# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/as00116.fasta.nr -Q ../query/FLJ00116.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00116, 169 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826904 sequences Expectation_n fit: rho(ln(x))= 4.6768+/-0.000186; mu= 10.7329+/- 0.010 mean_var=75.5834+/-14.474, 0's: 45 Z-trim: 45 B-trim: 10 in 1/64 Lambda= 0.147523 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|10440532|dbj|BAB15796.1| FLJ00116 protein [Homo ( 169) 1172 257.7 6e-67 gi|119602335|gb|EAW81929.1| hCG2029376, isoform CR ( 248) 1172 257.9 7.8e-67 gi|119602334|gb|EAW81928.1| hCG2029376, isoform CR ( 300) 1172 257.9 8.9e-67 gi|199560536|ref|NP_001128349.1| hypothetical prot ( 352) 1172 258.0 1e-66 gi|28071102|emb|CAD61932.1| unnamed protein produc ( 354) 1172 258.0 1e-66 gi|199560438|ref|NP_001128348.1| hypothetical prot ( 393) 1172 258.1 1.1e-66 gi|28193218|emb|CAD62351.1| unnamed protein produc ( 411) 1172 258.1 1.1e-66 gi|28207915|emb|CAD62611.1| unnamed protein produc ( 421) 1172 258.1 1.1e-66 gi|199560355|ref|NP_001128347.1| hypothetical prot ( 426) 1172 258.1 1.1e-66 gi|119602331|gb|EAW81925.1| hCG2029376, isoform CR ( 476) 1172 258.1 1.2e-66 gi|187470846|sp|Q86SX3.2|CN080_HUMAN RecName: Full ( 495) 1172 258.2 1.3e-66 gi|28193242|emb|CAD62363.1| unnamed protein produc ( 511) 1172 258.2 1.3e-66 gi|114655119|ref|XP_001141937.1| PREDICTED: simila ( 248) 1157 254.7 7.2e-66 gi|114655113|ref|XP_001142025.1| PREDICTED: hypoth ( 300) 1157 254.7 8.2e-66 gi|114655111|ref|XP_001142182.1| PREDICTED: hypoth ( 374) 1157 254.8 9.5e-66 gi|114655105|ref|XP_001142350.1| PREDICTED: hypoth ( 385) 1157 254.9 9.7e-66 gi|114655109|ref|XP_001142431.1| PREDICTED: hypoth ( 393) 1157 254.9 9.8e-66 gi|114655107|ref|XP_510214.2| PREDICTED: hypotheti ( 426) 1157 254.9 1e-65 gi|109085070|ref|XP_001086902.1| PREDICTED: hypoth ( 248) 1018 225.1 5.8e-57 gi|109085068|ref|XP_001087133.1| PREDICTED: hypoth ( 391) 1018 225.3 7.9e-57 gi|109085066|ref|XP_001087250.1| PREDICTED: hypoth ( 424) 1018 225.3 8.3e-57 gi|109085064|ref|XP_001087007.1| PREDICTED: hypoth ( 490) 1018 225.4 9.2e-57 gi|194225429|ref|XP_001917478.1| PREDICTED: simila ( 339) 782 175.0 9.4e-42 gi|26325588|dbj|BAC26548.1| unnamed protein produc ( 170) 713 160.0 1.5e-37 gi|74188956|dbj|BAE39248.1| unnamed protein produc ( 411) 713 160.4 2.8e-37 gi|167466268|ref|NP_598802.2| hypothetical protein ( 420) 713 160.4 2.9e-37 gi|18490566|gb|AAH22617.1| 4930427A07Rik protein [ ( 283) 704 158.3 8.3e-37 gi|60360020|dbj|BAD90229.1| mFLJ00116 protein [Mus ( 289) 704 158.3 8.4e-37 gi|148686609|gb|EDL18556.1| RIKEN cDNA 4930427A07 ( 420) 704 158.5 1.1e-36 gi|123784723|sp|Q3UK37.1|CN080_MOUSE RecName: Full ( 420) 692 155.9 6.4e-36 gi|109478695|ref|XP_001072906.1| PREDICTED: hypoth ( 255) 675 152.1 5.6e-35 gi|149044006|gb|EDL97388.1| rCG27644 [Rattus norve ( 420) 675 152.3 7.8e-35 gi|73964569|ref|XP_855533.1| PREDICTED: hypothetic ( 249) 663 149.5 3.2e-34 gi|126290067|ref|XP_001368803.1| PREDICTED: simila ( 126) 221 55.1 4.2e-06 >>gi|10440532|dbj|BAB15796.1| FLJ00116 protein [Homo sap (169 aa) initn: 1172 init1: 1172 opt: 1172 Z-score: 1358.1 bits: 257.7 E(): 6e-67 Smith-Waterman score: 1172; 100.000% identity (100.000% similar) in 169 aa overlap (1-169:1-169) 10 20 30 40 50 60 FLJ001 DTVLGTCAPEVPAAASQPTFLPWVPERGGGELDLVVRELQALEEELREAAERRRAAWEAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 DTVLGTCAPEVPAAASQPTFLPWVPERGGGELDLVVRELQALEEELREAAERRRAAWEAK 10 20 30 40 50 60 70 80 90 100 110 120 FLJ001 AGGCGRGPEWSAARRASREAVEKELGALQQCWERDGGPAQPHGPHRLVRREDGAAGDRDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 AGGCGRGPEWSAARRASREAVEKELGALQQCWERDGGPAQPHGPHRLVRREDGAAGDRDL 70 80 90 100 110 120 130 140 150 160 FLJ001 RAAVVIRTLRSQEACLEAVLRRLQGQCRQELARLVGARPGLIWIPPPGR ::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 RAAVVIRTLRSQEACLEAVLRRLQGQCRQELARLVGARPGLIWIPPPGR 130 140 150 160 >>gi|119602335|gb|EAW81929.1| hCG2029376, isoform CRA_e (248 aa) initn: 1172 init1: 1172 opt: 1172 Z-score: 1356.1 bits: 257.9 E(): 7.8e-67 Smith-Waterman score: 1172; 100.000% identity (100.000% similar) in 169 aa overlap (1-169:80-248) 10 20 30 FLJ001 DTVLGTCAPEVPAAASQPTFLPWVPERGGG :::::::::::::::::::::::::::::: gi|119 QLLRTLERENQRLEAVLAWRRSELVFWRWMDTVLGTCAPEVPAAASQPTFLPWVPERGGG 50 60 70 80 90 100 40 50 60 70 80 90 FLJ001 ELDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ELDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQ 110 120 130 140 150 160 100 110 120 130 140 150 FLJ001 CWERDGGPAQPHGPHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 CWERDGGPAQPHGPHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQE 170 180 190 200 210 220 160 FLJ001 LARLVGARPGLIWIPPPGR ::::::::::::::::::: gi|119 LARLVGARPGLIWIPPPGR 230 240 >>gi|119602334|gb|EAW81928.1| hCG2029376, isoform CRA_d (300 aa) initn: 1172 init1: 1172 opt: 1172 Z-score: 1355.0 bits: 257.9 E(): 8.9e-67 Smith-Waterman score: 1172; 100.000% identity (100.000% similar) in 169 aa overlap (1-169:132-300) 10 20 30 FLJ001 DTVLGTCAPEVPAAASQPTFLPWVPERGGG :::::::::::::::::::::::::::::: gi|119 QLLRTLERENQRLEAVLAWRRSELVFWRWMDTVLGTCAPEVPAAASQPTFLPWVPERGGG 110 120 130 140 150 160 40 50 60 70 80 90 FLJ001 ELDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ELDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQ 170 180 190 200 210 220 100 110 120 130 140 150 FLJ001 CWERDGGPAQPHGPHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 CWERDGGPAQPHGPHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQE 230 240 250 260 270 280 160 FLJ001 LARLVGARPGLIWIPPPGR ::::::::::::::::::: gi|119 LARLVGARPGLIWIPPPGR 290 300 >>gi|199560536|ref|NP_001128349.1| hypothetical protein (352 aa) initn: 1172 init1: 1172 opt: 1172 Z-score: 1354.2 bits: 258.0 E(): 1e-66 Smith-Waterman score: 1172; 100.000% identity (100.000% similar) in 169 aa overlap (1-169:184-352) 10 20 30 FLJ001 DTVLGTCAPEVPAAASQPTFLPWVPERGGG :::::::::::::::::::::::::::::: gi|199 KLLRTLERENQRLEAVLAWRRSELVFWRWMDTVLGTCAPEVPAAASQPTFLPWVPERGGG 160 170 180 190 200 210 40 50 60 70 80 90 FLJ001 ELDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|199 ELDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQ 220 230 240 250 260 270 100 110 120 130 140 150 FLJ001 CWERDGGPAQPHGPHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|199 CWERDGGPAQPHGPHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQE 280 290 300 310 320 330 160 FLJ001 LARLVGARPGLIWIPPPGR ::::::::::::::::::: gi|199 LARLVGARPGLIWIPPPGR 340 350 >>gi|28071102|emb|CAD61932.1| unnamed protein product [H (354 aa) initn: 1172 init1: 1172 opt: 1172 Z-score: 1354.2 bits: 258.0 E(): 1e-66 Smith-Waterman score: 1172; 100.000% identity (100.000% similar) in 169 aa overlap (1-169:186-354) 10 20 30 FLJ001 DTVLGTCAPEVPAAASQPTFLPWVPERGGG :::::::::::::::::::::::::::::: gi|280 KLLRTLERENQRLEAVLAWRRSELVFWRWMDTVLGTCAPEVPAAASQPTFLPWVPERGGG 160 170 180 190 200 210 40 50 60 70 80 90 FLJ001 ELDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|280 ELDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQ 220 230 240 250 260 270 100 110 120 130 140 150 FLJ001 CWERDGGPAQPHGPHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|280 CWERDGGPAQPHGPHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQE 280 290 300 310 320 330 160 FLJ001 LARLVGARPGLIWIPPPGR ::::::::::::::::::: gi|280 LARLVGARPGLIWIPPPGR 340 350 >>gi|199560438|ref|NP_001128348.1| hypothetical protein (393 aa) initn: 1172 init1: 1172 opt: 1172 Z-score: 1353.6 bits: 258.1 E(): 1.1e-66 Smith-Waterman score: 1172; 100.000% identity (100.000% similar) in 169 aa overlap (1-169:225-393) 10 20 30 FLJ001 DTVLGTCAPEVPAAASQPTFLPWVPERGGG :::::::::::::::::::::::::::::: gi|199 KLLRTLERENQRLEAVLAWRRSELVFWRWMDTVLGTCAPEVPAAASQPTFLPWVPERGGG 200 210 220 230 240 250 40 50 60 70 80 90 FLJ001 ELDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|199 ELDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQ 260 270 280 290 300 310 100 110 120 130 140 150 FLJ001 CWERDGGPAQPHGPHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|199 CWERDGGPAQPHGPHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQE 320 330 340 350 360 370 160 FLJ001 LARLVGARPGLIWIPPPGR ::::::::::::::::::: gi|199 LARLVGARPGLIWIPPPGR 380 390 >>gi|28193218|emb|CAD62351.1| unnamed protein product [H (411 aa) initn: 1172 init1: 1172 opt: 1172 Z-score: 1353.4 bits: 258.1 E(): 1.1e-66 Smith-Waterman score: 1172; 100.000% identity (100.000% similar) in 169 aa overlap (1-169:243-411) 10 20 30 FLJ001 DTVLGTCAPEVPAAASQPTFLPWVPERGGG :::::::::::::::::::::::::::::: gi|281 KLLRTLERENQRLEAVLAWRRSELVFWRWMDTVLGTCAPEVPAAASQPTFLPWVPERGGG 220 230 240 250 260 270 40 50 60 70 80 90 FLJ001 ELDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|281 ELDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQ 280 290 300 310 320 330 100 110 120 130 140 150 FLJ001 CWERDGGPAQPHGPHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|281 CWERDGGPAQPHGPHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQE 340 350 360 370 380 390 160 FLJ001 LARLVGARPGLIWIPPPGR ::::::::::::::::::: gi|281 LARLVGARPGLIWIPPPGR 400 410 >>gi|28207915|emb|CAD62611.1| unnamed protein product [H (421 aa) initn: 1172 init1: 1172 opt: 1172 Z-score: 1353.2 bits: 258.1 E(): 1.1e-66 Smith-Waterman score: 1172; 100.000% identity (100.000% similar) in 169 aa overlap (1-169:253-421) 10 20 30 FLJ001 DTVLGTCAPEVPAAASQPTFLPWVPERGGG :::::::::::::::::::::::::::::: gi|282 KLLRTLERENQRLEAVLAWRRSELVFWRWMDTVLGTCAPEVPAAASQPTFLPWVPERGGG 230 240 250 260 270 280 40 50 60 70 80 90 FLJ001 ELDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|282 ELDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQ 290 300 310 320 330 340 100 110 120 130 140 150 FLJ001 CWERDGGPAQPHGPHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|282 CWERDGGPAQPHGPHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQE 350 360 370 380 390 400 160 FLJ001 LARLVGARPGLIWIPPPGR ::::::::::::::::::: gi|282 LARLVGARPGLIWIPPPGR 410 420 >>gi|199560355|ref|NP_001128347.1| hypothetical protein (426 aa) initn: 1172 init1: 1172 opt: 1172 Z-score: 1353.2 bits: 258.1 E(): 1.1e-66 Smith-Waterman score: 1172; 100.000% identity (100.000% similar) in 169 aa overlap (1-169:258-426) 10 20 30 FLJ001 DTVLGTCAPEVPAAASQPTFLPWVPERGGG :::::::::::::::::::::::::::::: gi|199 QLLRTLERENQRLEAVLAWRRSELVFWRWMDTVLGTCAPEVPAAASQPTFLPWVPERGGG 230 240 250 260 270 280 40 50 60 70 80 90 FLJ001 ELDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|199 ELDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQ 290 300 310 320 330 340 100 110 120 130 140 150 FLJ001 CWERDGGPAQPHGPHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|199 CWERDGGPAQPHGPHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQE 350 360 370 380 390 400 160 FLJ001 LARLVGARPGLIWIPPPGR ::::::::::::::::::: gi|199 LARLVGARPGLIWIPPPGR 410 420 >>gi|119602331|gb|EAW81925.1| hCG2029376, isoform CRA_a (476 aa) initn: 1172 init1: 1172 opt: 1172 Z-score: 1352.6 bits: 258.1 E(): 1.2e-66 Smith-Waterman score: 1172; 100.000% identity (100.000% similar) in 169 aa overlap (1-169:308-476) 10 20 30 FLJ001 DTVLGTCAPEVPAAASQPTFLPWVPERGGG :::::::::::::::::::::::::::::: gi|119 QLLRTLERENQRLEAVLAWRRSELVFWRWMDTVLGTCAPEVPAAASQPTFLPWVPERGGG 280 290 300 310 320 330 40 50 60 70 80 90 FLJ001 ELDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ELDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQ 340 350 360 370 380 390 100 110 120 130 140 150 FLJ001 CWERDGGPAQPHGPHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 CWERDGGPAQPHGPHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQE 400 410 420 430 440 450 160 FLJ001 LARLVGARPGLIWIPPPGR ::::::::::::::::::: gi|119 LARLVGARPGLIWIPPPGR 460 470 169 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Sat Feb 28 00:34:18 2009 done: Sat Feb 28 00:38:41 2009 Total Scan time: 627.540 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]