hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/shimazu/full/sh/sh00381/interpro/cnk_1/seq.in
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Query:  sh00381  448

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Myosin_head Myosin head (motor domain)                 -148.3    4.5e-10   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Myosin_head   1/1       1   393 [.     1   795 []  -148.3  4.5e-10

Alignments of top-scoring domains:
Myosin_head: domain 1 of 1, from 1 to 393: score -148.3, E = 4.5e-10
                   *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrlp
                                                                     
     sh00381     -    ----------------------------------------------- -    

                   iYteeiiakYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA
                                                                     
     sh00381     - -------------------------------------------------- -    

                   GKTEntKkvmqYlAsvsgstpkvssaevtpnkeegsledqiLqsNPiLEA
                                                                     
     sh00381     - -------------------------------------------------- -    

                   FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy
                                                                     
     sh00381     - -------------------------------------------------- -    

                   QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc
                                LL g  +++ + eL+L++  +p  Y+++ q++  n +
     sh00381     1 -------------LLRGSEDKQ-LHELHLER--NPAVYNFTHQGAGLNMT 34   

                   ytvyrrDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNie
                   +          D +  + + +A+++iGf+ ee +s+ rilAAILhLGNie
     sh00381    35 VHS----ALDSDEQSHQAVTEAMRVIGFSPEEVESVHRILAAILHLGNIE 80   

                   GFkqdqat.TGkeeqAGvtvsedteealeiiaeLLGvDaeeLekaLlsrr
                    F+++ + +  ke+ A    + +++  +  +aeL  +     +++Ll r+
     sh00381    81 -FVETEEGgLQKEGLA----VAEEAL-VDHVAELTATPRDLVLRSLLART 124  

                   i.ktGgggkrretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaL
                   + + G     re + k+ +  +A+yaRDA AKa Y RLF W+V++iN ++
     sh00381   125 VaSGG-----RELIEKGHTAAEASYARDACAKAVYQRLFEWVVNRINSVM 169  

                   sakeQasdSrGGqaaegdDTVSITVVdlPraaldkranfIGvLDIyGFEI
                   +      +                     ++  d +  +IGvLDIyGFE+
     sh00381   170 EPRG---R---------------------DPRRDGKDTVIGVLDIYGFEV 195  

                   FaekNSFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglD
                   F  +NSFEQ+cINY+NEKLQQ+F+++++k EQEEY+rEgI+W  ++y ++
     sh00381   196 F-PVNSFEQFCINYCNEKLQQLFIQLILKQEQEEYEREGITWQSVEY-FN 243  

                   nqacidLIEkKmkPpGIlslLDEeCrfPka.tDqtFldKLlqtfsskhpr
                   n +++dL+E   +  GIl+ LDE+C      tD  Fl+ L  ++  +h+ 
     sh00381   244 NATIVDLVER--PHRGILAVLDEACSSAGTiTDRIFLQTLDMHH-RHHL- 289  

                   lthFaqkpgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfdd
                     h+  +  r+                                   +++ 
     sh00381   290 --HY-TS--RQ-----------------------------------VPPA 299  

                   lisllksSsdvpllaeLFpeeelseaAnrrnkapdfeadfdeeeaaaksa
                   ++           ++ ++   ++                           
     sh00381   300 VP-----------VPPQWAGGTC--------------------------- 311  

                   klgsgkgksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKP
                         +  +++  ++++++ ++    + L    + +             
     sh00381   312 ------PTGTML--PMPRGAWLG----TQLWCHCRHC------------G 337  

                   NekKkagqFDnslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrl
                   N    +g  ++ l lh        + +        P+  tf    +    
     sh00381   338 NLL-CPGGGEAGLSLHT-------D-P--------PH--TFCALTS---- 364  

                   LapktwppgfrpkwvgdakkgceliLqslrqtpgnldkeeyrfGkTKiFf
                    +p++ +p +   w+ ++++g+ ++ +                       
     sh00381   365 ACPHSSAPQT-RPWSLAETSGSSTMQGTS--------------------- 392  

                   R<-*
                   R   
     sh00381   393 R    393  

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