hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/shimazu/full/sh/sh02727/interpro/cnk_1/seq.in
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Query:  sh02727  1512

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                       220.7    2.1e-62  12

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/12     59    99 ..     1    38 []    42.3  1.1e-08
WD40       2/12    104   142 ..     1    38 []     4.5       57
WD40       3/12    147   184 ..     1    38 []    11.1      8.6
WD40       4/12    190   259 ..     1    38 []    47.5  2.9e-10
WD40       5/12    329   369 ..     1    38 []    13.9      3.9
WD40       6/12    374   412 ..     1    38 []    13.1      4.9
WD40       7/12    421   459 ..     1    38 []    19.6    0.077
WD40       8/12    465   515 ..     1    38 []     3.7       71
WD40       9/12    535   568 ..     1    38 []     0.7  1.7e+02
WD40      10/12    573   617 ..     1    38 []    15.7      1.1
WD40      11/12    634   672 ..     1    38 []    49.5  7.5e-11
WD40      12/12    677   715 ..     1    38 []    27.1  0.00042

Alignments of top-scoring domains:
WD40: domain 1 of 12, from 59 to 99: score 42.3, E = 1.1e-08
                   *->eclavl.gHtspVtcvafspd..sgpllasgSrDgtikiWd<-*
                       ++ +l gHt  V+   fs+++++++l+a++S+Dgt+kiWd   
     sh02727    59    RVIGELvGHTERVSGFTFSHHpgQYNLCATSSDDGTVKIWD    99   

WD40: domain 2 of 12, from 104 to 142: score 4.5, E = 57
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++++++  H+++++ + +sp    l++sg + g +  +    
     sh02727   104    TVVTEHaLHQHTISTLHWSPRVKDLIVSGDEKGVVFCYW    142  

WD40: domain 3 of 12, from 147 to 184: score 11.1, E = 8.6
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      + ++ +     ++ c+ +sp++  l+a g  Dg + i d   
     sh02727   147    DSQHLFiEP-RTIFCLTCSPHHEDLVAIGYKDGIVVIID    184  

WD40: domain 4 of 12, from 190 to 259: score 47.5, E = 2.9e-10
                   *->eclavl.gHtspVtcvafspd..........................
                      e+++ l+gH + + ++a++p ++++  + + ++++++++ +++++ +
     sh02727   190    EVIHRLrGHDDEIHSIAWCPLpgedclsinqeetseeaeitngnava 236  

                   .....sgpllasgSrDgtikiWd<-*
                    ++ + g++la+gS D ti+iW+   
     sh02727   237 qapvtKGCYLATGSKDQTIRIWS    259  

WD40: domain 5 of 12, from 329 to 369: score 13.9, E = 3.9
                   *->eclavl.gHtspVtcvafspd..sgpllasgSrDgtikiWd<-*
                         ++ + H+  V  ++  + +++ +ll+s S D+ +k Wd   
     sh02727   329    SASSEGqNHSRIVFNLCPLQTedDKQLLLSTSMDRDVKCWD    369  

WD40: domain 6 of 12, from 374 to 412: score 13.1, E = 4.9
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ec  +l+   ++ +++afs  +   la g  Dg i++W+   
     sh02727   374    ECSWTLpSLGGFAYSLAFSSVDIGSLAIGVGDGMIRVWN    412  

WD40: domain 7 of 12, from 421 to 459: score 19.6, E = 0.077
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      +++   +g +s Vt+++++p    +la g +Dg++ ++d   
     sh02727   421    DVKNFWqGVKSKVTALCWHPTKEGCLAFGTDDGKVGLYD    459  

WD40: domain 8 of 12, from 465 to 515: score 3.7, E = 71
                   *->eclavl.gHtspVtcvafspd............sgpllasgSrDgti
                       ++ + + H+++V+ +a+ p+ ++ + +++++ ++  l+s++  g +
     sh02727   465    PPQISStYHKKTVYTLAWGPPvppmslggegdrPSLALYSCGGEGIV 511  

                   kiWd<-*
                      +   
     sh02727   512 LQHN    515  

WD40: domain 9 of 12, from 535 to 568: score 0.7, E = 1.7e+02
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        ++ l+ H    t +++  d g+++a g +Dg+i i+    
     sh02727   535    SIKYKLpVH----TEISWKAD-GKIMALGNEDGSIEIFQ    568  

WD40: domain 10 of 12, from 573 to 617: score 15.7, E = 1.1
                   *->eclavl.gHtspVtcvafspd......sgpllasgSrDgtikiWd<-
                      +++ +++ H + V+ ++++++ ++ ++ + l+asgS +  i++ +  
     sh02727   573    KLICTIqQHHKLVNTISWHHEhgsqpeLSYLMASGSNNAVIYVHN   617  

                   *
                    
     sh02727     -   -    

WD40: domain 11 of 12, from 634 to 672: score 49.5, E = 7.5e-11
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      e+ ++l+gHt+ +t+va+sp++  +l+s+S Dgt  +Wd   
     sh02727   634    EPYRTLsGHTAKITSVAWSPHHDGRLVSASYDGTAQVWD    672  

WD40: domain 12 of 12, from 677 to 715: score 27.1, E = 0.00042
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      e+l  ++gH++   cva+sp ++ +++sg +D +++ W    
     sh02727   677    EPLCNFrGHQGRLLCVAWSPLDPDCIYSGADDFCVHKWL    715  

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