hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna/full/aisin/as00111/interpro/cnk_1/seq.in
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Query:  as00111  334

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Beach    Beige/BEACH domain                             426.1   3.3e-124   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Beach      1/1       1   235 [.     1   287 []   426.1 3.3e-124

Alignments of top-scoring domains:
Beach: domain 1 of 1, from 1 to 235: score 426.1, E = 3.3e-124
                   *->TkRWqrGeISNFeYLmhLNtlAGRsyNDLsQYPVFPWIlADYtSesL
                                                                     
     as00111     -    ----------------------------------------------- -    

                   DLsnPstFRdLSKPiGAQspeReeqFleRYesledpeekevppFHYGtHY
                    L nP++FRdLSKP+GAQ++eR+ +F+ R+++ e  e   + + HY tHY
     as00111     1 -LANPKIFRDLSKPMGAQTKERKLKFIQRFKEVEKTEGDMTVQCHYYTHY 49   

                   SSagiVlfYLiRlePFteefLaLQgGkFDhADRlFhSieetWrsaslenm
                   SSa iV +YL+R++PFt+ f aLQgG+FD ADR+FhS+++tW sas+enm
     as00111    50 SSAIIVASYLVRMPPFTQAFCALQGGSFDVADRMFHSVKSTWESASRENM 99   

                   tDVKELIPEFFyLPEfLvNrngfDlGvrQnGekVnDVdLPPWAkgDEKAd
                   +DV+EL+PEFFyLPEfL+N ng  +G +Q+G++++DV LPPWA g    d
     as00111   100 SDVRELTPEFFYLPEFLTNCNGVEFGCMQDGTVLGDVQLPPWADG----D 145  

                   PeeFiqkhReALESdYVSahLHeWIDLIFGYKQrGkeAvkAiNVFhhltY
                   P+ Fi +hR ALESd+VSa+LH+WIDLIFGYKQ+G++Av+A+N+Fh+++Y
     as00111   146 PRKFISLHRKALESDFVSANLHHWIDLIFGYKQQGPAAVDAVNIFHPYFY 195  

                   eGaVDldsieDPverrAieaqIknFGQTPkQLFtkPHPkR<-*
                      +Dl+si+DP+ +  i++++ nFGQ PkQLFtkPHP R   
     as00111   196 GDRMDLSSITDPLIKSTILGFVSNFGQVPKQLFTKPHPAR    235  

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