# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh03944.fasta.huge -Q ../query/FLJ00296.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00296, 187 aa vs ./tmplib.10216 library 2210807 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.2173+/-0.00459; mu= 17.7336+/- 0.310 mean_var=115.8630+/-24.976, 0's: 0 Z-trim: 1 B-trim: 15 in 1/39 Lambda= 0.119152 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0407 ( 2143 res) hg01339 (2143) 112 30.1 0.86 KIAA1685 ( 1505 res) pf04287 (1505) 107 29.0 1.3 FLJ00072 ( 204 res) as00072 ( 204) 96 25.7 1.8 FLJ00349 ( 146 res) sg00018 ( 146) 93 24.9 2.2 KIAA0921 ( 1658 res) ah00573 (1658) 102 28.2 2.5 KIAA1482 ( 818 res) fj06205 ( 818) 98 27.0 2.8 FLJ00169 ( 432 res) sh07709 ( 432) 94 25.8 3.3 KIAA2036 ( 1322 res) pf06513 (1322) 96 27.0 4.6 FLJ00142 ( 674 res) sh04107 ( 674) 92 25.8 5.2 FLJ00153 ( 497 res) sh06127 ( 497) 90 25.3 5.7 FLJ00037 ( 145 res) as00037 ( 145) 84 23.3 6.3 KIAA0346 ( 1682 res) hg01508s1 (1682) 94 26.8 6.5 KIAA0149 ( 830 res) ha01221 ( 830) 91 25.8 6.5 KIAA1441 ( 1258 res) hg02860b (1258) 92 26.3 7.1 FLJ00200 ( 122 res) sj03670 ( 122) 81 22.7 8.2 KIAA1093 ( 1727 res) fh18956 (1727) 91 26.3 9.4 KIAA1579 ( 704 res) fj04678 ( 704) 87 25.0 9.7 FLJ00400 ( 782 res) sj07486 ( 782) 86 24.9 12 KIAA0899 ( 939 res) hk09548s1 ( 939) 86 25.0 13 KIAA1082 ( 1787 res) fg06837 (1787) 88 25.8 14 KIAA1849 ( 1114 res) fg05386(revised) (1114) 86 25.2 14 KIAA1878 ( 453 res) pj01649 ( 453) 82 23.8 14 KIAA1787 ( 1564 res) fh19054 (1564) 86 25.4 16 KIAA2031 ( 515 res) ef03841 ( 515) 81 23.7 17 FLJ00402 ( 137 res) sj07511 ( 137) 75 21.8 18 FLJ00129 ( 668 res) sh01893 ( 668) 81 23.9 19 KIAA0435 ( 787 res) hh02241 ( 787) 81 24.0 21 KIAA0285 ( 658 res) hh10127a ( 658) 80 23.7 22 KIAA0821 ( 1566 res) hh02631 (1566) 83 24.9 23 FLJ00248 ( 501 res) sj08681 ( 501) 78 23.2 24 FLJ00001 ( 155 res) as00001 ( 155) 73 21.5 24 KIAA0482 ( 1332 res) hj01880 (1332) 82 24.6 24 FLJ00079 ( 84 res) as00079 ( 84) 70 20.5 25 FLJ00239 ( 717 res) sj07427 ( 717) 79 23.6 25 KIAA0687 ( 1175 res) hk02992 (1175) 81 24.3 25 FLJ00227 ( 196 res) sj06355 ( 196) 73 21.7 27 FLJ00329 ( 349 res) sj02919 ( 349) 75 22.4 28 FLJ00016 ( 349 res) as00016 ( 349) 75 22.4 28 KIAA0842 ( 1020 res) hk05077 (1020) 79 23.9 30 FLJ00259 ( 659 res) sh04102 ( 659) 77 23.2 31 KIAA0492 ( 167 res) hh01162 ( 167) 71 21.2 31 KIAA0401 ( 344 res) hg01095 ( 344) 74 22.2 32 KIAA1996 ( 437 res) bj00079 ( 437) 75 22.6 32 FLJ00384 ( 118 res) sj03287 ( 118) 69 20.6 33 KIAA1211 ( 803 res) fh00041 ( 803) 77 23.4 34 KIAA0239 ( 849 res) ha06313 ( 849) 77 23.4 35 KIAA0278 ( 460 res) ha06634 ( 460) 74 22.5 37 KIAA0434 ( 1571 res) hh02165 (1571) 79 24.2 37 KIAA0973 ( 1583 res) hj06871 (1583) 79 24.2 37 FLJ00141 ( 1326 res) sh04092 (1326) 78 23.9 39 >>KIAA0407 ( 2143 res) hg01339 (2143 aa) initn: 110 init1: 55 opt: 112 Z-score: 107.5 bits: 30.1 E(): 0.86 Smith-Waterman score: 112; 29.661% identity (51.695% similar) in 118 aa overlap (76-186:43-157) 50 60 70 80 90 100 FLJ002 SLQVLDADTFAFCCASGRLGLVDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPSI :.. . : :: : . .:: .. KIAA04 GPALLQALWAGWVLTLQPLPPTAFTPNGTYLQHLARDPTSGTLYLGATNFLFQLSPGLQL 20 30 40 50 60 70 110 120 130 140 150 160 FLJ002 ASLGSDGRLCLLDPRDLCHPVSSVQCPVSVPSPDPELLRVTWAPG-LKNCLAI-SGTAEQ . : : . :: :: :: .:: . :. .:. : .. .:: : : .. .:. :: KIAA04 EATVSTGPV--LDSRDCLPPVMPDECPQAQPTNNPNQLLLV-SPGALVVCGSVHQGVCEQ 80 90 100 110 120 170 180 FLJ002 DFV-LLSDLFL----PGDCWVLRKEPPAP . : .:.: ::: . . :: KIAA04 RRLGQLEQLLLRPERPGDTQYVAANDPAVSTVGLVAQGLAGEPLLFVGRGYTSRGVGGGI 130 140 150 160 170 180 >>KIAA1685 ( 1505 res) pf04287 (1505 aa) initn: 136 init1: 60 opt: 107 Z-score: 104.3 bits: 29.0 E(): 1.3 Smith-Waterman score: 109; 27.545% identity (50.299% similar) in 167 aa overlap (11-159:698-857) 10 20 30 FLJ002 FILPGTGGKGPVTSQPCQI---AR-PICL-QPLVSFAVGL :. .: :. :: :. . .: . : : KIAA16 QVSPQPFLNRGDRIQVRKVPPLKIPVSRISPMPFHPSQVSPRARFPVSITSPNRTGARTL 670 680 690 700 710 720 40 50 60 70 80 90 FLJ002 PDVSDSEELSSLQVLDADTFAFCCASGRLGLVDTRQKWAPLENRSPGPGSGGERWCAEVG :.. . .: . : : . : :.. .: . .: . . ::: ::: :. : KIAA16 ADIKAKAQLVKAQRAAAAAAAAAAAAASVGGTIP----GPGPGGGQGPGEGGEGQTARGG 730 740 750 760 770 780 100 110 120 130 140 FLJ002 SWGQ------GPGPSI--ASLGSDGRLCLLDPRDLCHPVSSVQCPV-SVPSP-DPELL-- : :. : ::.. :. :: : : : : : .. : . ..:: .:. . KIAA16 SPGSDRVSETGKGPTLELAGTGSRGGTRELLP---CGPETQPQSETKTTPSQAQPHSVSG 790 800 810 820 830 840 150 160 170 180 FLJ002 -RVTWAPGLKNCLAISGTAEQDFVLLSDLFLPGDCWVLRKEPPAP .. .: . :.:: KIAA16 AQLQQTPPVPPTPAVSGACTSVPSPAHIEKLDNEKLNPTRATATVASVSHPQGPSSCRQE 850 860 870 880 890 900 >>FLJ00072 ( 204 res) as00072 (204 aa) initn: 79 init1: 79 opt: 96 Z-score: 101.9 bits: 25.7 E(): 1.8 Smith-Waterman score: 96; 35.484% identity (48.387% similar) in 62 aa overlap (95-152:14-74) 70 80 90 100 110 120 FLJ002 GLVDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPSIASLGSDGRLCLLDPRDL-C :: :. ::::. : .. :. . : : FLJ000 SPQCKRAACFLSAGSVGSEPGPSVQCLCTQIIACVTEDSVLSC 10 20 30 40 130 140 150 160 170 180 FLJ002 HPVSSVQCPVSVPSPDPELLRVTWA---PGLKNCLAISGTAEQDFVLLSDLFLPGDCWVL : . : ::: . : : : :: : FLJ000 HLLPSC-CPVPGRTRMPPSLSGPWQSLRPGSKGRGRGPLVGEGRGPPGVGPGNSRARPSW 50 60 70 80 90 100 FLJ002 RKEPPAP FLJ000 VCWPKALALTPPRLPPPNRPASAALATRRCWCCRLPRALVPPGPGTSRPRRVGLGSWKAG 110 120 130 140 150 160 >>FLJ00349 ( 146 res) sg00018 (146 aa) initn: 72 init1: 72 opt: 93 Z-score: 100.4 bits: 24.9 E(): 2.2 Smith-Waterman score: 93; 35.000% identity (48.333% similar) in 60 aa overlap (95-150:29-87) 70 80 90 100 110 120 FLJ002 GLVDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPSIASLGSDGRLCLLDPRDL-C :: :. ::::. : .. :. . : : FLJ003 LPGDFDPLLHPFMFLSPQCKRAACFLSAGSVGSEPGPSVQCLCTQIIACVTEDSVLSC 10 20 30 40 50 130 140 150 160 170 180 FLJ002 HPVSSVQCPVSVPSPDPELLRVTWA---PGLKNCLAISGTAEQDFVLLSDLFLPGDCWVL : . : ::: . : : : :: FLJ003 HLLPSC-CPVPGRTRMPPSLSGPWQSLRPGSEGRGRGPAGRRGLGAPDTLAPREGAGVRW 60 70 80 90 100 110 >>KIAA0921 ( 1658 res) ah00573 (1658 aa) initn: 130 init1: 54 opt: 102 Z-score: 99.2 bits: 28.2 E(): 2.5 Smith-Waterman score: 110; 30.435% identity (49.068% similar) in 161 aa overlap (3-151:1409-1552) 10 20 30 FLJ002 FILPGTGGKGPVTSQPCQIARPI--CLQPLVS :: ... : .. ::: : : .:. . KIAA09 PPPVATRSPFVPPPPTFYPFLTGVGATQDTLPPPAARRPPSGGPCQAERDDSDCEEPIEA 1380 1390 1400 1410 1420 1430 40 50 60 70 80 FLJ002 --FAVGLPDVSDSEELSSLQVLDADTF--AFCCASGRLGLVDTRQKWAPLEN-RSPGP-G :: : .: :: :: : . : .: .. : :.. : : :: : :. : : KIAA09 SGFASG--EVFDS----SLPPTDDEDFYTTFPLVTDRTTLLSPR-KPAPRPNLRTDGATG 1440 1450 1460 1470 1480 1490 90 100 110 120 130 140 FLJ002 SGGERWCAEVGSWGQGPGPSIASLGSDGRLCLLDPRD--LCHPVSSVQCPVSVPSPDPEL . : : ..:.:.. . :.. :: . : .: . :.: : KIAA09 APG------VLFAPSAPAPNLPA----GKMNHRDPLQPLLENPPLGPGAPTSFEPRRPPP 1500 1510 1520 1530 1540 150 160 170 180 FLJ002 LR--VTWAPGLKNCLAISGTAEQDFVLLSDLFLPGDCWVLRKEPPAP :: :: :::. KIAA09 LRPGVTSAPGFPHLPTANPTGPGERGPPGAVEVIRESSSTTGMVVGIVAAAALCILILLY 1550 1560 1570 1580 1590 1600 >>KIAA1482 ( 818 res) fj06205 (818 aa) initn: 81 init1: 81 opt: 98 Z-score: 98.3 bits: 27.0 E(): 2.8 Smith-Waterman score: 98; 29.474% identity (49.474% similar) in 95 aa overlap (65-151:552-642) 40 50 60 70 80 FLJ002 LPDVSDSEELSSLQVLDADTFAFCCASGRLGLVDTRQKWAPLENRSPG-----PGSGGER :. : . :. .. :: ::: .. KIAA14 GLPSLTSSLYSDHSWVVMPRVSIPPYPIAGGVDDLDEDTPPIVSQFPGTMAKPPGSLARS 530 540 550 560 570 580 90 100 110 120 130 140 FLJ002 --WCAEVGSW-GQGPGPSIASLGSDGRLCLLDPRDLCHPVSSVQCPVSVPSPDPELLRVT : : ..: :. :.:. . : :: . : :.:::::..: :. KIAA14 SSLCRSRRSIVPSSPQPQRAQLAPHAP----HPSHPRHPHHPQHTPHSLPSPDPDILSVS 590 600 610 620 630 150 160 170 180 FLJ002 WAPGLKNCLAISGTAEQDFVLLSDLFLPGDCWVLRKEPPAP :.: KIAA14 SCPALYRNEEEEEAIYFSAEKQWEVPDTASECDSLNSSIGRKQSPPLSLEIYQTLSPRKI 640 650 660 670 680 690 >>FLJ00169 ( 432 res) sh07709 (432 aa) initn: 84 init1: 62 opt: 94 Z-score: 97.1 bits: 25.8 E(): 3.3 Smith-Waterman score: 94; 30.488% identity (51.220% similar) in 82 aa overlap (79-151:172-250) 50 60 70 80 90 100 FLJ002 VLDADTFAFCCASGRLGLVDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPG------ :: ::..::.: . .. . :: FLJ001 GTARPPHPKVARPARPLGRRVRTTGIGERRRSYYPGKSGEQWSGTLSHASVQPGLRCEGQ 150 160 170 180 190 200 110 120 130 140 150 FLJ002 -PSIASLGSDGRLCLLDPRDLCHPVSSVQCPVSVPSPDPELLR--VTWAPGLKNCLAISG :. . ::.:.: : . . : . : :::.: : .. ::: FLJ001 APQEPGRGSSGKLHLCSGKPL---RKRSPCSRSVPAPGQSRGRRFTSSPPGLPASPSPCI 210 220 230 240 250 160 170 180 FLJ002 TAEQDFVLLSDLFLPGDCWVLRKEPPAP FLJ001 TERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 260 270 280 290 300 310 >>KIAA2036 ( 1322 res) pf06513 (1322 aa) initn: 95 init1: 55 opt: 96 Z-score: 94.6 bits: 27.0 E(): 4.6 Smith-Waterman score: 96; 29.012% identity (42.593% similar) in 162 aa overlap (3-149:624-766) 10 20 FLJ002 FILPGTGGKGPVTSQPC-QIARP--ICLQ-PL ::. :: . :. :: . . : :. : KIAA20 VAPGLCLTPEQLCDGIPDCPQGEDELDCGGLPALGGPNR-TGLPCPEYTCPNGTCIGFQL 600 610 620 630 640 650 30 40 50 60 70 FLJ002 VSFAVG-------LPDVSDSEELSSLQVLDADTFAFCCASGRLGLVDTRQ---KWAPLEN : .:: :: ... :. : : : :..: .: :.: KIAA20 VRVGVGGGGGSAMLP--PSTRALTPLPPQVCDGQPDCGRPGQVGPSPEEQGCGAWGPW-- 660 670 680 690 700 80 90 100 110 120 130 FLJ002 RSP-GPGSGGERWCAEVGSWGQGPGPSIASLGSDGRLCLLDPRDLCHPVSSVQCPVSVPS :: :: : : : : :::: . . :: :. . .. ::: KIAA20 -SPWGPCS---RTC---GPWGQGRSRRCSPLGLLVLQNCPGPEHQSQACFTAACPV---- 710 720 730 740 750 140 150 160 170 180 FLJ002 PDPELLRVTWAPGLKNCLAISGTAEQDFVLLSDLFLPGDCWVLRKEPPAP : : ::.: KIAA20 -DGEW--STWSPWSVCSEPCRGTMTRQRQCHSPQNGGRTCAALPGGLHSTRQTKPCPQDG 760 770 780 790 800 810 >>FLJ00142 ( 674 res) sh04107 (674 aa) initn: 72 init1: 72 opt: 92 Z-score: 93.5 bits: 25.8 E(): 5.2 Smith-Waterman score: 92; 28.182% identity (50.909% similar) in 110 aa overlap (71-175:3-108) 50 60 70 80 90 FLJ002 SEELSSLQVLDADTFAFCCASGRLGLVDTRQKWAPLENRSPGPGSGGERWCAEVGS-WGQ ..: .. :.: . : : .:. :: FLJ001 LAESWRWVNRRGPPLLAVCARQGASAGTEWGA 10 20 30 100 110 120 130 140 150 FLJ002 GPGPSIAS--LGSDGRLCLLDPRDLCHPVSSVQCPVSVPSPDPELLRVTWAPGLKNCLAI : :: :: ::. . .:: .: ..: .. :: .: ..: : : . FLJ001 GAGPHWASSPLGTGSG--SIDPDELRTVLQSCLRESAISLPDEKLDQLTLA--LFESADA 40 50 60 70 80 160 170 180 FLJ002 SGTAEQDFVLLSDLF--LPGDCWVLRKEPPAP .:.. : : : . .:: FLJ001 DGNGAITFEELRDELQRFPGVMENLTISAAHWLTAPAPRPRPRRPRQLTRAYWHNHRSQL 90 100 110 120 130 140 >>FLJ00153 ( 497 res) sh06127 (497 aa) initn: 60 init1: 60 opt: 90 Z-score: 92.8 bits: 25.3 E(): 5.7 Smith-Waterman score: 90; 30.667% identity (54.667% similar) in 75 aa overlap (74-146:343-417) 50 60 70 80 90 100 FLJ002 LSSLQVLDADTFAFCCASGRLGLVDTRQKWAPLENRSPG-PGSGGERWCAEVGSWGQGPG .: . ::: : :. . : .:: .:: FLJ001 RRRISLTKRLSAKLAREKSSSPSGSPGDPSSPTSSVSPGSPPSSPRSRDAPAGSPPASPG 320 330 340 350 360 370 110 120 130 140 150 160 FLJ002 PSIASLGSDGRLCLLDPRDLCHPVSSVQCPVSVP-SPDPELLRVTWAPGLKNCLAISGTA :. : : : .:: . :..: . :. . : . ..::. FLJ001 PQGPSTKLPLSLDLPSPRPFALPLGSPRIPLPAQQSSEACVIRVSIDNDHGNLYRSILLT 380 390 400 410 420 430 170 180 FLJ002 EQDFVLLSDLFLPGDCWVLRKEPPAP FLJ001 SQDKAPSVVRRALQKHNVPQPWACDYQLFQVLPGDRGWEEMLISAIKSVGTFFGMFAMCQ 440 450 460 470 480 490 187 residues in 1 query sequences 2210807 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:51:14 2009 done: Fri Feb 27 10:51:15 2009 Total Scan time: 0.360 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]