hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/shimazu/full/sf/sf00005/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  sf00005  2760

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                    72.1    6.9e-17   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/3    2449  2494 ..     1    46 []     5.3       70
WD40       2/3    2497  2536 ..     1    46 []    34.2  1.7e-05
WD40       3/3    2548  2587 ..     1    46 []    35.2  8.7e-06

Alignments of top-scoring domains:
WD40: domain 1 of 3, from 2449 to 2494: score 5.3, E = 70
                   *->t.kllrtlk.......gHtgespVtsvafspdggssdspnllasgs.
                      ++k  r l+++  +++g +g     ++a+ pdg      +ll+sg++
     sf00005  2449    ShKTQRLLSgpwvpgsGVSG----QALAVAPDG------KLLFSGGh 2485 

                   .DgtirlWd<-*
                   +Dg++r+     
     sf00005  2486 wDGSLRVTA    2494 

WD40: domain 2 of 3, from 2497 to 2536: score 34.2, E = 1.7e-05
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +kll+ l++H +   Vt++a +  g       +l+sgs+D t+ +W
     sf00005  2497    RgKLLSQLSCHLD--VVTCLALDTCG------IYLISGSrDTTCMVW 2535 

                   d<-*
                       
     sf00005  2536 R    2536 

WD40: domain 3 of 3, from 2548 to 2587: score 35.2, E = 8.7e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +k++++l gH +  +V++va+s         ++ +sgs+Dgt+ + 
     sf00005  2548    ApKPVQVLYGHGA--AVSCVAISTEL------DMAVSGSeDGTVIIH 2586 

                   d<-*
                       
     sf00005  2587 T    2587 

//