hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna/full/aisin/as00119/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: as00119 1455 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Filamin Filamin/ABP280 repeat 1708.5 0 15 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Filamin 1/15 1 62 [. 1 101 [] 54.4 2.5e-12 Filamin 2/15 68 162 .. 1 101 [] 151.7 1.3e-41 Filamin 3/15 168 255 .. 1 101 [] 173.8 2.8e-48 Filamin 4/15 261 352 .. 1 101 [] 176.0 6.1e-49 Filamin 5/15 358 449 .. 1 101 [] 173.4 3.6e-48 Filamin 6/15 455 545 .. 1 101 [] 92.0 1.2e-23 Filamin 7/15 578 665 .. 1 101 [] 4.6 0.00056 Filamin 8/15 670 757 .. 1 101 [] 176.6 4e-49 Filamin 9/15 769 844 .. 1 101 [] 8.1 0.00028 Filamin 10/15 852 939 .. 1 101 [] 171.1 1.9e-47 Filamin 11/15 965 1035 .. 1 101 [] 11.5 0.00014 Filamin 12/15 1043 1130 .. 1 101 [] 167.2 2.8e-46 Filamin 13/15 1137 1225 .. 1 101 [] 128.7 1.1e-34 Filamin 14/15 1234 1321 .. 1 101 [] 143.0 5.2e-39 Filamin 15/15 1362 1451 .. 1 101 [] 147.8 2e-40 Alignments of top-scoring domains: Filamin: domain 1 of 15, from 1 to 62: score 54.4, E = 2.5e-12 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs + ++AG+++L+ as00119 1 ------------------------------C-------SSAGSAELT 10 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg + +++ +G+ + ev+++D+gDGt+t++Y+P +pG Ytv+++ygG+++P+ as00119 11 IEICSEAGL--PAEVYIQDHGDGTHTITYIPLCPGAYTVTIKYGGQPVPN 58 SPFk<-* +P k as00119 59 FPSK 62 Filamin: domain 2 of 15, from 68 to 162: score 151.7, E = 1.3e-41 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs a+D s V++yGPG+eg+GV+ +++eF+Vd+ +++ + Gg +++ as00119 68 AVDTSGVQCYGPGIEGQGVFREATTEFSVDA----RALTQTGGPHVK 110 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg + V +PsG+ ++e++v+D+gDG+Y V+YtP+e+G ++v+Vty+G ++P as00119 111 ARVANPSGN--LTETYVQDRGDGMYKVEYTPYEEGLHSVDVTYDGSPVPS 158 SPFk<-* SPF+ as00119 159 SPFQ 162 Filamin: domain 3 of 15, from 168 to 255: score 173.8, E = 2.8e-48 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs ++D+s+V+++GPG++ g +++kP +FtV+t +gAG+GgL+ as00119 168 GCDPSRVRVHGPGIQSG--TTNKPNKFTVET-------RGAGTGGLG 205 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg ++VeGPs+a +++++Dn+DG+++V+Y+P+e+G+Y+ nVtygG+++Pg as00119 206 LAVEGPSEA----KMSCMDNKDGSCSVEYIPYEAGTYSLNVTYGGHQVPG 251 SPFk<-* SPFk as00119 252 SPFK 255 Filamin: domain 4 of 15, from 261 to 352: score 176.0, E = 6.1e-49 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs +DasKVk++GPGL++g+V+++ P++F+Vdt ++AG+++L+ as00119 261 VTDASKVKCSGPGLSPGMVRANLPQSFQVDT-------SKAGVAPLQ 300 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg VkV+GP+G+ v++v+v+Dn DGt tV Y+P +G+Y+++V+yg+e++P+ as00119 301 VKVQGPKGL--VEPVDVVDNADGTQTVNYVPSREGPYSISVLYGDEEVPR 348 SPFk<-* SPFk as00119 349 SPFK 352 Filamin: domain 5 of 15, from 358 to 449: score 173.4, E = 3.6e-48 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs ++DasKVkA+GPGL +GV + P eFt+d+ k+AG+G L+ as00119 358 THDASKVKASGPGLNTTGVPASLPVEFTIDA-------KDAGEGLLA 397 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg V++ +P+G +++++++Dn+DGtYtV+Y+P ++G Yt+ ++ygG++IP as00119 398 VQITDPEGK--PKKTHIQDNHDGTYTVAYVPDVTGRYTILIKYGGDEIPF 445 SPFk<-* SP++ as00119 446 SPYR 449 Filamin: domain 6 of 15, from 455 to 545: score 92.0, E = 1.2e-23 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs +gDasK+++ G G+ ++ + g+ + tVdt k+AG+G+++ as00119 455 TGDASKCTVTGAGIGPT-IQIGEETVITVDT-------KAAGKGKVT 493 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg +V+ P+G +v+v+v++n DGt+++ Yt+ +pG Y + V +gGeh+P+ as00119 494 CTVCTPDGS--EVDVDVVENEDGTFDIFYTAPQPGKYVICVRFGGEHVPN 541 SPFk<-* SPF+ as00119 542 SPFQ 545 Filamin: domain 7 of 15, from 578 to 665: score 4.6, E = 0.00056 *->agDasKVkAyGPGLeggGVkvg.kPaeFtVdtVdkdGepkgAGgGgL + +++ + GL + ++ ++ Ft++ G+ as00119 578 TWAPERPLVGVNGLDVTSLRPFdLVIPFTIKK------------GEI 612 sVkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIP + V PsG v ++ +tDn+DGt tV+Y P e+G ++ ++ y+ hIP as00119 613 TGEVRMPSGK--VAQPTITDNKDGTVTVRYAPSEAGLHEMDIRYDNMHIP 660 gSPFk<-* gSP + as00119 661 GSPLQ 665 Filamin: domain 8 of 15, from 670 to 757: score 176.6, E = 4e-49 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs +++ +V+AyGPGL +g +v+kPa FtV+t k+AG+GgLs as00119 670 YVNCGHVTAYGPGLTHG--VVNKPATFTVNT-------KDAGEGGLS 707 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg +++eGPs+a e+++tDn+DGt++VsY+P pGdY++ V+y+++h+Pg as00119 708 LAIEGPSKA----EISCTDNQDGTCSVSYLPVLPGDYSILVKYNEQHVPG 753 SPFk<-* SPF+ as00119 754 SPFT 757 Filamin: domain 9 of 15, from 769 to 844: score 8.1, E = 0.00028 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs ++ kvg a+ ++ ++ L+ as00119 769 --------------SHL--KVGSAADIPINI-------SETDLSLLT 792 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg ++V+ PsG ++++ ++ +G ++s++P+e+G++ v+V+ +G+h++ as00119 793 ATVVPPSGR--EEPCLLKRLRNGHVGISFVPKETGEHLVHVKKNGQHVAS 840 SPFk<-* SP+ as00119 841 SPIP 844 Filamin: domain 10 of 15, from 852 to 939: score 171.1, E = 1.9e-47 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs gDas+V+++G GL+ g ++++PaeF +dt ++AG GgLs as00119 852 IGDASRVRVSGQGLHEG--HTFEPAEFIIDT-------RDAGYGGLS 889 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg +++eGPs++ ++ +D DGt++V+Y+PtepG+Y++n++++++h+Pg as00119 890 LSIEGPSKV----DINTEDLEDGTCRVTYCPTEPGNYIINIKFADQHVPG 935 SPFk<-* SPF+ as00119 936 SPFS 939 Filamin: domain 11 of 15, from 965 to 1035: score 11.5, E = 0.00014 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs ++++ + L + + + as00119 965 GSHCDLS------LKIP----------EISI------------QDMT 983 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg ++V +PsG + e+++++ + tY ++++P e G++tv+V+y G+h+Pg as00119 984 AQVTSPSGK--THEAEIVEGENHTYCIRFVPAEMGTHTVSVKYKGQHVPG 1031 SPFk<-* SPF+ as00119 1032 SPFQ 1035 Filamin: domain 12 of 15, from 1043 to 1130: score 167.2, E = 2.8e-46 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs +g+a+KV+A GPGLe++ ++g+PaeF+++t ++AG+GgL+ as00119 1043 EGGAHKVRAGGPGLERA--EAGVPAEFSIWT-------REAGAGGLA 1080 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg ++VeGPs+a e++ +D++DG+++V+Y+ +epGdY+v+V++++ehIP+ as00119 1081 IAVEGPSKA----EISFEDRKDGSCGVAYVVQEPGDYEVSVKFNEEHIPD 1126 SPFk<-* SPF as00119 1127 SPFV 1130 Filamin: domain 13 of 15, from 1137 to 1225: score 128.7, E = 1.1e-34 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs +gDa + +++ ++++g kv++Pa+F V ++ +G+ + as00119 1137 SGDARRLTVSSLQESGL--KVNQPASFAVSL--------NGAKGAID 1173 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg +kV++PsGa ++e++vt+ +++ Y V+++P+e+G+Y ++V+++G+hIPg as00119 1174 AKVHSPSGA--LEECYVTEIDQDKYAVRFIPRENGVYLIDVKFNGTHIPG 1221 SPFk<-* SPFk as00119 1222 SPFK 1225 Filamin: domain 14 of 15, from 1234 to 1321: score 143.0, E = 5.2e-39 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs +gD+ V AyG GLegg ++g PaeF+V+t ++AG+G+Ls as00119 1234 GGDPGLVSAYGAGLEGG--VTGNPAEFVVNT-------SNAGAGALS 1271 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGe.hIP V++ GPs++ +++++++ G Y+V+YtP+ pG+Y ++++ygG hI+ as00119 1272 VTIDGPSKV----KMDCQECPEG-YRVTYTPMAPGSYLISIKYGGPyHIG 1316 gSPFk<-* gSPFk as00119 1317 GSPFK 1321 Filamin: domain 15 of 15, from 1362 to 1451: score 147.8, E = 2e-40 *->agDasKVkAyGPGLeggGVkvgkPaeFtVdtVdkdGepkgAGgGgLs ++DasKV A G+GL+++ +vg+ ++FtVd+ ++AG+++L as00119 1362 PADASKVVAKGLGLSKA--YVGQKSSFTVDC-------SKAGNNMLL 1399 VkVeGPsGaeAvvevkvtDngDGtYtVsYtPtepGdYtvnVtygGehIPg V+V+GP + ++e+ v++ g + Y+VsY+ + G+Yt +V++g+ehIPg as00119 1400 VGVHGPRTP--CEEILVKHVGSRLYSVSYLLKDKGEYTLVVKWGDEHIPG 1447 SPFk<-* SP++ as00119 1448 SPYR 1451 //