hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/shimazu/full/sh/sh03709/interpro/cnk_1/seq.in
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Query:  sh03709  812

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
Myosin_head   Myosin head (motor domain)                273.6    2.5e-78   1
Myosin_tail_2 Myosin tail                               224.6    1.4e-63   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Myosin_head     1/1       1   488 [.     1   795 []   273.6  2.5e-78
Myosin_tail_2   1/1     608   811 ..     1   241 []   224.6  1.4e-63

Alignments of top-scoring domains:
Myosin_head: domain 1 of 1, from 1 to 488: score 273.6, E = 2.5e-78
                   *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrlp
                                                                     
     sh03709     -    ----------------------------------------------- -    

                   iYteeiiakYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA
                                                                     
     sh03709     - -------------------------------------------------- -    

                   GKTEntKkvmqYlAsvsgstpkvssaevtpnkeegsledqiLqsNPiLEA
                                                                     
     sh03709     - -------------------------------------------------- -    

                   FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy
                                                                     
     sh03709     - -------------------------------------------------- -    

                   QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc
                                LL g  +++ + eL+L++  +p  Y+++ q++  n +
     sh03709     1 -------------LLRGSEDKQ-LHELHLER--NPAVYNFTHQGAGLNMT 34   

                   ytvyrrDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNie
                   +          D +  + + +A+++iGf+ ee +s+ rilAAILhLGNie
     sh03709    35 VHS----ALDSDEQSHQAVTEAMRVIGFSPEEVESVHRILAAILHLGNIE 80   

                   GFkqdqat.TGkeeqAGvtvsedteealeiiaeLLGvDaeeLekaLlsrr
                    F+++ + +  ke+ A    + +++  +  +aeL  +     +++Ll r+
     sh03709    81 -FVETEEGgLQKEGLA----VAEEAL-VDHVAELTATPRDLVLRSLLART 124  

                   i.ktGgggkrretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaL
                   + + G     re + k+ +  +A+yaRDA AKa Y RLF W+V++iN ++
     sh03709   125 VaSGG-----RELIEKGHTAAEASYARDACAKAVYQRLFEWVVNRINSVM 169  

                   sakeQasdSrGGqaaegdDTVSITVVdlPraaldkranfIGvLDIyGFEI
                   +      +                     ++  d +  +IGvLDIyGFE+
     sh03709   170 EPRG---R---------------------DPRRDGKDTVIGVLDIYGFEV 195  

                   FaekNSFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglD
                   F  +NSFEQ+cINY+NEKLQQ+F+++++k EQEEY+rEgI+W  ++y ++
     sh03709   196 F-PVNSFEQFCINYCNEKLQQLFIQLILKQEQEEYEREGITWQSVEY-FN 243  

                   nqacidLIEkKmkPpGIlslLDEeCrfPka.tDqtFldKLlqtfsskhpr
                   n +++dL+E   +  GIl+ LDE+C      tD  Fl+ L  ++  +h+ 
     sh03709   244 NATIVDLVER--PHRGILAVLDEACSSAGTiTDRIFLQTLDTHH-RHHL- 289  

                   lthFaqkpgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfdd
                     h+ ++    +  k+  +   F+ikHYAGdV+Y++egf++KN+D+Lf+d
     sh03709   290 --HYTSRQ-LCPTDKTMEFGRDFRIKHYAGDVTYSVEGFIDKNRDFLFQD 336  

                   lisllksSsdvpllaeLFpeeelseaAnrrnkapdfeadfdeeeaaaksa
                      ll  S+d p+l+ ++p+                              
     sh03709   337 FKRLLYNSTD-PTLRAMWPD------------------------------ 355  

                   klgsgkgksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKP
                      ++     ++k++  T+g +fk+s+ +L+++L s    +P +vRCIKP
     sh03709   356 ---GQQDITEVTKRP-LTAGTLFKNSMVALVENLASK---EPFYVRCIKP 398  

                   NekKkagqFDnslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrl
                   Ne K ag++D+  ++hQ+ +lG+LE ++R+rraGF++R+++++Fl RY++
     sh03709   399 NEDKVAGKLDENHCRHQVAYLGLLE-NVRVRRAGFASRQPYSRFLLRYKM 447  

                   LapktwppgfrpkwvgdakkgceliLqslrqtpgnldkeeyrfGkTKiFf
                    ++ twp      + g++k ++ ++L+++     +l  ++++fG++K F+
     sh03709   448 TCEYTWPNH----LLGSDKAAVSALLEQH-----GL-QGDVAFGHSKLFI 487  

                   R<-*
                   R   
     sh03709   488 R    488  

Myosin_tail_2: domain 1 of 1, from 608 to 811: score 224.6, E = 1.4e-63
                   *->qKvvAseiFkGKKeryreSlnsvRlFaGDYLdlsnInpkllkllgse
                      +Kv+A+++++G ++++++     R++a DYL+    ++++ + l+++
     sh03709   608    AKVAAMGALQGLRQDWGCR----RAWARDYLSSAT-DNPTASSLFAQ 649  

                   ggqiideLr.kd.FgkVlFadkgevLViKfdRkLggKprrRqLlLTdral
                        ++Lr+kd+Fg VlF+++    V+K++R  ++K+r+R+LlLTd++l
     sh03709   650 RL---KTLRdKDgFGAVLFSSH----VRKVNR--FHKIRNRALLLTDQHL 690  

                   YlvdqkkkkkgpEKdpktykvKrrIplaaitgvSlSslsDnllVIHikpa
                   Y++d          + ++y v+r +pl a+tg+S++s+ D+l+V+H    
     sh03709   691 YKLD----------PDRQYRVMRAVPLEAVTGLSVTSGGDQLVVLHA--- 727  

                   dladkqgDlvlasghKqPkkeeRitElvtvLvktyksatggklnvnfsds
                      ++q Dlv+++++  P++++R++Elv+vL ++++ +++ +l+v++sd+
     sh03709   728 ---RGQDDLVVCLHRSRPPLDNRVGELVGVLAAHCQGEGR-TLEVRVSDC 773  

                   ieynlkkekfdpGkkktvkfqkdassgvklvifkkkkghlvsilpp<-*
                   i  + ++         ++++++++++ +++++f+  +g +++ +p    
     sh03709   774 IPLSHRG--------VRRLISVEPRPEQPEPDFRCARGSFTLLWPS    811  

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