hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/shimazu/full/sh/sh00381/interpro/cnk_1/seq.in
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Query:  sh00381  448

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MYSc     Myosin. Large ATPases.                        -126.3    7.5e-23   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MYSc       1/1       1   397 [.     1   771 []  -126.3  7.5e-23

Alignments of top-scoring domains:
MYSc: domain 1 of 1, from 1 to 397: score -126.3, E = 7.5e-23
                   *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav
                                                                     
     sh00381     -    ----------------------------------------------- -    

                   NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre
                                                                     
     sh00381     - -------------------------------------------------- -    

                   keNQsIiISGESGAGKTEatKkimqYLAavsgsvesvedqiLesNPiLEA
                                                                     
     sh00381     - -------------------------------------------------- -    

                   FGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEKSRVVsQakg
                                                                     
     sh00381     - -------------------------------------------------- -    

                   ERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqggtpfankrys
                            LL+G  + +++el+L++   +p  Y+++ qg+         
     sh00381     1 ---------LLRGSEDKQLHELHLER---NPAVYNFTHQGA--------- 29   

                   sgcltvd.giD.DaeeFkeTdEvtlkAmrvlGfseeEqesIFrilAAILH
                   + + tv +  D+D +  ++++E    Amrv+Gfs eE+es+ rilAAILH
     sh00381    30 GLNMTVHsALDsDEQSHQAVTE----AMRVIGFSPEEVESVHRILAAILH 75   

                   LGNieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpeeLekaLtkR
                   LGNieF e+++ g+ + ++ + va e  ++ +AeL   + +  +++L+ R
     sh00381    76 LGNIEFVETEE-GGLQKEGLA-VAEEALVDHVAELTATPRDLVLRSLLAR 123  

                   kiktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWLVkrINksl..
                   ++  gg   + i k ++  +A+yaRDA AKa+Y RLF W+V+rIN+ +++
     sh00381   124 TVASGGR--ELIEKGHTAAEASYARDACAKAVYQRLFEWVVNRINSVMep 171  

                   .........sayfIGVLDIyGFEiFekNSFEQfCINyaNEKLQQfFnqhv
                   +++++++++++++IGVLDIyGFE+F +NSFEQfCINy+NEKLQQ+F+q++
     sh00381   172 rgrdprrdgKDTVIGVLDIYGFEVFPVNSFEQFCINYCNEKLQQLFIQLI 221  

                   FKlEQEEYerEGIeWtfIdFfliDNQpciDLIEkKgkrPlGIlslLDEeC
                   +K+EQEEYerEGI W  +++f  +N  ++DL+E +   + GIl+ LDE+C
     sh00381   222 LKQEQEEYEREGITWQSVEYF--NNATIVDLVERP---HRGILAVLDEAC 266  

                   lfHAqPkgTDqtFleKLnkalyhqhhkkhphfskprkSlkk.gkp.kkrf
                        +  TD  Fl+ L     + hh  h h+++      +++ p +++ 
     sh00381   267 SS--AGTITDRIFLQTL-----DMHHRHHLHYTS------RqVPPaVPVP 303  

                   grtaFiikHYAGdVtYnveGFLeKNkDtLfedl...ieLlqsSknplias
                   ++        AG  +   + +      + ++    + +L ++++  +  +
     sh00381   304 PQ-------WAGGTCPTGTML------PMPRGAwlgTQLWCHCR--HCGN 338  

                   LFpeeadqsssaakekssggagksrkagrrepskgtisskkrppTvGsqF
                   L  ++ + ++                                        
     sh00381   339 LLCPGGGEAGL--------------------------------------- 349  

                   ksLneLmetLnstnPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvLEni
                            L++  PH                                  
     sh00381   350 --------SLHTDPPH---------------------------------- 357  

                   RIRraGFPyRlpfdeFlqRYkvLlpktwppwggewknrlfgdakkaceal
                                  F+      +p   +p  ++w+             l
     sh00381   358 --------------TFCALTS-ACPHSSAPQTRPWS-------------L 379  

                   LqslglgiegdnldeeeyqiGkTKvFlRnpgqlaeLEelRee<-*
                    +++g                          +++   ++      
     sh00381   380 AETSG------------------------SSTMQGTSRKGPL    397  

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