hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/shimazu/full/sf/sf00005/interpro/cnk_1/seq.in
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Query:  sf00005  2760

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Beach    Beige/BEACH domain                             627.8   6.2e-185   1
WD40     WD domain, G-beta repeat                        64.4    2.4e-15   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Beach      1/1    2071  2351 ..     1   287 []   627.8 6.2e-185
WD40       1/2    2499  2536 ..     1    38 []    33.0    7e-06
WD40       2/2    2550  2587 ..     1    38 []    32.4    1e-05

Alignments of top-scoring domains:
Beach: domain 1 of 1, from 2071 to 2351: score 627.8, E = 6.2e-185
                   *->TkRWqrGeISNFeYLmhLNtlAGRsyNDLsQYPVFPWIlADYtSesL
                      T++W+ +eISNFeYLm+LNt+AGR+yNDLsQYPVFPW+l DY+S++L
     sf00005  2071    TQKWVQREISNFEYLMQLNTIAGRTYNDLSQYPVFPWVLQDYVSPTL 2117 

                   DLsnPstFRdLSKPiGAQspeReeqFleRYesledpeekevppFHYGtHY
                   DLsnP++FRdLSKPiG+ +p+ +   +e Yes+edp  + + +FHYGtHY
     sf00005  2118 DLSNPAVFRDLSKPIGVVNPKHAQLVREKYESFEDPA-GTIDKFHYGTHY 2166 

                   SSagiVlfYLiRlePFteefLaLQgGkFDhADRlFhSieetWrsaslenm
                   S+a+ V +YLiR+ePFt+   +LQ G+FD  DR FhS++ +W    le+ 
     sf00005  2167 SNAAGVMHYLIRVEPFTSLHVQLQSGRFDCSDRQFHSVAAAWQA-RLESP 2215 

                   tDVKELIPEFFyLPEfLvNrngfDlGvrQn.GekVnDVdLPPWAkgDEKA
                   +DVKELIPEFFy P fL+N ngfDlG  Q + ekV+DV+LPPWA+     
     sf00005  2216 ADVKELIPEFFYFPDFLENQNGFDLGCLQLtNEKVGDVVLPPWAS----- 2260 

                   dPeeFiqkhReALESdYVSahLHeWIDLIFGYKQrGkeAvkAiNVFhhlt
                   +Pe+Fiq hR+ALES+YVSahLHeWIDLIFGYKQrG++A+ A+NVF++ t
     sf00005  2261 SPEDFIQQHRQALESEYVSAHLHEWIDLIFGYKQRGPAAEEALNVFYYCT 2310 

                   YeGaVDldsieDPverrAieaqIknFGQTPkQLFtkPHPkR<-*
                   YeGaVDld ++D+ er A+e++I nFGQTP QL+++PHP R   
     sf00005  2311 YEGAVDLDHVTDERERKALEGIISNFGQTPCQLLKEPHPTR    2351 

WD40: domain 1 of 2, from 2499 to 2536: score 33.0, E = 7e-06
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++l+ l+ H + Vtc+a +   g +l+sgSrD t+ +W    
     sf00005  2499    KLLSQLsCHLDVVTCLALDTC-GIYLISGSRDTTCMVWR    2536 

WD40: domain 2 of 2, from 2550 to 2587: score 32.4, E = 1e-05
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++++vl+gH ++V+cva+s +   + +sgS+Dgt+ i     
     sf00005  2550    KPVQVLyGHGAAVSCVAISTE-LDMAVSGSEDGTVIIHT    2587 

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