# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh03894.fasta.huge -Q ../query/FLJ00358.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00358, 217 aa vs ./tmplib.10216 library 2210777 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 3.7114+/-0.00581; mu= 25.6341+/- 0.394 mean_var=212.4014+/-46.447, 0's: 0 Z-trim: 2 B-trim: 0 in 0/40 Lambda= 0.088003 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00008 ( 217 res) as00008 ( 217) 1559 208.5 2e-55 FLJ00099 ( 217 res) as00099 ( 217) 1559 208.5 2e-55 KIAA1986 ( 334 res) pg00636 ( 334) 127 27.1 1.2 KIAA1814 ( 1285 res) ph00952 (1285) 125 28.2 2.3 KIAA1120 ( 1024 res) hg02941 (1024) 122 27.6 2.8 KIAA1538 ( 1029 res) fg06773 (1029) 120 27.3 3.3 KIAA0907 ( 569 res) hk10396 ( 569) 114 26.0 4.6 KIAA1908 ( 445 res) ah02604 ( 445) 111 25.4 5.5 KIAA1938 ( 1376 res) hg00912s1 (1376) 114 26.8 6.1 KIAA0269 ( 567 res) ha06751 ( 567) 109 25.3 7.1 KIAA0284 ( 1573 res) pf09542 (1573) 110 26.5 9.1 KIAA1924 ( 613 res) hh01339 ( 613) 106 25.0 9.5 KIAA1928 ( 757 res) fg05950(revised) ( 757) 106 25.2 10 FLJ00305 ( 789 res) sh05120 ( 789) 106 25.3 10 KIAA1355 ( 1189 res) fj01564 (1189) 107 25.8 11 KIAA1091 ( 1359 res) hk04373 (1359) 107 25.9 11 FLJ00404 ( 261 res) sj07851 ( 261) 100 23.4 12 FLJ00091 ( 170 res) as00091 ( 170) 97 22.6 14 KIAA1887 ( 967 res) fk02232 ( 967) 103 25.1 14 FLJ00201 ( 705 res) sj04110 ( 705) 100 24.4 17 KIAA0306 ( 1451 res) hg00063 (1451) 102 25.4 18 KIAA1306 ( 1154 res) fh05845 (1154) 101 25.0 18 KIAA1783 ( 1560 res) fg01285 (1560) 102 25.4 18 KIAA1149 ( 532 res) fg04087 ( 532) 98 23.9 18 KIAA0505 ( 200 res) hh00043 ( 200) 94 22.4 19 KIAA1172 ( 929 res) hj03919(revised) ( 929) 99 24.5 20 KIAA1869 ( 935 res) hh01800 ( 935) 98 24.4 22 KIAA0765 ( 952 res) hk04803s1 ( 952) 98 24.4 22 KIAA1849 ( 1114 res) fg05386(revised) (1114) 98 24.6 23 KIAA1883 ( 1480 res) fh02249 (1480) 99 25.0 24 KIAA1507 ( 872 res) hk04967 ( 872) 97 24.2 24 KIAA1311 ( 889 res) fh11512 ( 889) 97 24.3 24 KIAA1522 ( 1044 res) fh14706(revised) (1044) 97 24.4 25 KIAA0666 ( 1085 res) hk02075 (1085) 97 24.4 25 FLJ00416 ( 221 res) sj04686 ( 221) 90 22.0 28 KIAA1190 ( 174 res) hg03443a ( 174) 89 21.7 28 KIAA0490 ( 135 res) hh00727 ( 135) 88 21.3 28 KIAA0338 ( 934 res) hg01242 ( 934) 95 24.0 29 KIAA1802 ( 821 res) fj21631 ( 821) 94 23.8 30 KIAA1831 ( 663 res) hk00543 ( 663) 93 23.5 30 KIAA0434 ( 1571 res) hh02165 (1571) 96 24.7 31 KIAA1087 ( 952 res) hk02378 ( 952) 94 23.9 31 FLJ00053 ( 443 res) as00053 ( 443) 91 22.8 32 FLJ00283 ( 500 res) sh02088 ( 500) 91 22.9 33 KIAA0821 ( 1566 res) hh02631 (1566) 95 24.5 34 KIAA0339 ( 1709 res) hg01304(revised) (1709) 95 24.6 35 KIAA1029 ( 1015 res) fh00363 (1015) 93 23.9 35 FLJ00150 ( 1793 res) sh05613 (1793) 95 24.7 35 KIAA0574 ( 405 res) hj00204 ( 405) 89 22.5 37 KIAA1366 ( 550 res) fj02695 ( 550) 90 22.9 37 >>FLJ00008 ( 217 res) as00008 (217 aa) initn: 1559 init1: 1559 opt: 1559 Z-score: 1088.4 bits: 208.5 E(): 2e-55 Smith-Waterman score: 1559; 100.000% identity (100.000% similar) in 217 aa overlap (1-217:1-217) 10 20 30 40 50 60 FLJ003 LGGRSPPCPRLGAPPPLPCRARPGGVVGGGPGGGPAWAAPAMNGLSLSELCCLFCCPPCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ000 LGGRSPPCPRLGAPPPLPCRARPGGVVGGGPGGGPAWAAPAMNGLSLSELCCLFCCPPCP 10 20 30 40 50 60 70 80 90 100 110 120 FLJ003 GRIAAKLAFLPPEATYSLVPEPEPGPGGAGAAPLGTLRASSGAPGRWKLHLTERADFQYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ000 GRIAAKLAFLPPEATYSLVPEPEPGPGGAGAAPLGTLRASSGAPGRWKLHLTERADFQYS 70 80 90 100 110 120 130 140 150 160 170 180 FLJ003 QRELDTIEVFPTKSARGNRVSCMYVRCVPGARYTVLFSHGNAVDLGQMSSFYIGLGSRLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ000 QRELDTIEVFPTKSARGNRVSCMYVRCVPGARYTVLFSHGNAVDLGQMSSFYIGLGSRLH 130 140 150 160 170 180 190 200 210 FLJ003 CNIFSYDYSGYGASSGRPSERNLYADIDAAWQALRTR ::::::::::::::::::::::::::::::::::::: FLJ000 CNIFSYDYSGYGASSGRPSERNLYADIDAAWQALRTR 190 200 210 >>FLJ00099 ( 217 res) as00099 (217 aa) initn: 1559 init1: 1559 opt: 1559 Z-score: 1088.4 bits: 208.5 E(): 2e-55 Smith-Waterman score: 1559; 100.000% identity (100.000% similar) in 217 aa overlap (1-217:1-217) 10 20 30 40 50 60 FLJ003 LGGRSPPCPRLGAPPPLPCRARPGGVVGGGPGGGPAWAAPAMNGLSLSELCCLFCCPPCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ000 LGGRSPPCPRLGAPPPLPCRARPGGVVGGGPGGGPAWAAPAMNGLSLSELCCLFCCPPCP 10 20 30 40 50 60 70 80 90 100 110 120 FLJ003 GRIAAKLAFLPPEATYSLVPEPEPGPGGAGAAPLGTLRASSGAPGRWKLHLTERADFQYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ000 GRIAAKLAFLPPEATYSLVPEPEPGPGGAGAAPLGTLRASSGAPGRWKLHLTERADFQYS 70 80 90 100 110 120 130 140 150 160 170 180 FLJ003 QRELDTIEVFPTKSARGNRVSCMYVRCVPGARYTVLFSHGNAVDLGQMSSFYIGLGSRLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ000 QRELDTIEVFPTKSARGNRVSCMYVRCVPGARYTVLFSHGNAVDLGQMSSFYIGLGSRLH 130 140 150 160 170 180 190 200 210 FLJ003 CNIFSYDYSGYGASSGRPSERNLYADIDAAWQALRTR ::::::::::::::::::::::::::::::::::::: FLJ000 CNIFSYDYSGYGASSGRPSERNLYADIDAAWQALRTR 190 200 210 >>KIAA1986 ( 334 res) pg00636 (334 aa) initn: 120 init1: 73 opt: 127 Z-score: 104.8 bits: 27.1 E(): 1.2 Smith-Waterman score: 128; 32.743% identity (46.903% similar) in 113 aa overlap (5-112:192-286) 10 20 30 FLJ003 LGGRSPPCPRLGAPPPLPCRARPGGVVGGGPGGG .:: : ::: : :.. :. KIAA19 SVSSPGRGHKVFVVTRVESPPERAEPPASPTPPSP---PPPPSP----PAS-----PSLP 170 180 190 200 40 50 60 70 80 FLJ003 PAWAAPAMN-GLSLSELCCLFCCPPCPGRIAAKLAF-LPPEATYSLVPEPEPGP---GGA :: : . . : : . :: : : . : : :: . .: ::: ::: ::. KIAA19 PAGAIDTRDTGSSEPQP------PPEPPRSGPPLPNGLKPEFALALPPEPPPGPEVKGGS 210 220 230 240 250 260 90 100 110 120 130 140 FLJ003 GAAPLGTLRASSGAPGRWKLHLTERADFQYSQRELDTIEVFPTKSARGNRVSCMYVRCVP . : .:. : : :..: KIAA19 CGLEHGERGPRAGVEGPWVLYVTPGKPLPVVGLSFPLFKMVLAGASKVGLSSHLHPASLG 270 280 290 300 310 320 >>KIAA1814 ( 1285 res) ph00952 (1285 aa) initn: 111 init1: 61 opt: 125 Z-score: 100.0 bits: 28.2 E(): 2.3 Smith-Waterman score: 125; 35.802% identity (51.852% similar) in 81 aa overlap (6-80:1138-1214) 10 20 30 FLJ003 LGGRSPPCPRLGAPPPLPCRARPGGVVGGGPGGGP :: : ::::: : . .: .:.: : KIAA18 GSATLGPSPLQAAASASASSFQAPASVETRPPPPPPPPPPPLP----PPAHLGRSPAGPP 1110 1120 1130 1140 1150 1160 40 50 60 70 80 FLJ003 AWAAPAMNGLSLSELCCLFCCPPCPGRIA--AKL----AFLPPEATYSLVPEPEPGPGGA . :: . .: :. : :. . :.: ::::: .. :: : KIAA18 VLHAPPPPNAALPPPPTLLASNPEPALLQSLASLPPNQAFLPPTSAASLPPANASLSIKL 1170 1180 1190 1200 1210 1220 90 100 110 120 130 140 FLJ003 GAAPLGTLRASSGAPGRWKLHLTERADFQYSQRELDTIEVFPTKSARGNRVSCMYVRCVP KIAA18 TSLPHKGARPSFTVHHQPLPRLALAQAAPGIPQASATGPSAVWVSLGMPPPYAAHLSGVK 1230 1240 1250 1260 1270 1280 >>KIAA1120 ( 1024 res) hg02941 (1024 aa) initn: 210 init1: 76 opt: 122 Z-score: 98.5 bits: 27.6 E(): 2.8 Smith-Waterman score: 122; 33.645% identity (50.467% similar) in 107 aa overlap (2-108:892-987) 10 20 30 FLJ003 LGGRSPPCPRLGAPPPLPCRARPGGVVGGGP :. :: : . . : ..: ::. ::: KIAA11 PAARRRLSLRGRGLFSLRGLRAHQRSHSSGGSTSPGCTHHDSMDPSDEEGR-GGAGGGGA 870 880 890 900 910 920 40 50 60 70 80 90 FLJ003 GGGPAWAAPAMNGLSLSELCCLFCCPPCPGRIAAKLAFLPPEATYSLVPEPEPGPGGAGA : . . ....:::. : : :: :: :. : .: ::. :: :.: KIAA11 G---SEHSETLSSLSLTSLFCPPPPPPAPGLTPAR-KF---SSTSSLAA---PGRPHAAA 930 940 950 960 970 100 110 120 130 140 150 FLJ003 APLGTLRASSGAPGRWKLHLTERADFQYSQRELDTIEVFPTKSARGNRVSCMYVRCVPGA : :. : : : : KIAA11 LAHGLARSPSWAADRSKDPPGRAPLPMGLGPLAPPPQPLPGELEPGDAASKRKR 980 990 1000 1010 1020 >>KIAA1538 ( 1029 res) fg06773 (1029 aa) initn: 83 init1: 61 opt: 120 Z-score: 97.1 bits: 27.3 E(): 3.3 Smith-Waterman score: 120; 27.885% identity (49.038% similar) in 104 aa overlap (6-106:476-576) 10 20 30 FLJ003 LGGRSPPCPRLGAPPPLPCRARPGG--VVGGGPGG :: :. : :: . :.:. .: :: .. KIAA15 YSQGAPEAPLSPTLNTPAPVAMPASPPPGPPPAPEPGPPPSVITFAHPAPSVIVHGGSSS 450 460 470 480 490 500 40 50 60 70 80 90 FLJ003 GPAWAAPAMNGLSLSELCCLFCCPPCPGRIAAKLAFLPPEATYSLVPE-PEPGPGGAGAA : . .. : .: : . . :: : . : . :: . .: : . . : :: KIAA15 GGGGSGTASTGGSQAASVITYTAPPRPPK---KREYPPPPPEPAATPTSPATAVSPATAA 510 520 530 540 550 560 100 110 120 130 140 150 FLJ003 PLGTLRASSGAPGRWKLHLTERADFQYSQRELDTIEVFPTKSARGNRVSCMYVRCVPGAR . .. : :: KIAA15 GPAMATTTEEAKGRNPRAGRTLTYTAKPVGGIGGGGGPPTGAGRGPSQLQAPPPLCQITV 570 580 590 600 610 620 >>KIAA0907 ( 569 res) hk10396 (569 aa) initn: 118 init1: 88 opt: 114 Z-score: 94.5 bits: 26.0 E(): 4.6 Smith-Waterman score: 114; 23.353% identity (54.491% similar) in 167 aa overlap (58-217:26-178) 30 40 50 60 70 80 FLJ003 GGGPGGGPAWAAPAMNGLSLSELCCLFCCPPCPGRIAAKLAFLPPEATYSLVPEPEPGPG : : : : :::: : . : .:: KIAA09 VEAVAMSAGSATHPGAGGRRSKWDQPAP----APLLFLPPAAPGGEVTSSGGSPG 10 20 30 40 50 90 100 110 120 130 140 FLJ003 GAGAAPLGTLRASSGAPGRWKLHLTERADFQYSQRELDTIEVFPTKSARGNR------VS :. ::: :.: :.... .. . : .. .. .: . ... : :. .:. :. KIAA09 GTTAAPSGALDAAAAVAAKINAMLMAKGKLKPTQNASEKLQA-PGKGLTSNKSKDDLVVA 60 70 80 90 100 110 150 160 170 180 190 200 FLJ003 CMYVRCVPGARYTVLFSHGNAVD-LGQMSSFYIGLGSRLHCNIFSYDYSGYGASSGRPSE . . :: . . :...:.. : ....:. .. .:. . . . . : :.. KIAA09 EVEINDVPLTCRN-LLTRGQTQDEISRLSGAAVSTRGRF---MTTEEKAKVG-----PGD 120 130 140 150 160 210 FLJ003 RNLYADIDAAWQALRTR : :: ... . : : KIAA09 RPLYLHVQGQTRELVDRAVNRIKEIITNGVVKAATGTSPTFNGATVTVYHQPAPIAQLSP 170 180 190 200 210 220 >>KIAA1908 ( 445 res) ah02604 (445 aa) initn: 126 init1: 97 opt: 111 Z-score: 93.0 bits: 25.4 E(): 5.5 Smith-Waterman score: 112; 25.949% identity (44.304% similar) in 158 aa overlap (3-151:137-272) 10 20 30 FLJ003 LGGRSPPCPRLGAPPPLPCRARPGGVVGGGPG :.. :: .. :: :: :: : : . KIAA19 PAPFLPWDQTPWRVSFSWSPVLLAWGGVWSGEAHPCAHVLRPPASPCPPRPR--RGCGDS 110 120 130 140 150 160 40 50 60 70 80 FLJ003 GGPAWAAPAMNGLSLSELCCLFC--CPP--CPGRIAAKLAFLPPEATYSLVPEPEPGPGG :. . : :. : . :. : ::: :: :::. . ::: KIAA19 GSSGMAQRAQAGSNQSRGKCGRDGRCPPRSSPG---------APEAAERVESAETRGPGK 170 180 190 200 210 90 100 110 120 130 140 FLJ003 AGA-APLGTLRASSG----APGRWKLHLTERADFQYSQRELDTIEVFPTKSARGNRVSCM . .: . . : .::: . : ...: .. :.. .: . . . KIAA19 SWILSPSSMSEPRRGKARRSPGRRR-H--PHSSFPQASS--------PSSPSRRETIPQV 220 230 240 250 260 150 160 170 180 190 200 FLJ003 YVRCVPGARYTVLFSHGNAVDLGQMSSFYIGLGSRLHCNIFSYDYSGYGASSGRPSERNL :::: KIAA19 QSSGVPGAMSPEQTLFSRSPRGLSHLGQSLCRTVKESEAQRGKTMPPGSHSPSGAGQGRT 270 280 290 300 310 320 >>KIAA1938 ( 1376 res) hg00912s1 (1376 aa) initn: 135 init1: 67 opt: 114 Z-score: 92.2 bits: 26.8 E(): 6.1 Smith-Waterman score: 114; 31.429% identity (48.571% similar) in 105 aa overlap (5-100:1066-1165) 10 20 30 FLJ003 LGGRSPPCPRLGAPPPLPCRARPGGVVGGGPGGG ::: .: : : . ::: ::: ::: KIAA19 SHSYSDEFGPSGTDFTRRQLSLQDNLQHMLSPPQITIGPQRPAP--SGPGGGSGGGSGGG 1040 1050 1060 1070 1080 1090 40 50 60 70 80 FLJ003 PAWAAPAMNGLSLSELCCLFCCPPCPGRIAAKLAFLPPEATY--------SLVPEPE-PG . : .. . ..: : :. ...: . :: .: :: : : KIAA19 GGGQPPPLQRGKSQQLTVSAAQKPRPS--SGNL-LQSPEPSYGPARPRQQSLSKEGSIGG 1100 1110 1120 1130 1140 1150 90 100 110 120 130 140 FLJ003 PGGAGAAPLGTLRASSGAPGRWKLHLTERADFQYSQRELDTIEVFPTKSARGNRVSCMYV ::.:.. : :. : KIAA19 SGGSGGGGGGGLKPSITKQHSQTPSTLNPTMPASERTVAWVSNMPHLSADIESAHIEREE 1160 1170 1180 1190 1200 1210 >>KIAA0269 ( 567 res) ha06751 (567 aa) initn: 72 init1: 72 opt: 109 Z-score: 91.1 bits: 25.3 E(): 7.1 Smith-Waterman score: 109; 27.885% identity (43.269% similar) in 104 aa overlap (6-104:366-460) 10 20 30 FLJ003 LGGRSPPCPRLGAP----PPLPCRARPGGVVGGGP :: : :: :: : . :: . . : KIAA02 PPPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPPPAPLQIAPGVLHPAPP 340 350 360 370 380 390 40 50 60 70 80 90 FLJ003 GGGPAWAAPAMNGLSLSELCCLFCCPPCP-GRIAAKLAFLPPEATYSLVPEPEPGPGGAG .: . :. . .: : : :.. . ::: : : : :: KIAA02 PIAPPLVQPSPPVARAAPVCETVPVHPLPQGEVQG----LPPPPP----PPPLPPPGIRP 400 410 420 430 440 100 110 120 130 140 150 FLJ003 AAPLGTLRASSGAPGRWKLHLTERADFQYSQRELDTIEVFPTKSARGNRVSCMYVRCVPG ..:. :. : . : KIAA02 SSPV-TVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIPASEPKRHPSTLPVISDAR 450 460 470 480 490 500 217 residues in 1 query sequences 2210777 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:01:48 2009 done: Fri Feb 27 11:01:48 2009 Total Scan time: 0.380 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]