hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/shimazu/full/sg/sg00016/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  sg00016  1129

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PI-PLC-X Phosphatidylinositol-specific phospholipase    250.2    2.9e-71   1
PI-PLC-Y Phosphatidylinositol-specific phospholipase    170.6    2.7e-47   1
C2       C2 domain                                       96.1    7.2e-25   1
efhand   EF hand                                         33.5    4.7e-06   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
efhand     1/2      91   119 ..     1    29 []    27.6  0.00029
efhand     2/2     127   156 ..     1    29 []     6.4       19
PI-PLC-X   1/1     245   390 ..     1   153 []   250.2  2.9e-71
PI-PLC-Y   1/1     543   658 ..     1   128 []   170.6  2.7e-47
C2         1/1     678   770 ..     1    88 []    96.1  7.2e-25

Alignments of top-scoring domains:
efhand: domain 1 of 2, from 91 to 119: score 27.6, E = 0.00029
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                       lk+ F+e+Dk+gDG +s+ E +++l+kl   
     sg00016    91    WLKQTFDEADKNGDGSLSIGEVLQLLHKL    119  

efhand: domain 2 of 2, from 127 to 156: score 6.4, E = 19
                   *->elkeaFkefDk.DgDGkIsfeEfkaalkkl<-*
                      ++k++F+e+D++D+ G++ feEf+a+ k++   
     sg00016   127    RVKQMFREADTdDHQGTLGFEEFCAFYKMM    156  

PI-PLC-X: domain 1 of 1, from 245 to 390: score 250.2, E = 2.9e-71
                   *->dmsiPLsHYfisSshntYLtgkQlwGkssvesYrqqLdaGcRcvELD
                      dm +PLsHYfi+SshntYL g+Ql ++s v +Y  +L+aGcRcvE D
     sg00016   245    DMTQPLSHYFITSSHNTYLVGDQLMSQSRVDMYAWVLQAGCRCVEVD 291  

                   cwdGkpddepiIyHGhtltleiklkdVleaIkdfafkPtSpyPvIlSlen
                   cwdG pd+epi+ HG+tlt++i++kdV+e+I ++af    +yPvIlS+en
     sg00016   292 CWDG-PDGEPIVHHGYTLTSKILFKDVIETINKYAFI-KNEYPVILSIEN 339  

                   HcnsddqQrkmakyfkeiFgdmLltkPtldslttepglpLPslkdlrgKI
                   Hc++  qQ+kma+y+ +i+gd+L    +  + +t+    LPs+ +l+gKI
     sg00016   340 HCSVI-QQKKMAQYLTDILGDKLDLSSVSSEDATT----LPSPQMLKGKI 384  

                   LLknkk<-*
                   L+k+kk   
     sg00016   385 LVKGKK    390  

PI-PLC-Y: domain 1 of 1, from 543 to 658: score 170.6, E = 2.7e-47
                   *->ElsnLvnYiqsikFrsFelsGeekntsyeisSFsErkvkakkllkes
                       ls+Lv Y +s+     ++   e   s ++sSFsE+  ka + l++ 
     sg00016   543    ALSDLVKYTKSV--ATHDIE-MEAASSWQVSSFSET--KAHQILQQK 584  

                   pvefVkyNkrqLsRvYPkGtRvDSSNfmPqvfWnaGCQmVALNfQTsDlp
                   p +  ++N+ qLsR+YP   RvDSSN++Pq+fWnaGCQmVALN+Q+ +  
     sg00016   585 PAQYLRFNQQQLSRIYPSSYRVDSSNYNPQPFWNAGCQMVALNYQSEGRM 634  

                   mqiNdGmFeyNggqPdGsfksGYlLKPeflR<-*
                   +q+N ++F++Ngg       +GY+LKP ++    
     sg00016   635 LQLNRAKFSANGG-------CGYVLKPGCMC    658  

C2: domain 1 of 1, from 678 to 770: score 96.1, E = 7.2e-25
                   *->LrVtvieAknLppkDf.....kngksDPYVkvslggdkkd.qkkkTk
                      L++++i++++Lp+  ++  ++++  +DP+V+v++ g ++d ++ +T+
     sg00016   678    LVLRIISGQQLPKPRDsmlgdRGEIIDPFVEVEIIGLPVDcSREQTR 724  

                   vikkt.lNPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-
                   v+++++ NP+W+Et++F v+ p+ +  +++ V+D+d +g  df+G+ +  
     sg00016   725 VVDDNgFNPTWEETLVFMVHMPEIAL-VRFLVWDHDPIG-RDFIGQRT   770  

                   *
                    
     sg00016     -   -    

//