hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/shimazu/full/sf/sf00012/interpro/cnk_1/seq.in
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Query:  sf00012  2651

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CH       Calponin homology domain                       197.6    1.1e-54   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CH         1/2      57   159 ..     1   100 []   106.0  4.2e-27
CH         2/2     180   276 ..     1   100 []    91.4    1e-22

Alignments of top-scoring domains:
CH: domain 1 of 2, from 57 to 159: score 106.0, E = 4.2e-27
                   *->eeeallrWinsll.....kvtnfssdlkDGvvLckLlnslsPagsvd
                      + ++++rW+n++l+  ++++ n+++dl+DG+ L++Ll++ls  +++ 
     sf00012    57    QQNTFTRWCNEHLkcvskRIANLQTDLSDGLRLIALLEVLSQ-KKMH 102  

                   kkk......rfkkleNinlalsfaeklgafLGvgkvvlfdpeDlvegnen
                    k++++++ r+++leN+  al+f+++++      k+v +d++ +v+g  n
     sf00012   103 RKHnqrptfRQMQLENVSVALEFLDRES-----IKLVSIDSKAIVDG--N 145  

                   kklilgviwtLirl<-*
                    klilg+iwtLi++   
     sf00012   146 LKLILGLIWTLILH    159  

CH: domain 2 of 2, from 180 to 276: score 91.4, E = 1e-22
                   *->eeeallrWinsll...kvtnfssdlkDGvvLckLlnslsPagsvdkk
                      +++ ll Wi+++l++ ++tnfs d+++G++L +L++s++P g+++ +
     sf00012   180    PKQRLLGWIQNKLpqlPITNFSRDWQSGRALGALVDSCAP-GLCPDW 225  

                   k...rfkkleNinlalsfaeklgafLGvgkvvlfdpeDlvegnenkklil
                    + +++k+  N++ a+++a+++     +g+++ ++pe++v++   + ++ 
     sf00012   226 DswdASKPVTNAREAMQQADDW-----LGIPQVITPEEIVDP---NVDEH 267  

                   gviwtLirl<-*
                   +v+++L+++   
     sf00012   268 SVMTYLSQF    276  

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