hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna/full/aisin/as00120/interpro/cnk_1/seq.in
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Query:  as00120  1171

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PDZ           PDZ domain (Also known as DHR or GLGF)      9.0       0.35   1
Guanylate_kin Guanylate kinase                          -34.1       0.31   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PDZ             1/1     659   769 ..     1    82 []     9.0     0.35
Guanylate_kin   1/1    1027  1115 ..     1   108 []   -34.1     0.31

Alignments of top-scoring domains:
PDZ: domain 1 of 1, from 659 to 769: score 9.0, E = 0.35
                   *->evtlekevkrgglGfsikggsdk........................
                      + +le++       f++++ s ++ ++++++ ++++ ++++ +++ +
     as00120   659    KFSLERP-------FRPSVTSVGhvrgpgpsvqhttlngdsltsqlt 698  

                   .......givvsevlpGsgaAeagGrLkeGDvIlsvNG........qdve
                     +++ +g +v +v pG + Ae++G L+eG+++l   G  +++++++++ 
     as00120   699 llggnarGSFVHSVKPG-SLAEKAG-LREGHQLLLLEGcirgerqsVPLD 746  

                   nlsheravlalkgsggsevtLtvl<-*
                     + e+a   ++ ++g +vtL  +   
     as00120   747 TCTKEEAHWTIQRCSG-PVTLHYK    769  

Guanylate_kin: domain 1 of 1, from 1027 to 1115: score -34.1, E = 0.31
                   *->TRpVpRpgEvdGkdYhFVssrEemekdIaaneFlEygefqg.nyYGT
                      TR+            +F+  r + e  I   e        ++n +  
     as00120  1027    TRD------------EFLR-RQKTETIIYSRE-------KNpNAFEC 1053 

                   slet.vrqvakqgKiciLDvepQgvkrlrtaelsNPivvFIaPpSlqele
                   + ++++++va+++K+c+L+  +   + l +   + Piv+FI+    +  +
     as00120  1054 IAPAnIEAVAAKNKHCLLEAGIGCTRDLIKSNIY-PIVLFIRVCE-KNIK 1101 

                   krLegr.nkesEes<-*
                   + ++ ++++e+Ee+   
     as00120  1102 RFRKLLpRPETEEE    1115 

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