hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/shimazu/full/sh/sh03709/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  sh03709  812

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MYSc     Myosin. Large ATPases.                         424.9   4.4e-123   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MYSc       1/1       1   502 [.     1   771 []   424.9 4.4e-123

Alignments of top-scoring domains:
MYSc: domain 1 of 1, from 1 to 502: score 424.9, E = 4.4e-123
                   *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav
                                                                     
     sh03709     -    ----------------------------------------------- -    

                   NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre
                                                                     
     sh03709     - -------------------------------------------------- -    

                   keNQsIiISGESGAGKTEatKkimqYLAavsgsvesvedqiLesNPiLEA
                                                                     
     sh03709     - -------------------------------------------------- -    

                   FGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEKSRVVsQakg
                                                                     
     sh03709     - -------------------------------------------------- -    

                   ERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqggtpfankrys
                            LL+G  + +++el+L++   +p  Y+++ qg+         
     sh03709     1 ---------LLRGSEDKQLHELHLER---NPAVYNFTHQGA--------- 29   

                   sgcltvd.giD.DaeeFkeTdEvtlkAmrvlGfseeEqesIFrilAAILH
                   + + tv +  D+D +  ++++E    Amrv+Gfs eE+es+ rilAAILH
     sh03709    30 GLNMTVHsALDsDEQSHQAVTE----AMRVIGFSPEEVESVHRILAAILH 75   

                   LGNieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpeeLekaLtkR
                   LGNieF e+++ g+ + ++ + va e  ++ +AeL   + +  +++L+ R
     sh03709    76 LGNIEFVETEE-GGLQKEGLA-VAEEALVDHVAELTATPRDLVLRSLLAR 123  

                   kiktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWLVkrINksl..
                   ++  gg   + i k ++  +A+yaRDA AKa+Y RLF W+V+rIN+ +++
     sh03709   124 TVASGGR--ELIEKGHTAAEASYARDACAKAVYQRLFEWVVNRINSVMep 171  

                   .........sayfIGVLDIyGFEiFekNSFEQfCINyaNEKLQQfFnqhv
                   +++++++++++++IGVLDIyGFE+F +NSFEQfCINy+NEKLQQ+F+q++
     sh03709   172 rgrdprrdgKDTVIGVLDIYGFEVFPVNSFEQFCINYCNEKLQQLFIQLI 221  

                   FKlEQEEYerEGIeWtfIdFfliDNQpciDLIEkKgkrPlGIlslLDEeC
                   +K+EQEEYerEGI W  +++f  +N  ++DL+E +   + GIl+ LDE+C
     sh03709   222 LKQEQEEYEREGITWQSVEYF--NNATIVDLVERP---HRGILAVLDEAC 266  

                   lfHAqPkgTDqtFleKLnkalyhqhhkkhphfskprkSlkk.gkp.kkrf
                        +  TD  Fl+ L     ++hh  h h+++     ++ +  +k+ +
     sh03709   267 SS--AGTITDRIFLQTL-----DTHHRHHLHYTS-----RQlCPTdKTME 304  

                   grtaFiikHYAGdVtYnveGFLeKNkDtLfedlieLlqsSknpliasLFp
                     ++F+ikHYAGdVtY+veGF++KN+D+Lf+d++ Ll +S++p ++ ++p
     sh03709   305 FGRDFRIKHYAGDVTYSVEGFIDKNRDFLFQDFKRLLYNSTDPTLRAMWP 354  

                   eeadqsssaakekssggagksrkagrrepskgtisskkrppTvGsqFk.s
                   ++  + ++                           ++krp T+G++Fk+s
     sh03709   355 DGQQDITE---------------------------VTKRPLTAGTLFKnS 377  

                   LneLmetLnstnPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvLEniRI
                   +  L+e+L+s++P+++RCIKPNe K +g+ d+  ++hQ+ ylG+LEn+R+
     sh03709   378 MVALVENLASKEPFYVRCIKPNEDKVAGKLDENHCRHQVAYLGLLENVRV 427  

                   RraGFPyRlpfdeFlqRYkvLlpktwppwggewknrlfgdakkacealLq
                   RraGF++R+p+++Fl RYk+ + +twp+        l g++k+a+ alL+
     sh03709   428 RRAGFASRQPYSRFLLRYKMTCEYTWPNH-------LLGSDKAAVSALLE 470  

                   slglgiegdnldeeeyqiGkTKvFlRnpgqlaeLEelRee<-*
                   ++g         ++++++G++K+F+R+p++l  LE+ R +   
     sh03709   471 QHG--------LQGDVAFGHSKLFIRSPRTLVTLEQSRAR    502  

//