# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh02613.fasta.huge -Q ../query/FLJ00289.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00289, 245 aa vs ./tmplib.10216 library 2210749 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.5299+/-0.00502; mu= 19.1024+/- 0.339 mean_var=146.6244+/-32.246, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.105918 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00366 ( 282 res) sh05203 ( 282) 162 34.8 0.0055 KIAA1461 ( 1498 res) fh17578 (1498) 121 29.8 0.95 KIAA1522 ( 1044 res) fh14706(revised) (1044) 118 29.1 1.1 FLJ00070 ( 1382 res) as00070 (1382) 113 28.5 2.1 KIAA1759 ( 983 res) fh22011s1 ( 983) 107 27.4 3.4 KIAA2035 ( 1135 res) ff09201 (1135) 103 26.9 5.6 FLJ00227 ( 196 res) sj06355 ( 196) 94 24.2 6.2 KIAA0775 ( 639 res) hk05255 ( 639) 99 25.8 6.5 KIAA1438 ( 1075 res) hk07374s1 (1075) 101 26.5 6.7 KIAA1744 ( 855 res) pj01516 ( 855) 99 26.0 7.4 KIAA1271 ( 542 res) hk06527 ( 542) 96 25.2 8.2 FLJ00324 ( 376 res) sj01157 ( 376) 94 24.7 8.5 KIAA0913 ( 1881 res) fh07519s2 (1881) 100 26.8 9.8 KIAA0945 ( 797 res) hj04760 ( 797) 96 25.5 9.9 KIAA0613 ( 734 res) hg01088b ( 734) 94 25.2 12 KIAA1425 ( 495 res) hj01333(revised) ( 495) 92 24.6 12 FLJ00011 ( 394 res) as00011 ( 394) 90 24.1 13 KIAA0309 ( 3053 res) hg00096s1 (3053) 97 26.7 17 KIAA0482 ( 1332 res) hj01880 (1332) 92 25.3 19 KIAA0597 ( 971 res) hj02980 ( 971) 90 24.8 20 KIAA0346 ( 1682 res) hg01508s1 (1682) 92 25.5 22 KIAA1623 ( 1236 res) fj04650 (1236) 90 24.9 23 KIAA1394 ( 1003 res) hj07546 (1003) 89 24.6 23 KIAA1639 ( 2584 res) af14886 (2584) 93 26.0 24 KIAA2032 ( 952 res) eh00720 ( 952) 88 24.4 25 KIAA1952 ( 735 res) fj14047 ( 735) 86 23.9 27 FLJ00252 ( 819 res) sj09394 ( 819) 86 24.0 29 FLJ00378 ( 855 res) sj00210 ( 855) 86 24.1 29 FLJ00263 ( 764 res) sj01530 ( 764) 85 23.8 31 KIAA1737 ( 400 res) pj00125 ( 400) 82 22.9 31 KIAA1755 ( 1110 res) fg04230(revised) (1110) 86 24.3 33 KIAA1471 ( 1421 res) fj02383s1 (1421) 87 24.6 34 KIAA1768 ( 1207 res) ph00672(revised) (1207) 86 24.3 35 KIAA1433 ( 652 res) hh05535 ( 652) 83 23.4 35 KIAA1778 ( 341 res) pg00707 ( 341) 80 22.5 36 KIAA1662 ( 1653 res) fj03879s1 (1653) 87 24.7 36 FLJ00280 ( 440 res) sh01728 ( 440) 81 22.8 36 KIAA0722 ( 1066 res) hk02030s1 (1066) 85 24.1 36 KIAA1276 ( 1068 res) fh00139s1 (1068) 85 24.1 36 KIAA0584 ( 738 res) hj00933 ( 738) 83 23.5 37 KIAA1963 ( 488 res) ph00179 ( 488) 81 22.9 38 KIAA1679 ( 1536 res) fh22954 (1536) 86 24.5 39 KIAA1783 ( 1560 res) fg01285 (1560) 86 24.5 39 FLJ00008 ( 217 res) as00008 ( 217) 77 21.7 39 FLJ00099 ( 217 res) as00099 ( 217) 77 21.7 39 FLJ00358 ( 217 res) sh03894 ( 217) 77 21.7 39 FLJ00276 ( 426 res) sh00612 ( 426) 80 22.6 39 KIAA1775 ( 858 res) hk03826 ( 858) 83 23.6 40 FLJ00209 ( 358 res) sj05025 ( 358) 79 22.3 40 KIAA0603 ( 1348 res) hg01488b (1348) 85 24.2 40 >>FLJ00366 ( 282 res) sh05203 (282 aa) initn: 102 init1: 77 opt: 162 Z-score: 146.9 bits: 34.8 E(): 0.0055 Smith-Waterman score: 166; 31.492% identity (53.039% similar) in 181 aa overlap (29-196:47-208) 10 20 30 40 50 FLJ002 VMVMPLHCSLGDRTRPYLKKKKPWSALCYLPPTCGVSHGVTVYPCTQQ-PGPCPSPSR .::: .: . ::. : :: ::.: FLJ003 VLSSASPGWSLLPTAMSGECLHSTCPAPRLFLPPPLAVPLS-RWPPCSCLIPPPC-SPGR 20 30 40 50 60 70 60 70 80 90 100 110 FLJ002 AAATELNSWSVVLGSLQREGLSPGAEEVGVAALQLPRAYNHYSQGS-----DLALLQLAH :::: .: : .:: . : :.. :: .: : .: :..::.:: FLJ003 HF--------VVLGEYDR---SSNAEPLQV--LSVSRAITHPSWNSTTMNNDVTLLKLAS 80 90 100 110 120 120 130 140 150 160 FLJ002 PTTHT----PLCLPQPAHRFPFGASCWATGWDQDTSDGKCWPRLKLGEALCLPSVTVSAP :. .: :.:: . . . : .: .::: . .. :. : .: . . :: :::. FLJ003 PAQYTTRISPVCLASSNEALTEGLTCVTTGWGRLSGVGNVTPA-HL-QQVALPLVTVN-- 130 140 150 160 170 170 180 190 200 210 220 FLJ002 NCPGFQSPLLPRSQTLAP---APSLSPAPGTLRNLRLRLISRPTCNCIYNQLHQRHLSNP .: . . . :. : : : . .:.: FLJ003 QCRQYWGSSITDSMICAGGAGASSCQVSPSTRSSALSCGIPPQPPLLNSPSLFPLRVTPE 180 190 200 210 220 230 230 240 FLJ002 ARPGMLCGGPQPGVQGPCQV FLJ003 ALLSARRETHGCLLVLSPGAPKTAMCAHLLCILELASSAPGSTRS 240 250 260 270 280 >>KIAA1461 ( 1498 res) fh17578 (1498 aa) initn: 80 init1: 57 opt: 121 Z-score: 106.8 bits: 29.8 E(): 0.95 Smith-Waterman score: 121; 23.282% identity (48.473% similar) in 262 aa overlap (1-241:313-563) 10 20 FLJ002 VMVMPLHCSLGDRT---RPYLKKKKPWSAL :: :. :... : ....: : . KIAA14 MLHGSPVQSSCAMAGRTNIPLSPTLTTKSPVMKKPM-CNFSTNMEIPRAMFHHKPPQGPP 290 300 310 320 330 340 30 40 50 60 70 FLJ002 CYLPPTCGVSHGVTVYPCTQQPGPC----PSPSRAAATE---LNSWSV---VLGSLQREG ::.:.... : :.. : : ::. . . .: : : ... . KIAA14 PPPPPSCALQKK----PLTSEKDPLGILDPIPSKPVNQNPVIINPTSFHSNVHSQVPMMN 350 360 370 380 390 80 90 100 110 120 130 FLJ002 LS-PGAEEVGVAALQLPRAY-NHYSQGSDLALLQLAHPTTHTPLCLPQPAHRFPFGASCW .: : : . : :: . .:...:: . .: . :. .: . .:.: . : . KIAA14 VSMPPAVVPLPSNLPLPTVKPGHMNHGSHVQRVQHSASTSLSPSPVTSPVHMMGTGIGRI 400 410 420 430 440 450 140 150 160 170 180 190 FLJ002 ATGWDQDTSDGKCWPRLKLGEALCLPSVTVSAPNCPGFQSPLLPRSQTLAPAPSLSPAPG .. ... :.. . .. :..: :. . : : ::: .: ::. .:. KIAA14 EASPQRSRSSSTSSDHGNFMMPPVGPQATSSGIKVP----PRSPRSTIGSPRPSMPSSPS 460 470 480 490 500 510 200 210 220 230 240 FLJ002 TLRN--LRLRLISRPTCNCIYNQLHQRHLSNPARPGMLCGGP----QPGVQGPCQV : . . . : : : : :. :. : : :. :::. : KIAA14 TKSDGHHQYKDIPNPLIAGISNVLNTP--SSAAFPTASAGSSSVKSQPGLLGMPLNQILN 520 530 540 550 560 570 KIAA14 QHNAASFPASSLLSAAAKAQLANQNKLAGNNSSSSSNSGAVAGSGNTEGHSTLNTMFPPT 580 590 600 610 620 630 >>KIAA1522 ( 1044 res) fh14706(revised) (1044 aa) initn: 116 init1: 68 opt: 118 Z-score: 105.7 bits: 29.1 E(): 1.1 Smith-Waterman score: 118; 26.693% identity (43.825% similar) in 251 aa overlap (10-242:469-697) 10 20 30 FLJ002 VMVMPLHCSLGDRTRPYLKKKKPWSALCYLPPTCGVSHG :: .: .:..: ::: : :.: KIAA15 VSLRKLKRPPPPPRRTHSLHQRGLAVPDGPLGLPPKPE-RKQQPQLPR---PPTTGGSEG 440 450 460 470 480 490 40 50 60 70 80 90 FLJ002 VTVYPCTQQPG----PCPSPS---RAAATELNSWSVVLGSLQREGLSPGAEEVGVAALQL . . :: .:. : ::. : . . : : .. : .: :.:. KIAA15 AGAAPCPPNPANSWVPGLSPGGSRRPPRSPERTLSPSSGYSSQSG-TPTLPPKGLAG--- 500 510 520 530 540 550 100 110 120 130 140 150 FLJ002 PRAYNHYSQGSDLALLQLAHPTTHTPLCLPQPAHRFPFGASCWATGWDQDTSDGKCWPRL : : : :. : .: : : : . . . : ... : :: . :.. KIAA15 PPA----SPGKA----QPPKPERVTSLRSPGASVSSSLTSLC-SSSSDPAPSD-RSGPQI 560 570 580 590 600 160 170 180 190 200 FLJ002 --KLGEALCLPS-VTVSAPNCPGFQSPLLPRSQTLAPAPSLS-PA--PGTLRNLRLRLIS ::. . .: : :: : : ::: . : ::.:. :: :: . . : KIAA15 LTPLGDRFVIPPHPKVPAPFSP---PPSKPRSPNPA-APALAAPAVVPGPVSTTDASPQS 610 620 630 640 650 210 220 230 240 FLJ002 RPTCNCIYNQLHQ-----RHLSNPARPGMLCGGPQPGVQGPCQV :: . . :.. . : : : : : .. : KIAA15 PPTPQTTLTPLQESPVISKDQSPPPSPPPSYHPPPPPTKKPEVVVEAPSASETAEEPLQD 660 670 680 690 700 710 KIAA15 PNWPPPPPPAPEEQDLSMADFPPPEEAFFSVASPEPAGPSGSPELVSSPAASSSSATALQ 720 730 740 750 760 770 >>FLJ00070 ( 1382 res) as00070 (1382 aa) initn: 79 init1: 79 opt: 113 Z-score: 100.5 bits: 28.5 E(): 2.1 Smith-Waterman score: 119; 34.247% identity (52.055% similar) in 73 aa overlap (135-198:6-78) 110 120 130 140 150 160 FLJ002 LALLQLAHPTTHTPLCLPQPAHRFPFGASCWATGWDQDTSD----GKCWPRLKLGEALCL ::..: ..: . ::: : : FLJ000 VRGLVWASSWGWEVSALPAVQSASPRLPPGPRGPL 10 20 30 170 180 190 200 210 FLJ002 PSVTVSA-PNCP----GFQSPLLPRSQTLAPAPSLSPAPGTLRNLRLRLISRPTCNCIYN : .. .: : :: : .:::: . .: :. : : .:: FLJ000 PPASPAALPRCPLPSPGAPGPLLPSGAGPSPRPGAPPLPRVLRPRMPGPRGAAGGLAPEM 40 50 60 70 80 90 220 230 240 FLJ002 QLHQRHLSNPARPGMLCGGPQPGVQGPCQV FLJ000 RGAGAAGLLALLLLLLLLLGLGGRVEGGPAGERGAGGGGALARERFKVVFAPVICKRTCL 100 110 120 130 140 150 >>KIAA1759 ( 983 res) fh22011s1 (983 aa) initn: 36 init1: 36 opt: 107 Z-score: 96.8 bits: 27.4 E(): 3.4 Smith-Waterman score: 107; 26.754% identity (42.982% similar) in 228 aa overlap (18-229:11-216) 10 20 30 40 50 FLJ002 VMVMPLHCSLGDRTRPYLKKKKPW-SALCYLPPTCGVSHGVTVY-PCTQQPGPCPSPSRA : .. : : : : . .:... : .: : . KIAA17 ASGCQSCPACLMERMNWLSRLASRGPGHRIPQGANLQTPVMADPETCLMVFK- 10 20 30 40 50 60 70 80 90 100 110 FLJ002 AATELNSWSVVLGSLQREGLSPGAEEVGVAALQLPRAYNHYSQGSDLALLQLAHPTTHTP : :: :. :.:.: : : :. :. : :: : : . : :.. : KIAA17 -----NHWSQVVRILERQG--PRAAPGGADDLSAVR--NHTYQMLTLLAEDRAVPSAPTG 60 70 80 90 100 120 130 140 150 160 170 FLJ002 LCLPQPAHRFPFGAS------CWATGWDQDTSDGKCWPRLKLGEALCLPSVTVSAPNCPG : : .: . . : ::. .:: : .: : : . :: : KIAA17 ---PGPLLEFALHEDLLTRVLTWQLQWDE-LGDGVEERR---AEQLKLFEMLVSEARQPL 110 120 130 140 150 180 190 200 210 220 FLJ002 FQ-SPLLPRSQTLA-----PAPSLSPAPGTLRNLRLRLISRPTCNCIYNQ--LHQRHLSN .. .:. :: :.:: ::: . : :. : :. .. : . :. KIAA17 LRHGPVREALLTLLDACGRPVPS-SPA----LDEGLVLLLSQLCVCVAQEPSLLEFFLQP 160 170 180 190 200 210 230 240 FLJ002 PARPGMLCGGPQPGVQGPCQV : .:: KIAA17 PPEPGAAPRLLLFSRLVPFVHREGTLGQQARDALLLLMALSAGSPTVGRYIADHSYFCPV 220 230 240 250 260 270 >>KIAA2035 ( 1135 res) ff09201 (1135 aa) initn: 79 init1: 49 opt: 103 Z-score: 93.0 bits: 26.9 E(): 5.6 Smith-Waterman score: 103; 27.536% identity (50.000% similar) in 138 aa overlap (110-242:335-459) 80 90 100 110 120 130 FLJ002 PGAEEVGVAALQLPRAYNHYSQGSDLALLQLAHPTTHTPLCLPQPAHRFPFGASCWATGW : .: . : :: : ..:::. . KIAA20 LLDKVLNTDEELINEDERELEELRKRGITPLPKPPPGVGL-LPTPPEHFPFSDP--EDDF 310 320 330 340 350 360 140 150 160 170 180 190 FLJ002 DQDTSDG-KCWPRLKLGEALCLPSVTVSAPNCPGFQSPLLPRSQTLAPAPSL---SPAPG . : :: . : .: : . :.: .. . : . : . : . :.:.. :: : KIAA20 QTDFSDDFRKIP--SLFEIVVKPTVDLA--HKIGRKPPAFYTSAS-PPGPQFQGSSPHPQ 370 380 390 400 410 200 210 220 230 240 FLJ002 TLRNLRLRLISRPTCNCIYNQLHQRHLSNPARPGML-CGGPQPGVQGPCQV . . : : . ..: :. . .:. :: :.:: ::. : KIAA20 HIYSSG----SSPGPGPNMSQGHSSPVMHPGSPGHHPCAGP-PGLPVPQSPPLPPGPPEI 420 430 440 450 460 470 KIAA20 VGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPGHVMKVPRENHCSPGSSYQQSPGEMQLN 480 490 500 510 520 530 >>FLJ00227 ( 196 res) sj06355 (196 aa) initn: 107 init1: 79 opt: 94 Z-score: 92.1 bits: 24.2 E(): 6.2 Smith-Waterman score: 94; 28.155% identity (48.544% similar) in 103 aa overlap (29-129:93-192) 10 20 30 40 50 FLJ002 VMVMPLHCSLGDRTRPYLKKKKPWSALCYLPPTCGVSHGVTVYPCTQQPGPCPSPSRA .::: . . . . ::: :: .: FLJ002 SGRGALLPRAASRPRPRALGAGVGKEGAPRHLPPLQTKAASQILENGEEAPGPDPSLDRM 70 80 90 100 110 120 60 70 80 90 100 110 FLJ002 AATELNSWSVVLGSLQREGLSPGAEEVGVAALQLPRAYNHYSQGSDLALLQLA--HPTTH .. . :. ....::: .::.. : : : . : : : : : . FLJ002 LSSSSSVSSLNSSTVRREGGDPGGRGVDPFRCVAP-ACPSLAAGPTAAAPQPATYDPGLK 130 140 150 160 170 180 120 130 140 150 160 170 FLJ002 TPLCLPQPAHRFPFGASCWATGWDQDTSDGKCWPRLKLGEALCLPSVTVSAPNCPGFQSP : : :.: .: : FLJ002 PPRC-PRP-RREPCERP 190 >>KIAA0775 ( 639 res) hk05255 (639 aa) initn: 110 init1: 80 opt: 99 Z-score: 91.8 bits: 25.8 E(): 6.5 Smith-Waterman score: 99; 32.530% identity (50.602% similar) in 83 aa overlap (166-242:380-455) 140 150 160 170 180 190 FLJ002 ATGWDQDTSDGKCWPRLKLGEALCLPSVTVSAPNCPGFQSPLLPRSQTLAPAPS----LS .:: :: :::. : . . : :: : KIAA07 QARSGGQRHSPLSQRHSPAPQCPSPSPPARAAPPCPPCQSPVPQRRSPVPPCPSPQQRRS 350 360 370 380 390 400 200 210 220 230 240 FLJ002 PA-PGTLRNL-RLRLISRPTCNCIYNQLHQRHLSNPARPGMLCGGPQPGVQGPCQV :: :. . . : :.:. . ::. .:. :. : .::: : KIAA07 PASPSCPSPVPQRRSPVPPSCQ---SPSPQRR--SPVPPS--CPAPQPRPPPPPPPGERT 410 420 430 440 450 460 KIAA07 LAERAYAKPPSHHVKAGFQGRRSYSELAEGAAYAGASPPWLQAEAATLPKPRAYGSELYG 470 480 490 500 510 520 >>KIAA1438 ( 1075 res) hk07374s1 (1075 aa) initn: 89 init1: 55 opt: 101 Z-score: 91.5 bits: 26.5 E(): 6.7 Smith-Waterman score: 101; 30.000% identity (48.824% similar) in 170 aa overlap (47-209:706-862) 20 30 40 50 60 70 FLJ002 YLKKKKPWSALCYLPPTCGVSHGVTVYPCTQQPGPCPSPSRAAATELNSWSVVLGSLQRE :::.: :.: . . . ::.: .:... KIAA14 KQIEALTRMLRQKQQLVERLKLQLEQEKRAQQPAPAPAPLGTPVKQENSFSSC--QLSQQ 680 690 700 710 720 730 80 90 100 110 120 130 FLJ002 GLSPGAEEVGVAALQLPRAYNHYSQGSDLALLQLAHPTTHTPLCLPQPAHRFPFGASCWA :.: :. . .: : : :: : . . :.. . :: . : : KIAA14 PLGP-AHPFN-PSLAAP-ATNHI----DPCAVAPGPPSVVVKQEALQPEPE-PVPAPQLL 740 750 760 770 780 140 150 160 170 180 FLJ002 TGWDQDTS--DGKCWPRL---KLGEALCLPSVTVSAPNCPGFQS--PLLPRSQTLAPAPS : : : : : : . : : : .:: . . ::..: : : :: .:::. KIAA14 LG-PQGPSLIKGVAPPTLITDSTGTHLVL-TVTNKNADSPGLSSGSPQQPSSQPGSPAPA 790 800 810 820 830 840 190 200 210 220 230 240 FLJ002 LSPAPGTLRNLRLRLISRPTCNCIYNQLHQRHLSNPARPGMLCGGPQPGVQGPCQV : : :.. :.. :: KIAA14 PS-AQMDLEHPLQPLFGTPTSLLKKEPPGYEEAMSQQPKQQENGSSSQQMDDLFDILIQS 850 860 870 880 890 900 >>KIAA1744 ( 855 res) pj01516 (855 aa) initn: 126 init1: 59 opt: 99 Z-score: 90.7 bits: 26.0 E(): 7.4 Smith-Waterman score: 104; 24.719% identity (48.876% similar) in 178 aa overlap (31-190:622-793) 10 20 30 40 50 FLJ002 VMVMPLHCSLGDRTRPYLKKKKPWSALCYLPPTCGVSHG-VTVYPC--TQQPGPCPSPSR : . :.:.. .:: : :. ::: :::: KIAA17 SYPLPGSPLAAGVLPSQNSSVLSTAATSPQPASAGISQAQATVPPAVPTHTPGPAPSPSP 600 610 620 630 640 650 60 70 80 90 100 110 FLJ002 A-----AATELNSWSVVLGSLQREGLSPGAEEVGVAAL-QLPRAYNHYSQGSDLALLQLA : : .. .:. ..:. . .: ...: . . : . ..:. ::: KIAA17 ALTHSTAQSDSTSYISAVGNTNANGTVVPPQQMGSGPCGSCGRRCSCGTNGN----LQLN 660 670 680 690 700 120 130 140 150 160 FLJ002 HPTTHTPLCLPQPAHRFP----FGASCWATGWDQ-DTSDGK----CWPRLKLGEALCLPS . . : .: : .: : . . : .. .: :.:. :. ...: KIAA17 --SYYYPNPMPGPMYRVPSFFTLPSICNGSYLNQAHQSNGNQLPFFLPQTPYANGLVHDP 710 720 730 740 750 760 170 180 190 200 210 220 FLJ002 VTVSAPNCPGFQSPLLPRSQTLAPAPSLSPAPGTLRNLRLRLISRPTCNCIYNQLHQRHL : : : : . : . :::.. KIAA17 VMGSQANYGMQQMAGFGRFYPVYPAPNVVANTSGSGPKKNGNVSCYNCGVSGHYAQDCKQ 770 780 790 800 810 820 245 residues in 1 query sequences 2210749 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:51:08 2009 done: Fri Feb 27 10:51:08 2009 Total Scan time: 0.400 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]