hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/shimazu/full/sh/sh01521/interpro/cnk_1/seq.in
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Query:  sh01521  1546

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PH       Pleckstrin homology domain.                     39.6    4.2e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/1    1293  1401 ..     1    82 []    39.6  4.2e-07

Alignments of top-scoring domains:
PH: domain 1 of 1, from 1293 to 1401: score 39.6, E = 4.2e-07
                   *->vikeGwLlkks......k.swkkryfvLfngvLlyyksk........
                      +  +G+Ll++ + +   +++   r+++Lf++ Ll+ k k+++++++ 
     sh01521  1293    LKEQGQLLHRDpftvicGrKKCLRHVFLFEHLLLFSKLKgpeggsem 1339 

                   .kpkgsipLsgcsvre.p.....cFeivt.dr....tlllqAeseeeree
                     +k  +   ++ ++e+ ++++ cFe++++ r+ ++ ++lqA s+e + +
     sh01521  1340 fVYKQAFKTADMGLTEnIgdsglCFELWFrRRrareAYTLQATSPEIKLK 1389 

                   Wvealqsaiaka<-*
                   W +++ +++ ++   
     sh01521  1390 WTSSIAQLLWRQ    1401 

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