# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh03586.fasta.huge -Q ../query/FLJ00292.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00292, 194 aa vs ./tmplib.10216 library 2210800 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 3.6036+/-0.00377; mu= 19.9681+/- 0.256 mean_var=82.2507+/-17.473, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.141418 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0389 ( 1296 res) hj00061 (1296) 101 30.0 0.56 KIAA0514 ( 483 res) hf00310 ( 483) 93 27.7 1.1 KIAA0254 ( 1009 res) ha07011 (1009) 95 28.6 1.2 KIAA0527 ( 768 res) hg02246 ( 768) 94 28.2 1.2 KIAA0792 ( 828 res) hk05691 ( 828) 84 26.3 4.9 KIAA1100 ( 444 res) hk07907 ( 444) 81 25.2 5.5 KIAA2011 ( 1091 res) pj02017 (1091) 84 26.4 5.7 KIAA1844 ( 367 res) fj12009 ( 367) 80 24.9 5.8 KIAA0821 ( 1566 res) hh02631 (1566) 83 26.5 7.9 KIAA1043 ( 2126 res) af02720 (2126) 84 26.9 8 KIAA1282 ( 1117 res) hh04440b(revised) (1117) 79 25.4 12 FLJ00364 ( 601 res) sh04977 ( 601) 76 24.4 13 KIAA1932 ( 795 res) fj14525 ( 795) 74 24.2 20 KIAA1868 ( 463 res) fj22550 ( 463) 72 23.4 20 KIAA1757 ( 1409 res) fh19225(revised) (1409) 76 25.0 20 KIAA1950 ( 535 res) fj03308 ( 535) 72 23.5 22 FLJ00264 ( 644 res) sj01648 ( 644) 72 23.6 24 KIAA0500 ( 213 res) hg00404 ( 213) 68 22.0 24 KIAA0238 ( 676 res) fg04858 ( 676) 72 23.7 24 KIAA1839 ( 541 res) fh00676 ( 541) 71 23.3 25 FLJ00115 ( 757 res) as00115 ( 757) 72 23.7 26 FLJ00332 ( 201 res) sj03652 ( 201) 67 21.8 26 KIAA0047 ( 268 res) ha01551 ( 268) 68 22.2 27 KIAA1860 ( 689 res) fh18358 ( 689) 71 23.5 28 KIAA0599 ( 697 res) hj03137 ( 697) 71 23.5 28 FLJ00402 ( 137 res) sj07511 ( 137) 65 21.1 29 KIAA1552 ( 726 res) fh16875 ( 726) 71 23.5 29 KIAA1163 ( 437 res) hj05329 ( 437) 69 22.7 30 KIAA1682 ( 775 res) fh23774 ( 775) 71 23.6 30 FLJ00242 ( 804 res) sj07550 ( 804) 71 23.6 30 KIAA1004 ( 1163 res) hj01244 (1163) 72 24.0 32 KIAA0909 ( 1234 res) hk10471 (1234) 72 24.1 33 KIAA0935 ( 952 res) af13188 ( 952) 71 23.7 33 FLJ00330 ( 246 res) sj03258 ( 246) 66 21.7 34 KIAA1719 ( 1050 res) pf00330s1 (1050) 71 23.8 35 FLJ00418 ( 200 res) sj09371 ( 200) 65 21.4 35 KIAA1041 ( 642 res) fh02801 ( 642) 69 23.0 36 FLJ00089 ( 349 res) as00089 ( 349) 66 22.0 40 KIAA1506 ( 3309 res) ff04330 (3309) 74 25.2 41 FLJ00153 ( 497 res) sh06127 ( 497) 67 22.4 42 KIAA0975 ( 1528 res) hj06890 (1528) 71 24.0 42 KIAA1970 ( 519 res) fk07936 ( 519) 67 22.5 43 KIAA1539 ( 543 res) fg02356 ( 543) 67 22.5 44 KIAA1509 ( 1365 res) fh14721 (1365) 70 23.7 46 FLJ00341 ( 2760 res) sf00005 (2760) 72 24.7 49 KIAA0756 ( 1222 res) ff01911 (1222) 69 23.5 50 KIAA1754 ( 594 res) pj02616 ( 594) 66 22.3 53 KIAA0538 ( 816 res) hg03944(revised) ( 816) 67 22.8 54 KIAA0472 ( 365 res) hh00171 ( 365) 64 21.6 54 KIAA0916 ( 1210 res) hk06582s1 (1210) 68 23.3 57 >>KIAA0389 ( 1296 res) hj00061 (1296 aa) initn: 66 init1: 66 opt: 101 Z-score: 110.9 bits: 30.0 E(): 0.56 Smith-Waterman score: 101; 25.362% identity (54.348% similar) in 138 aa overlap (59-191:8-136) 30 40 50 60 70 80 FLJ002 IRTSSMEKPLTVLRVSLYHPTLGPSAFANVPPRLQHDTSPLLLGRGQDAHLQLQLPRLSR :: ..: .:. . :. . .. .. KIAA03 WKQEIVDPPSKMEDGKPVWAPHPTDGFQMGNIVDIGP 10 20 30 90 100 110 120 130 140 FLJ002 RHLSLEPYLEKGSALLAFCLKAL-----SRKGCVWVNGLTLRYLEQVPLSTVNRVSFSGI :..:: .::...::. ... :.: .. .: ::... : .: .: KIAA03 DSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVE--DNCSLMYLNEATLLHNIKVRYSKD 40 50 60 70 80 90 150 160 170 180 190 FLJ002 QMLVRVEEGTSLEAFVCYFHVSPSPLIYRPEAEETDEWEGISQGQPPPGSG .. . : .. : : :: . : :: :: .. ..: : : :: KIAA03 RIYTYV--ANILIAVNPYFDI---PKIYSSEAIKS--YQGKSLGTRPPHVFAIADKAFRD 100 110 120 130 140 KIAA03 MKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKT 150 160 170 180 190 200 >>KIAA0514 ( 483 res) hf00310 (483 aa) initn: 53 init1: 53 opt: 93 Z-score: 106.0 bits: 27.7 E(): 1.1 Smith-Waterman score: 93; 32.308% identity (61.538% similar) in 65 aa overlap (22-82:2-62) 10 20 30 40 50 FLJ002 GALPALPKPAYSLSRAHSCRTRARCAPAIRTSSMEKPLTVLRVSLY--HPTLGPSAFANV : :: . :. :...:.... :: :: .: . KIAA05 NRLRCCHPTQLHSL--PFSLLQAAMSSSHPEPGP--WAPL 10 20 30 60 70 80 90 100 110 FLJ002 PPRLQ--HDTSPLLLGRGQDAHLQLQLPRLSRRHLSLEPYLEKGSALLAFCLKALSRKGC :::: ..: :::.:.. . .:. KIAA05 SPRLQPLSQSSSSLLGEGREQRPELHKTASSTMWQAQLGEASTRPQAPEEEGNPPESMKP 40 50 60 70 80 90 >>KIAA0254 ( 1009 res) ha07011 (1009 aa) initn: 83 init1: 50 opt: 95 Z-score: 105.2 bits: 28.6 E(): 1.2 Smith-Waterman score: 95; 25.954% identity (53.435% similar) in 131 aa overlap (30-159:496-620) 10 20 30 40 50 FLJ002 GALPALPKPAYSLSRAHSCRTRARCAPAIRTSSMEKPLTVLRVSLYHPTLGPSAFANVP : : .:: :: :: ::: : ... : KIAA02 IDTADKEIEQGDVTASVTALLEGPEKTCPSRPSCLEKDLTN-DVSSLDPTLPPVLLSSSP 470 480 490 500 510 520 60 70 80 90 100 110 FLJ002 PR-LQHDTSPLLLGRGQDAHLQLQLPRLSRRHLSLEPYLEKGSALLAFCLKALSRKGCVW : :. : . . :. . .: :.. . : ..:... . : ... . KIAA02 PGPLSSATFSFEPLSSPDGPVIIQNLRITGTITARE---HSGTGFHPYTLYTVKYETA-- 530 540 550 560 570 120 130 140 150 160 170 FLJ002 VNGLTLRYLEQVPLSTVNRVSFSGIQMLVRVEEGTSLEAFVCYFHVSPSPLIYRPEAEET ..: . :.:. :::: ... .:.:: .:. :. KIAA02 LDGENSSGLQQLAYHTVNRRYREFLNLQTRLEEKPDLRKFIKNVKGPKKLFPDLPFGNMD 580 590 600 610 620 630 180 190 FLJ002 DEWEGISQGQPPPGSG KIAA02 SDRVEARKSLLESFLKQLCAIPEIANSEEVQEFLALNTDARIAFVKKPFMVSRIDKMVVS 640 650 660 670 680 690 >>KIAA0527 ( 768 res) hg02246 (768 aa) initn: 67 init1: 44 opt: 94 Z-score: 105.2 bits: 28.2 E(): 1.2 Smith-Waterman score: 94; 34.483% identity (50.000% similar) in 116 aa overlap (8-116:94-200) 10 20 30 FLJ002 GALPALPKPAYSL---SRAHSCR-TRARCAPAIRTSS .:: :: :::.: . . :: : : : . KIAA05 QRRPPGVRRPRRSGSASRASPGSPRSSLSARPARSLRFVSRAQSAEPSGARWAVAWATPN 70 80 90 100 110 120 40 50 60 70 80 90 FLJ002 MEKPLTVLRVSLYHPTL---GPSAFANVPPRLQHDTSPLLLGRGQDAHLQLQLPRLSRRH . :: .: . :. ::: :: : : : : : : ::::: : KIAA05 AARALTRVRWPAHSRTMTAEGPS-----PPARWHRRLP---GLWAAALLLLGLPRLSVRA 130 140 150 160 170 100 110 120 130 140 150 FLJ002 LSLEPYLEKGSALLAFCLKALSRKGCVWVNGLTLRYLEQVPLSTVNRVSFSGIQMLVRVE . ::. .. .. :.: .: .: KIAA05 DGKLFVLESQNGSQGLQLEA-ARLSCKSRGAHLASADELRRVVQDCSFAVCTTGWLADGT 180 190 200 210 220 230 >>KIAA0792 ( 828 res) hk05691 (828 aa) initn: 85 init1: 59 opt: 84 Z-score: 93.9 bits: 26.3 E(): 4.9 Smith-Waterman score: 84; 23.478% identity (46.087% similar) in 115 aa overlap (79-191:662-769) 50 60 70 80 90 100 FLJ002 TLGPSAFANVPPRLQHDTSPLLLGRGQDAHLQLQLPRLSRRHLSLEPYLEKGSALLAFCL :. .. : . . : :::: . : KIAA07 YAWMLCVFTVIVAYSITCPIIAPFGLIYILLKHMVDRHNLYFVYLPAKLEKGIHFAAVNQ 640 650 660 670 680 690 110 120 130 140 150 160 FLJ002 KALSRKGCV-WVNGLT-LRYLEQVPLSTVNRVSFSGIQMLVRVEEGTSLEAFVCYFHVSP . :. :. .. :: ..: . :. . .:. . . : :. :.: KIAA07 ALAAPILCLFWLYFFSFLRLGMKAPATL-----FTFLVLLLTILVCLAHTCFGCFKHLS- 700 710 720 730 740 170 180 190 FLJ002 SPLIYRPEAEETDEWEGISQGQPPPGSG :: :. : .:. .::: KIAA07 -PLNYKTEEPASDKGSEAEAHMPPPFTPYVPRILNGLASERTALSPQQQQQQTYGAIHNI 750 760 770 780 790 800 >>KIAA1100 ( 444 res) hk07907 (444 aa) initn: 63 init1: 63 opt: 81 Z-score: 93.1 bits: 25.2 E(): 5.5 Smith-Waterman score: 81; 27.928% identity (49.550% similar) in 111 aa overlap (27-132:167-271) 10 20 30 40 50 FLJ002 GALPALPKPAYSLSRAHSCRTRARCAPAIRTSSMEK-PLTVLR----VSLYHPTLG : :.. .:.. :. .: : : KIAA11 QHIPGCSAQQLPACSVMFSGQHYPLCCLPPPLIQACTMQQLPVPYQAYPHLISSDHYILH 140 150 160 170 180 190 60 70 80 90 100 110 FLJ002 PSAFANVPPRLQHDTSPLLLGRGQDAHLQLQLPRLSRRHLSLEPYLEKGSALLAFCLKAL : : ::. : .:: :: . :: : ::. ..:. . :. . :. . KIAA11 PPPPAP-PPQPTH-MAPL----GQFVSLQTQHPRMPLQRLDNDVDLRGDQPSLGSFTYST 200 210 220 230 240 250 120 130 140 150 160 170 FLJ002 SRKGCVWVNGLTLRYLEQVPLSTVNRVSFSGIQMLVRVEEGTSLEAFVCYFHVSPSPLIY : : . .. :.:: . :: KIAA11 SAPGPALSPSVPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPP 260 270 280 290 300 310 >>KIAA2011 ( 1091 res) pj02017 (1091 aa) initn: 54 init1: 54 opt: 84 Z-score: 92.8 bits: 26.4 E(): 5.7 Smith-Waterman score: 84; 25.658% identity (44.737% similar) in 152 aa overlap (47-193:19-163) 20 30 40 50 60 70 FLJ002 HSCRTRARCAPAIRTSSMEKPLTVLRVSLYHPTLGPSAFANVPPRLQHDTSPLLLGRGQD : . ::: ...: :: : .: : .. KIAA20 GEGLRGGRAWSKREPRCLHSSAGPS-LSSVSPRSQLWASSGL----SE 10 20 30 40 80 90 100 110 120 130 FLJ002 AHLQLQLPRLSRRHLSLEPYLEKGSALLAFCLKALSRKGC-VWVNGLTLRYLEQVPLSTV : :: :. : : : .. .. :. : . :.: . :. KIAA20 EHAAPLLPAWPRH--PCPPSLTPGPSMAQGAMRFCSEGDCAISPPRCPRRWLPEGPVPQS 50 60 70 80 90 100 140 150 160 170 180 190 FLJ002 NRVSFSG-IQMLVRVEEGTSLEAFVCYFHVSP-SPLIYRPEAE-ETDEWEGISQ-GQPPP .:. : :.: : . .. ..: .:: : . . : : ::::: KIAA20 PPASMYGSTGSLLRRVAGPGPRGRELGRVTAPCTPLRGPPSPRVAPSPWAPSSPTGQPPP 110 120 130 140 150 160 FLJ002 GSG :. KIAA20 GAQSSVVIFRFVEKASVRPLNGLPAPGGLSRSWDLGGVSPPRPTPALGPGSNRKLRLEAS 170 180 190 200 210 220 >>KIAA1844 ( 367 res) fj12009 (367 aa) initn: 65 init1: 65 opt: 80 Z-score: 92.7 bits: 24.9 E(): 5.8 Smith-Waterman score: 80; 30.159% identity (44.444% similar) in 63 aa overlap (6-68:148-208) 10 20 30 FLJ002 GALPALPKPAYSLSRAHSCRTRARCAPAIRTSSME ::. : . :. : : .: : KIAA18 DYRREVMQATATSGFASGMEDKHSSDASSLLPQNILSQTSRHN--DRDYRLPRAETHSSS 120 130 140 150 160 170 40 50 60 70 80 90 FLJ002 KPLTVLRVSLYHPTLGPSAFANVPPRLQHDTSPLLLGRGQDAHLQLQLPRLSRRHLSLEP :. . ::: ::. . : :: : .: KIAA18 TPVQHPIKPVVHPTATPSTVPSSPFTLQSDHQPKKSFDANGASTLSKLPTPTSSVPAQKT 180 190 200 210 220 230 100 110 120 130 140 150 FLJ002 YLEKGSALLAFCLKALSRKGCVWVNGLTLRYLEQVPLSTVNRVSFSGIQMLVRVEEGTSL KIAA18 ERKESTSGDKPVSHSCTTPSTSSASGLNPTSAPPTSASAVPVSPVPQSPIPPLLQDPNLL 240 250 260 270 280 290 >>KIAA0821 ( 1566 res) hh02631 (1566 aa) initn: 82 init1: 50 opt: 83 Z-score: 90.3 bits: 26.5 E(): 7.9 Smith-Waterman score: 83; 29.167% identity (48.333% similar) in 120 aa overlap (2-111:495-611) 10 20 30 FLJ002 GALPALPKPAYSLSRAHSCRTRARCAPAIRT : :: : . . :. . .:: : KIAA08 DYNPRDNQLYVWNNYFVVRYSLEFGPPDPSAGPATSPPLSTTTTARPTPLTSTASPAATT 470 480 490 500 510 520 40 50 60 70 80 FLJ002 SSMEKPLT---VLRVSLYHPTLGPSAFANVP-----PRLQHDTSPLLLGRGQDAHLQLQL . ::: : .. : : : : : :: : . .:: :. . .... ..: KIAA08 PLRRAPLTTHPVGAINQLGPDL-PPATAPVPSTRRPPAPNLHVSPELFCEPREVR-RVQW 530 540 550 560 570 580 90 100 110 120 130 140 FLJ002 PRLSRRHLSLEPYLEKGSALLA-F-CLKALSRKGCVWVNGLTLRYLEQVPLSTVNRVSFS : .. : .: ::. .: : :: :: KIAA08 PATQQGMLVERP-CPKGTRGIASFQCLPALGLWNPRGPDLSNCTSPWVNQVAQKIKSGEN 590 600 610 620 630 640 >>KIAA1043 ( 2126 res) af02720 (2126 aa) initn: 50 init1: 50 opt: 84 Z-score: 90.2 bits: 26.9 E(): 8 Smith-Waterman score: 84; 29.592% identity (50.000% similar) in 98 aa overlap (7-99:1965-2055) 10 20 30 FLJ002 GALPALPKPAYSLSRAHSCRTRARCAPAIRTSSMEK :.:: : : : : :. :: : .... KIAA10 YPSSPYSAHISKSPRNMSPSSGHQSPAGSAPSPALSYSSAGSARSSPADAPDI--DKLKM 1940 1950 1960 1970 1980 1990 40 50 60 70 80 90 FLJ002 PLTVLRVSLYHPTLGPSAFANVPPRLQHDTSPLLLGRGQDAHLQ-----LQLPRLSRRHL .:. : . : . : ::.:.:. . :: . . :.: :: :: KIAA10 AAIDEKVQAVHNL---KMFWQSTP--QHSTGPMKIFRGAPGTMTSKRDVLSLLNLSPRHN 2000 2010 2020 2030 2040 100 110 120 130 140 150 FLJ002 SLEPYLEKGSALLAFCLKALSRKGCVWVNGLTLRYLEQVPLSTVNRVSFSGIQMLVRVEE . : ..: KIAA10 KKEEGVDKLELKELSLQQHDGAPPKAPPNGHWRTETTSLGSLPLPAGPPATAPARPLRLP 2050 2060 2070 2080 2090 2100 194 residues in 1 query sequences 2210800 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:51:10 2009 done: Fri Feb 27 10:51:10 2009 Total Scan time: 0.370 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]