hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/shimazu/full/sh/sh02727/interpro/cnk_1/seq.in
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Query:  sh02727  1512

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                   250.5    1.4e-70  12

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/12     57    99 ..     1    46 []    37.1  2.4e-06
WD40       2/12    102   142 ..     1    46 []    13.7      3.4
WD40       3/12    144   184 ..     1    46 []    11.7        7
WD40       4/12    188   259 ..     1    46 []    39.6  4.2e-07
WD40       5/12    320   369 ..     1    46 []    12.7      4.7
WD40       6/12    372   412 ..     1    46 []    18.5     0.57
WD40       7/12    419   459 ..     1    46 []    23.2    0.037
WD40       8/12    464   515 ..     1    46 []     1.4    3e+02
WD40       9/12    533   568 ..     1    46 []    10.2       12
WD40      10/12    571   617 ..     1    46 []    23.6    0.028
WD40      11/12    632   672 ..     1    46 []    51.2  1.4e-10
WD40      12/12    675   715 ..     1    46 []    30.7   0.0002

Alignments of top-scoring domains:
WD40: domain 1 of 12, from 57 to 99: score 37.1, E = 2.4e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + +++ +l gHt   +V++ +fs++ g     nl a++s+Dgt+++W
     sh02727    57    PfRVIGELVGHTE--RVSGFTFSHHPGQ---YNLCATSSdDGTVKIW 98   

                   d<-*
                   d   
     sh02727    99 D    99   

WD40: domain 2 of 12, from 102 to 142: score 13.7, E = 3.4
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t++++ +   H++   ++++ +sp       ++l++sg++ g + ++
     sh02727   102    TkTVVTEHALHQH--TISTLHWSPRV-----KDLIVSGDeKGVVFCY 141  

                   d<-*
                       
     sh02727   142 W    142  

WD40: domain 3 of 12, from 144 to 184: score 11.7, E = 7
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++  + l        + +++ sp++     ++l+a g +Dg + + 
     sh02727   144    NrNDSQHLFIEPR--TIFCLTCSPHH-----EDLVAIGYkDGIVVII 183  

                   d<-*
                   d   
     sh02727   184 D    184  

WD40: domain 4 of 12, from 188 to 259: score 39.6, E = 4.2e-07
                   *->t.kllrtlkgHtgespVtsvafspdggss..................
                      ++++++ l+gH++  +++s+a++p  g++  + ++++++++ + +++
     sh02727   188    KgEVIHRLRGHDD--EIHSIAWCPLPGEDclsinqeetseeaeitng 232  

                   ........dspnllasgs.DgtirlWd<-*
                   +   + +  ++ +la+gs+D tir+W+   
     sh02727   233 navaqapvTKGCYLATGSkDQTIRIWS    259  

WD40: domain 5 of 12, from 320 to 369: score 12.7, E = 4.7
                   *->t.kllrtlk.......gHtgespVtsvafspdggssdspnllasgs.
                      +++  +tl + +++++ H+    V  ++  ++    d+++ll+s s 
     sh02727   320    SwRRKYTLFsassegqNHSR--IVFNLCPLQTE---DDKQLLLSTSm 361  

                   DgtirlWd<-*
                   D+ +++Wd   
     sh02727   362 DRDVKCWD    369  

WD40: domain 6 of 12, from 372 to 412: score 18.5, E = 0.57
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t ++  tl+   g    +s+afs+ +        la g +Dg ir+W
     sh02727   372    TlECSWTLPSLGG--FAYSLAFSSVD-----IGSLAIGVgDGMIRVW 411  

                   d<-*
                   +   
     sh02727   412 N    412  

WD40: domain 7 of 12, from 419 to 459: score 23.2, E = 0.037
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +  +   ++g ++   Vt+++++p+      + +la g +Dg++ l+
     sh02727   419    NyDVKNFWQGVKS--KVTALCWHPTK-----EGCLAFGTdDGKVGLY 458  

                   d<-*
                   d   
     sh02727   459 D    459  

WD40: domain 8 of 12, from 464 to 515: score 1.4, E = 3e+02
                   *->t.kllrtlkgHtgespVtsvafspdggss.......dspnllasgs.
                      ++ ++++   H++   V+++a+ p   + + +++++ ++  l+s+++
     sh02727   464    KpPQISSTY-HKK--TVYTLAWGPPVPPMslggegdRPSLALYSCGg 507  

                   DgtirlWd<-*
                    g +   +   
     sh02727   508 EGIVLQHN    515  

WD40: domain 9 of 12, from 533 to 568: score 10.2, E = 12
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t++  ++l+ Ht       +++  dg      +++a g +Dg+i ++
     sh02727   533    TnSIKYKLPVHTE------ISWKADG------KIMALGNeDGSIEIF 567  

                   d<-*
                       
     sh02727   568 Q    568  

WD40: domain 10 of 12, from 571 to 617: score 23.6, E = 0.028
                   *->t.kllrtlkgHtgespVtsvafspdggss.dspnllasgs.Dgtirl
                      + kl++t++ H +   V+++++++ +gs++  + l+asgs++  i++
     sh02727   571    NlKLICTIQQHHK--LVNTISWHHEHGSQpELSYLMASGSnNAVIYV 615  

                   Wd<-*
                    +   
     sh02727   616 HN    617  

	[output cut off at A = 10 top alignments]
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