RecName: Full= ( 378) 885 203.7 2.6e-50 gi|40225582|gb|AAH14115.1| WDR73 protein [Homo sap ( 380) 885 203.7 2.6e-50 gi|55930876|gb|AAH50648.1| WDR73 protein [Homo sap ( 386) 885 203.7 2.6e-50 gi|6841178|gb|AAF28942.1|AF161382_1 HSPC264 [Homo ( 388) 885 203.7 2.6e-50 gi|119622352|gb|EAX01947.1| WD repeat domain 73, i ( 404) 885 203.8 2.7e-50 gi|14042736|dbj|BAB55373.1| unnamed protein produc ( 378) 880 202.6 5.6e-50 gi|109082242|ref|XP_001084838.1| PREDICTED: simila ( 314) 877 201.9 7.7e-50 gi|119913668|ref|XP_001255635.1| PREDICTED: WD rep ( 301) 727 168.8 6.9e-40 gi|149690930|ref|XP_001498458.1| PREDICTED: WD rep ( 372) 710 165.1 1.1e-38 gi|149057338|gb|EDM08661.1| neuromedin B (predicte ( 310) 707 164.4 1.5e-38 gi|149057337|gb|EDM08660.1| neuromedin B (predicte ( 340) 707 164.4 1.6e-38 gi|26334422|dbj|BAC25093.1| unnamed protein produc ( 203) 696 161.8 5.9e-38 gi|73951569|ref|XP_851953.1| PREDICTED: hypothetic ( 427) 698 162.5 7.6e-38 gi|26330151|dbj|BAC28814.1| unnamed protein produc ( 312) 696 161.9 8.2e-38 gi|60359826|dbj|BAD90132.1| mFLJ00296 protein [Mus ( 397) 691 160.9 2.1e-37 gi|149057340|gb|EDM08663.1| neuromedin B (predicte ( 371) 688 160.2 3.2e-37 gi|116284037|gb|AAH28870.1| Wdr73 protein [Mus mus ( 262) 685 159.4 3.9e-37 gi|81916825|sp|Q9CWR1.1|WDR73_MOUSE RecName: Full= ( 371) 685 159.6 5e-37 gi|74143760|dbj|BAE41211.1| unnamed protein produc ( 371) 685 159.6 5e-37 gi|126273618|ref|XP_001364312.1| PREDICTED: simila ( 447) 572 134.7 1.9e-29 gi|118112501|ref|XP_423425.2| PREDICTED: hypotheti ( 273) 280 70.0 3.3e-10 gi|57032841|gb|AAH88871.1| Wdr73-prov protein [Xen ( 375) 280 70.2 4.1e-10 gi|160221323|sp|A5D8Q8.2|WDR73_XENLA WD repeat-con ( 369) 274 68.8 1e-09 gi|146327113|gb|AAI41774.1| Wdr73 protein [Xenopus ( 377) 274 68.8 1e-09 gi|82229949|sp|Q567G2.1|WDR73_DANRE WD repeat-cont ( 376) 198 52.1 0.00012 gi|47214529|emb|CAG04549.1| unnamed protein produc ( 268) 183 48.6 0.0009 >>gi|21748500|dbj|BAC03387.1| FLJ00296 protein [Homo sap (187 aa) initn: 1344 init1: 1344 opt: 1344 Z-score: 1611.2 bits: 304.8 E(): 4.8e-81 Smith-Waterman score: 1344; 100.000% identity (100.000% similar) in 187 aa overlap (1-187:1-187) 10 20 30 40 50 60 FLJ002 FILPGTGGKGPVTSQPCQIARPICLQPLVSFAVGLPDVSDSEELSSLQVLDADTFAFCCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 FILPGTGGKGPVTSQPCQIARPICLQPLVSFAVGLPDVSDSEELSSLQVLDADTFAFCCA 10 20 30 40 50 60 70 80 90 100 110 120 FLJ002 SGRLGLVDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPSIASLGSDGRLCLLDPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 SGRLGLVDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPSIASLGSDGRLCLLDPR 70 80 90 100 110 120 130 140 150 160 170 180 FLJ002 DLCHPVSSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGTAEQDFVLLSDLFLPGDCWVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 DLCHPVSSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGTAEQDFVLLSDLFLPGDCWVL 130 140 150 160 170 180 FLJ002 RKEPPAP ::::::: gi|217 RKEPPAP >>gi|114658648|ref|XP_001162062.1| PREDICTED: WD repeat (323 aa) initn: 1088 init1: 1088 opt: 1088 Z-score: 1302.6 bits: 248.5 E(): 7.5e-64 Smith-Waterman score: 1088; 100.000% identity (100.000% similar) in 151 aa overlap (37-187:173-323) 10 20 30 40 50 60 FLJ002 GGKGPVTSQPCQIARPICLQPLVSFAVGLPDVSDSEELSSLQVLDADTFAFCCASGRLGL :::::::::::::::::::::::::::::: gi|114 STLAPGVLHGARLRSLQVIDLESRKTTYTSDVSDSEELSSLQVLDADTFAFCCASGRLGL 150 160 170 180 190 200 70 80 90 100 110 120 FLJ002 VDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPSIASLGSDGRLCLLDPRDLCHPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPSIASLGSDGRLCLLDPRDLCHPV 210 220 230 240 250 260 130 140 150 160 170 180 FLJ002 SSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGTAEQDFVLLSDLFLPGDCWVLRKEPPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGTAEQDFVLLSDLFLPGDCWVLRKEPPA 270 280 290 300 310 320 FLJ002 P : gi|114 P >>gi|114658646|ref|XP_001162099.1| PREDICTED: WD repeat (378 aa) initn: 885 init1: 885 opt: 885 Z-score: 1059.5 bits: 203.7 E(): 2.6e-50 Smith-Waterman score: 885; 100.000% identity (100.000% similar) in 123 aa overlap (37-159:173-295) 10 20 30 40 50 60 FLJ002 GGKGPVTSQPCQIARPICLQPLVSFAVGLPDVSDSEELSSLQVLDADTFAFCCASGRLGL :::::::::::::::::::::::::::::: gi|114 STLAPGVLHGARLRSLQVIDLESRKTTYTSDVSDSEELSSLQVLDADTFAFCCASGRLGL 150 160 170 180 190 200 70 80 90 100 110 120 FLJ002 VDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPSIASLGSDGRLCLLDPRDLCHPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPSIASLGSDGRLCLLDPRDLCHPV 210 220 230 240 250 260 130 140 150 160 170 180 FLJ002 SSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGTAEQDFVLLSDLFLPGDCWVLRKEPPA ::::::::::::::::::::::::::::::::: gi|114 SSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGFDGTVQVYDATSWDGTRSQDGTRSQVE 270 280 290 300 310 320 FLJ002 P gi|114 PLFTHRGHIFLDGNGMDPAPLVTTHTWHPCRPRTLLSATNDASLHVWDWVDLCAPR 330 340 350 360 370 >>gi|74758274|sp|Q6P4I2.1|WDR73_HUMAN RecName: Full=WD r (378 aa) initn: 885 init1: 885 opt: 885 Z-score: 1059.5 bits: 203.7 E(): 2.6e-50 Smith-Waterman score: 885; 100.000% identity (100.000% similar) in 123 aa overlap (37-159:173-295) 10 20 30 40 50 60 FLJ002 GGKGPVTSQPCQIARPICLQPLVSFAVGLPDVSDSEELSSLQVLDADTFAFCCASGRLGL :::::::::::::::::::::::::::::: gi|747 STLAPGVLHGARLRSLQVVDLESRKTTYTSDVSDSEELSSLQVLDADTFAFCCASGRLGL 150 160 170 180 190 200 70 80 90 100 110 120 FLJ002 VDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPSIASLGSDGRLCLLDPRDLCHPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 VDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPSIASLGSDGRLCLLDPRDLCHPV 210 220 230 240 250 260 130 140 150 160 170 180 FLJ002 SSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGTAEQDFVLLSDLFLPGDCWVLRKEPPA ::::::::::::::::::::::::::::::::: gi|747 SSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGFDGTVQVYDATSWDGTRSQDGTRSQVE 270 280 290 300 310 320 FLJ002 P gi|747 PLFTHRGHIFLDGNGMDPAPLVTTHTWHPCRPRTLLSATNDASLHVWDWVDLCAPR 330 340 350 360 370 >>gi|40225582|gb|AAH14115.1| WDR73 protein [Homo sapiens (380 aa) initn: 885 init1: 885 opt: 885 Z-score: 1059.5 bits: 203.7 E(): 2.6e-50 Smith-Waterman score: 885; 100.000% identity (100.000% similar) in 123 aa overlap (37-159:175-297) 10 20 30 40 50 60 FLJ002 GGKGPVTSQPCQIARPICLQPLVSFAVGLPDVSDSEELSSLQVLDADTFAFCCASGRLGL :::::::::::::::::::::::::::::: gi|402 STLAPGVLHGARLRSLQVVDLESRKTTYTSDVSDSEELSSLQVLDADTFAFCCASGRLGL 150 160 170 180 190 200 70 80 90 100 110 120 FLJ002 VDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPSIASLGSDGRLCLLDPRDLCHPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|402 VDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPSIASLGSDGRLCLLDPRDLCHPV 210 220 230 240 250 260 130 140 150 160 170 180 FLJ002 SSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGTAEQDFVLLSDLFLPGDCWVLRKEPPA ::::::::::::::::::::::::::::::::: gi|402 SSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGFDGTVQVYDATSWDGTRSQDGTRSQVE 270 280 290 300 310 320 FLJ002 P gi|402 PLFTHRGHIFLDGNGMDPAPLVTTHTWHPCRPRTLLSATNDASLHVWDWVDLCAPR 330 340 350 360 370 380 >>gi|55930876|gb|AAH50648.1| WDR73 protein [Homo sapiens (386 aa) initn: 885 init1: 885 opt: 885 Z-score: 1059.4 bits: 203.7 E(): 2.6e-50 Smith-Waterman score: 885; 100.000% identity (100.000% similar) in 123 aa overlap (37-159:181-303) 10 20 30 40 50 60 FLJ002 GGKGPVTSQPCQIARPICLQPLVSFAVGLPDVSDSEELSSLQVLDADTFAFCCASGRLGL :::::::::::::::::::::::::::::: gi|559 STLAPGVLHGARLRSLQVVDLESRKTTYTSDVSDSEELSSLQVLDADTFAFCCASGRLGL 160 170 180 190 200 210 70 80 90 100 110 120 FLJ002 VDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPSIASLGSDGRLCLLDPRDLCHPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|559 VDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPSIASLGSDGRLCLLDPRDLCHPV 220 230 240 250 260 270 130 140 150 160 170 180 FLJ002 SSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGTAEQDFVLLSDLFLPGDCWVLRKEPPA ::::::::::::::::::::::::::::::::: gi|559 SSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGFDGTVQVYDATSWDGTRSQDGTRSQVE 280 290 300 310 320 330 FLJ002 P gi|559 PLFTHRGHIFLDGNGMDPAPLVTTHTWHPCRPRTLLSATNDASLHVWDWVDLCAPR 340 350 360 370 380 >>gi|6841178|gb|AAF28942.1|AF161382_1 HSPC264 [Homo sapi (388 aa) initn: 885 init1: 885 opt: 885 Z-score: 1059.3 bits: 203.7 E(): 2.6e-50 Smith-Waterman score: 885; 100.000% identity (100.000% similar) in 123 aa overlap (37-159:173-295) 10 20 30 40 50 60 FLJ002 GGKGPVTSQPCQIARPICLQPLVSFAVGLPDVSDSEELSSLQVLDADTFAFCCASGRLGL :::::::::::::::::::::::::::::: gi|684 STLAPGVLHGARLRSLQVVDLESRKTTYTSDVSDSEELSSLQVLDADTFAFCCASGRLGL 150 160 170 180 190 200 70 80 90 100 110 120 FLJ002 VDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPSIASLGSDGRLCLLDPRDLCHPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|684 VDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPSIASLGSDGRLCLLDPRDLCHPV 210 220 230 240 250 260 130 140 150 160 170 180 FLJ002 SSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGTAEQDFVLLSDLFLPGDCWVLRKEPPA ::::::::::::::::::::::::::::::::: gi|684 SSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGFDGTVQVYDATSWDGTRSQDGTRSQVE 270 280 290 300 310 320 FLJ002 P gi|684 PLFTHRGHIFLDGNGMDPAPLVTTHTWHPCRPRTLLSATNDASLHVWDWVDLLCPPLTPA 330 340 350 360 370 380 >>gi|119622352|gb|EAX01947.1| WD repeat domain 73, isofo (404 aa) initn: 885 init1: 885 opt: 885 Z-score: 1059.1 bits: 203.8 E(): 2.7e-50 Smith-Waterman score: 885; 100.000% identity (100.000% similar) in 123 aa overlap (37-159:199-321) 10 20 30 40 50 60 FLJ002 GGKGPVTSQPCQIARPICLQPLVSFAVGLPDVSDSEELSSLQVLDADTFAFCCASGRLGL :::::::::::::::::::::::::::::: gi|119 STLAPGVLHGARLRSLQVVDLESRKTTYTSDVSDSEELSSLQVLDADTFAFCCASGRLGL 170 180 190 200 210 220 70 80 90 100 110 120 FLJ002 VDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPSIASLGSDGRLCLLDPRDLCHPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPSIASLGSDGRLCLLDPRDLCHPV 230 240 250 260 270 280 130 140 150 160 170 180 FLJ002 SSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGTAEQDFVLLSDLFLPGDCWVLRKEPPA ::::::::::::::::::::::::::::::::: gi|119 SSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGFDGTVQVYDATSWDGTRSQDGTRSQVE 290 300 310 320 330 340 FLJ002 P gi|119 PLFTHRGHIFLDGNGMDPAPLVTTHTWHPCRPRTLLSATNDASLHVWDWVDLCAPR 350 360 370 380 390 400 >>gi|14042736|dbj|BAB55373.1| unnamed protein product [H (378 aa) initn: 880 init1: 880 opt: 880 Z-score: 1053.5 bits: 202.6 E(): 5.6e-50 Smith-Waterman score: 880; 99.187% identity (100.000% similar) in 123 aa overlap (37-159:173-295) 10 20 30 40 50 60 FLJ002 GGKGPVTSQPCQIARPICLQPLVSFAVGLPDVSDSEELSSLQVLDADTFAFCCASGRLGL :::::::::::::::::::::::::::::: gi|140 STLAPGVLHGARLRSLQVVDLESRKTTYTSDVSDSEELSSLQVLDADTFAFCCASGRLGL 150 160 170 180 190 200 70 80 90 100 110 120 FLJ002 VDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPSIASLGSDGRLCLLDPRDLCHPV :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|140 VDTRQKWAPLENRSPGPGSGGKRWCAEVGSWGQGPGPSIASLGSDGRLCLLDPRDLCHPV 210 220 230 240 250 260 130 140 150 160 170 180 FLJ002 SSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGTAEQDFVLLSDLFLPGDCWVLRKEPPA ::::::::::::::::::::::::::::::::: gi|140 SSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGFDGTVQVYDATSWDGTRSQDGTRSQVE 270 280 290 300 310 320 FLJ002 P gi|140 PLFTHRGHIFLDGNGMDPAPLVTTHTWHPCRPRTLLSATNDASLHVWDWVDLCAPR 330 340 350 360 370 >>gi|109082242|ref|XP_001084838.1| PREDICTED: similar to (314 aa) initn: 861 init1: 861 opt: 877 Z-score: 1051.0 bits: 201.9 E(): 7.7e-50 Smith-Waterman score: 877; 80.769% identity (89.744% similar) in 156 aa overlap (4-159:83-237) 10 20 30 FLJ002 FILPGTGGKGPVTSQPCQIARPICLQPLVSFAV : .. . .: :: . . ..: : .. gi|109 VLHGVRLRSLQVVDLESRKTTYTSGIVVLCPLLAAPAGITPQPNSATMETEFNP-VCQVL 60 70 80 90 100 110 40 50 60 70 80 90 FLJ002 GLPDVSDSEELSSLQVLDADTFAFCCASGRLGLVDTRQKWAPLENRSPGPGSGGERWCAE :. ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GIQDVSDSEELSSLQVLDADTFAFCCASGRLGLVDTRQKWAPLENRSPGPGSGGERWCAE 120 130 140 150 160 170 100 110 120 130 140 150 FLJ002 VGSWGQGPGPSIASLGSDGRLCLLDPRDLCHPVSSVQCPVSVPSPDPELLRVTWAPGLKN ::: :::::::::::::::.:::::::::::::::::::::.::::::::::::::.::: gi|109 VGSRGQGPGPSIASLGSDGHLCLLDPRDLCHPVSSVQCPVSIPSPDPELLRVTWAPSLKN 180 190 200 210 220 230 160 170 180 FLJ002 CLAISGTAEQDFVLLSDLFLPGDCWVLRKEPPAP :::::: gi|109 CLAISGFDGTVQVYDATSWNGTQSQVEPLFTHRGHVFLDGSGTDPAPLVTTHTWHPCRPR 240 250 260 270 280 290 187 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 12:29:45 2009 done: Fri Feb 27 12:34:19 2009 Total Scan time: 654.250 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]