# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/as00110.fasta.nr -Q ../query/FLJ00110.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00110, 224 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826681 sequences Expectation_n fit: rho(ln(x))= 5.4409+/-0.000185; mu= 8.1546+/- 0.010 mean_var=80.0724+/-15.355, 0's: 40 Z-trim: 47 B-trim: 0 in 0/67 Lambda= 0.143329 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|10440522|dbj|BAB15791.1| FLJ00110 protein [Homo ( 224) 1509 320.7 1.1e-85 gi|119602938|gb|EAW82532.1| MAX dimerization prote ( 174) 1158 248.0 6.5e-64 gi|114592898|ref|XP_517071.2| PREDICTED: MAD4 isof ( 209) 939 202.8 3.2e-50 gi|6016524|sp|Q14582.2|MAD4_HUMAN RecName: Full=Ma ( 209) 939 202.8 3.2e-50 gi|54696796|gb|AAV38770.1| MAX dimerization protei ( 210) 939 202.8 3.2e-50 gi|119602940|gb|EAW82534.1| MAX dimerization prote ( 265) 939 202.9 3.9e-50 gi|108994870|ref|XP_001118504.1| PREDICTED: simila ( 455) 916 198.3 1.6e-48 gi|73951384|ref|XP_545921.2| PREDICTED: similar to ( 209) 854 185.2 6.3e-45 gi|194209370|ref|XP_001488590.2| PREDICTED: simila ( 156) 839 182.0 4.3e-44 gi|149047434|gb|EDM00104.1| Max dimerization prote ( 261) 834 181.2 1.3e-43 gi|74137371|dbj|BAE22039.1| unnamed protein produc ( 199) 829 180.1 2.2e-43 gi|15030104|gb|AAH11303.1| Max dimerization protei ( 209) 829 180.1 2.3e-43 gi|47847420|dbj|BAD21382.1| mFLJ00110 protein [Mus ( 244) 829 180.1 2.6e-43 gi|111307552|gb|AAI20231.1| MAX dimerization prote ( 209) 824 179.0 4.7e-43 gi|148705500|gb|EDL37447.1| Max dimerization prote ( 172) 822 178.6 5.3e-43 gi|12841625|dbj|BAB25287.1| unnamed protein produc ( 209) 823 178.8 5.4e-43 gi|3914028|sp|Q60948.1|MAD4_MOUSE RecName: Full=Ma ( 209) 820 178.2 8.3e-43 gi|807890|emb|CAA89217.1| HW2.1 (novel protein sim ( 128) 811 176.2 2e-42 gi|149047433|gb|EDM00103.1| Max dimerization prote ( 303) 751 164.1 2.2e-38 gi|126331987|ref|XP_001365277.1| PREDICTED: hypoth ( 205) 729 159.4 3.8e-37 gi|53130290|emb|CAG31474.1| hypothetical protein [ ( 205) 728 159.2 4.3e-37 gi|197129047|gb|ACH45545.1| putative basic helix-l ( 205) 724 158.4 7.7e-37 gi|134025403|gb|AAI35371.1| LOC100124794 protein [ ( 204) 678 148.8 5.6e-34 gi|189514725|ref|XP_687970.3| PREDICTED: similar t ( 163) 675 148.1 7.2e-34 gi|4838473|gb|AAD31010.1|AF127040_1 basic helix-lo ( 236) 665 146.2 4e-33 gi|4838471|gb|AAD31009.1|AF127039_1 basic helix-lo ( 204) 663 145.7 4.8e-33 gi|62533223|gb|AAH93586.1| Unknown (protein for IM ( 151) 660 145.0 5.8e-33 gi|57033059|gb|AAH88828.1| Xmad4 protein [Xenopus ( 203) 658 144.7 9.8e-33 gi|47219970|emb|CAG11503.1| unnamed protein produc ( 282) 612 135.3 9.3e-30 gi|53126489|emb|CAG30960.1| hypothetical protein [ ( 264) 479 107.8 1.7e-21 gi|777415|gb|AAA65182.1| Max interacting protein 1 ( 192) 476 107.1 2e-21 gi|148669748|gb|EDL01695.1| Max interacting protei ( 216) 476 107.1 2.2e-21 gi|1709194|sp|P50540.1|MXI1_MOUSE RecName: Full=MA ( 228) 476 107.1 2.3e-21 gi|699614|dbj|BAA06612.1| Mxi1 protein [Mus muscul ( 234) 476 107.1 2.3e-21 gi|149040384|gb|EDL94422.1| Max interacting protei ( 218) 475 106.9 2.6e-21 gi|39963565|gb|AAH64453.1| Max interacting protein ( 270) 476 107.2 2.6e-21 gi|149040385|gb|EDL94423.1| Max interacting protei ( 192) 474 106.6 2.7e-21 gi|74181928|dbj|BAE32663.1| unnamed protein produc ( 295) 476 107.2 2.8e-21 gi|3914069|sp|O09015.1|MXI1_RAT RecName: Full=MAX- ( 228) 474 106.7 3.1e-21 gi|51980578|gb|AAH81824.1| Max interacting protein ( 228) 474 106.7 3.1e-21 gi|126273121|ref|XP_001368651.1| PREDICTED: simila ( 228) 474 106.7 3.1e-21 gi|73998834|ref|XP_852395.1| PREDICTED: similar to ( 291) 475 107.0 3.2e-21 gi|149634586|ref|XP_001512779.1| PREDICTED: hypoth ( 249) 474 106.7 3.3e-21 gi|111307522|gb|AAI20057.1| MAX interactor 1 [Bos ( 291) 474 106.8 3.7e-21 gi|194042014|ref|XP_001925312.1| PREDICTED: simila ( 291) 474 106.8 3.7e-21 gi|126273119|ref|XP_001368620.1| PREDICTED: simila ( 291) 474 106.8 3.7e-21 gi|149040381|gb|EDL94419.1| Max interacting protei ( 295) 474 106.8 3.7e-21 gi|30585009|gb|AAP36777.1| Homo sapiens MAX intera ( 183) 459 103.5 2.2e-20 gi|15277708|gb|AAH12907.1| MAX interactor 1 [Homo ( 182) 457 103.1 2.9e-20 gi|55959454|emb|CAI15477.1| MAX interactor 1 [Homo ( 218) 457 103.2 3.4e-20 >>gi|10440522|dbj|BAB15791.1| FLJ00110 protein [Homo sap (224 aa) initn: 1509 init1: 1509 opt: 1509 Z-score: 1694.3 bits: 320.7 E(): 1.1e-85 Smith-Waterman score: 1509; 100.000% identity (100.000% similar) in 224 aa overlap (1-224:1-224) 10 20 30 40 50 60 FLJ001 GFAGHGELGASARCLGAVGVGLLLGVGDGGSQPGQEGILREGPSAHVQQWMVGVGLCRAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 GFAGHGELGASARCLGAVGVGLLLGVGDGGSQPGQEGILREGPSAHVQQWMVGVGLCRAL 10 20 30 40 50 60 70 80 90 100 110 120 FLJ001 ETACCPPPPQPDGSVSGSFRRAKLRLYLEQLKQLVPLGPDSTRHTTLSLLKRAKVHIKKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 ETACCPPPPQPDGSVSGSFRRAKLRLYLEQLKQLVPLGPDSTRHTTLSLLKRAKVHIKKL 70 80 90 100 110 120 130 140 150 160 170 180 FLJ001 EEQDRRALSIKEQLQQEHRFLKRRLEQLSVQSVERVRTDSTGSAVSTDDSEQEVDIEGME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 EEQDRRALSIKEQLQQEHRFLKRRLEQLSVQSVERVRTDSTGSAVSTDDSEQEVDIEGME 130 140 150 160 170 180 190 200 210 220 FLJ001 FGPGELDSVGSSSDADDHYSLQSGTGGDSGFGPHCRRLGRPALS :::::::::::::::::::::::::::::::::::::::::::: gi|104 FGPGELDSVGSSSDADDHYSLQSGTGGDSGFGPHCRRLGRPALS 190 200 210 220 >>gi|119602938|gb|EAW82532.1| MAX dimerization protein 4 (174 aa) initn: 1158 init1: 1158 opt: 1158 Z-score: 1303.6 bits: 248.0 E(): 6.5e-64 Smith-Waterman score: 1158; 100.000% identity (100.000% similar) in 174 aa overlap (51-224:1-174) 30 40 50 60 70 80 FLJ001 GLLLGVGDGGSQPGQEGILREGPSAHVQQWMVGVGLCRALETACCPPPPQPDGSVSGSFR :::::::::::::::::::::::::::::: gi|119 MVGVGLCRALETACCPPPPQPDGSVSGSFR 10 20 30 90 100 110 120 130 140 FLJ001 RAKLRLYLEQLKQLVPLGPDSTRHTTLSLLKRAKVHIKKLEEQDRRALSIKEQLQQEHRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RAKLRLYLEQLKQLVPLGPDSTRHTTLSLLKRAKVHIKKLEEQDRRALSIKEQLQQEHRF 40 50 60 70 80 90 150 160 170 180 190 200 FLJ001 LKRRLEQLSVQSVERVRTDSTGSAVSTDDSEQEVDIEGMEFGPGELDSVGSSSDADDHYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LKRRLEQLSVQSVERVRTDSTGSAVSTDDSEQEVDIEGMEFGPGELDSVGSSSDADDHYS 100 110 120 130 140 150 210 220 FLJ001 LQSGTGGDSGFGPHCRRLGRPALS :::::::::::::::::::::::: gi|119 LQSGTGGDSGFGPHCRRLGRPALS 160 170 >>gi|114592898|ref|XP_517071.2| PREDICTED: MAD4 isoform (209 aa) initn: 939 init1: 939 opt: 939 Z-score: 1057.8 bits: 202.8 E(): 3.2e-50 Smith-Waterman score: 939; 100.000% identity (100.000% similar) in 145 aa overlap (80-224:65-209) 50 60 70 80 90 100 FLJ001 WMVGVGLCRALETACCPPPPQPDGSVSGSFRRAKLRLYLEQLKQLVPLGPDSTRHTTLSL :::::::::::::::::::::::::::::: gi|114 GQFGEGQEQQSELCLSVFLNRSSHNELEKHRRAKLRLYLEQLKQLVPLGPDSTRHTTLSL 40 50 60 70 80 90 110 120 130 140 150 160 FLJ001 LKRAKVHIKKLEEQDRRALSIKEQLQQEHRFLKRRLEQLSVQSVERVRTDSTGSAVSTDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LKRAKVHIKKLEEQDRRALSIKEQLQQEHRFLKRRLEQLSVQSVERVRTDSTGSAVSTDD 100 110 120 130 140 150 170 180 190 200 210 220 FLJ001 SEQEVDIEGMEFGPGELDSVGSSSDADDHYSLQSGTGGDSGFGPHCRRLGRPALS ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SEQEVDIEGMEFGPGELDSVGSSSDADDHYSLQSGTGGDSGFGPHCRRLGRPALS 160 170 180 190 200 >>gi|6016524|sp|Q14582.2|MAD4_HUMAN RecName: Full=Max-in (209 aa) initn: 939 init1: 939 opt: 939 Z-score: 1057.8 bits: 202.8 E(): 3.2e-50 Smith-Waterman score: 939; 100.000% identity (100.000% similar) in 145 aa overlap (80-224:65-209) 50 60 70 80 90 100 FLJ001 WMVGVGLCRALETACCPPPPQPDGSVSGSFRRAKLRLYLEQLKQLVPLGPDSTRHTTLSL :::::::::::::::::::::::::::::: gi|601 GDFAREKTKAAGLVRKAPNNRSSHNELEKHRRAKLRLYLEQLKQLVPLGPDSTRHTTLSL 40 50 60 70 80 90 110 120 130 140 150 160 FLJ001 LKRAKVHIKKLEEQDRRALSIKEQLQQEHRFLKRRLEQLSVQSVERVRTDSTGSAVSTDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|601 LKRAKVHIKKLEEQDRRALSIKEQLQQEHRFLKRRLEQLSVQSVERVRTDSTGSAVSTDD 100 110 120 130 140 150 170 180 190 200 210 220 FLJ001 SEQEVDIEGMEFGPGELDSVGSSSDADDHYSLQSGTGGDSGFGPHCRRLGRPALS ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|601 SEQEVDIEGMEFGPGELDSVGSSSDADDHYSLQSGTGGDSGFGPHCRRLGRPALS 160 170 180 190 200 >>gi|54696796|gb|AAV38770.1| MAX dimerization protein 4 (210 aa) initn: 939 init1: 939 opt: 939 Z-score: 1057.7 bits: 202.8 E(): 3.2e-50 Smith-Waterman score: 939; 100.000% identity (100.000% similar) in 145 aa overlap (80-224:65-209) 50 60 70 80 90 100 FLJ001 WMVGVGLCRALETACCPPPPQPDGSVSGSFRRAKLRLYLEQLKQLVPLGPDSTRHTTLSL :::::::::::::::::::::::::::::: gi|546 GDFAREKTKAAGLVRKAPNNRSSHNELEKHRRAKLRLYLEQLKQLVPLGPDSTRHTTLSL 40 50 60 70 80 90 110 120 130 140 150 160 FLJ001 LKRAKVHIKKLEEQDRRALSIKEQLQQEHRFLKRRLEQLSVQSVERVRTDSTGSAVSTDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|546 LKRAKVHIKKLEEQDRRALSIKEQLQQEHRFLKRRLEQLSVQSVERVRTDSTGSAVSTDD 100 110 120 130 140 150 170 180 190 200 210 220 FLJ001 SEQEVDIEGMEFGPGELDSVGSSSDADDHYSLQSGTGGDSGFGPHCRRLGRPALS ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|546 SEQEVDIEGMEFGPGELDSVGSSSDADDHYSLQSGTGGDSGFGPHCRRLGRPALSL 160 170 180 190 200 210 >>gi|119602940|gb|EAW82534.1| MAX dimerization protein 4 (265 aa) initn: 939 init1: 939 opt: 939 Z-score: 1056.3 bits: 202.9 E(): 3.9e-50 Smith-Waterman score: 939; 100.000% identity (100.000% similar) in 145 aa overlap (80-224:121-265) 50 60 70 80 90 100 FLJ001 WMVGVGLCRALETACCPPPPQPDGSVSGSFRRAKLRLYLEQLKQLVPLGPDSTRHTTLSL :::::::::::::::::::::::::::::: gi|119 GDFAREKTKAAGLVRKAPNNRSSHNELEKHRRAKLRLYLEQLKQLVPLGPDSTRHTTLSL 100 110 120 130 140 150 110 120 130 140 150 160 FLJ001 LKRAKVHIKKLEEQDRRALSIKEQLQQEHRFLKRRLEQLSVQSVERVRTDSTGSAVSTDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LKRAKVHIKKLEEQDRRALSIKEQLQQEHRFLKRRLEQLSVQSVERVRTDSTGSAVSTDD 160 170 180 190 200 210 170 180 190 200 210 220 FLJ001 SEQEVDIEGMEFGPGELDSVGSSSDADDHYSLQSGTGGDSGFGPHCRRLGRPALS ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SEQEVDIEGMEFGPGELDSVGSSSDADDHYSLQSGTGGDSGFGPHCRRLGRPALS 220 230 240 250 260 >>gi|108994870|ref|XP_001118504.1| PREDICTED: similar to (455 aa) initn: 581 init1: 581 opt: 916 Z-score: 1027.3 bits: 198.3 E(): 1.6e-48 Smith-Waterman score: 916; 96.000% identity (96.667% similar) in 150 aa overlap (80-224:306-455) 50 60 70 80 90 100 FLJ001 WMVGVGLCRALETACCPPPPQPDGSVSGSFRRAKLRLYLEQLKQLVPLGPDSTRHTTLSL :::::::::::::::::::::::::::::: gi|108 GDFTREKTKAASLVRKAPNNRSSHNELEKHRRAKLRLYLEQLKQLVPLGPDSTRHTTLSL 280 290 300 310 320 330 110 120 130 140 150 160 FLJ001 LKRAKVHIKKLEEQDRRALSIKEQLQQEHRFLKRRLEQLSVQSVERVRTDSTGSAVSTDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|108 LKRAKVHIKKLEEQDRRALSIKEQLQQEHRFLKRRLEQLSVQSVERVRTDSTGSAVSTDD 340 350 360 370 380 390 170 180 190 200 210 220 FLJ001 SEQE-----VDIEGMEFGPGELDSVGSSSDADDHYSLQSGTGGDSGFGPHCRRLGRPALS :::: :::::::::::::::::::::::::::::::.::::::::::::::::::: gi|108 SEQEKGEMEVDIEGMEFGPGELDSVGSSSDADDHYSLQSGSGGDSGFGPHCRRLGRPALS 400 410 420 430 440 450 >>gi|73951384|ref|XP_545921.2| PREDICTED: similar to Max (209 aa) initn: 854 init1: 854 opt: 854 Z-score: 962.8 bits: 185.2 E(): 6.3e-45 Smith-Waterman score: 854; 90.345% identity (97.241% similar) in 145 aa overlap (80-224:65-209) 50 60 70 80 90 100 FLJ001 WMVGVGLCRALETACCPPPPQPDGSVSGSFRRAKLRLYLEQLKQLVPLGPDSTRHTTLSL :::::::::::::::::::::::::::::: gi|739 GDFARKKTKAAGLVRKAPNNRSSHNELEKHRRAKLRLYLEQLKQLVPLGPDSTRHTTLSL 40 50 60 70 80 90 110 120 130 140 150 160 FLJ001 LKRAKVHIKKLEEQDRRALSIKEQLQQEHRFLKRRLEQLSVQSVERVRTDSTGSAVSTDD :::::.::::::::::::::::::::.:::::::::::::.::.:::::::::::::::: gi|739 LKRAKMHIKKLEEQDRRALSIKEQLQREHRFLKRRLEQLSMQSLERVRTDSTGSAVSTDD 100 110 120 130 140 150 170 180 190 200 210 220 FLJ001 SEQEVDIEGMEFGPGELDSVGSSSDADDHYSLQSGTGGDSGFGPHCRRLGRPALS ::::::.::::::::::::::::::.::::::::: .:.:.:: ::: :::.:: gi|739 SEQEVDVEGMEFGPGELDSVGSSSDVDDHYSLQSGGCSDGGYGPPCRRPGRPGLS 160 170 180 190 200 >>gi|194209370|ref|XP_001488590.2| PREDICTED: similar to (156 aa) initn: 839 init1: 839 opt: 839 Z-score: 947.8 bits: 182.0 E(): 4.3e-44 Smith-Waterman score: 839; 88.966% identity (97.241% similar) in 145 aa overlap (80-224:12-156) 50 60 70 80 90 100 FLJ001 WMVGVGLCRALETACCPPPPQPDGSVSGSFRRAKLRLYLEQLKQLVPLGPDSTRHTTLSL :::::::::::::::::::::::::::::: gi|194 MWSSHNELEKHRRAKLRLYLEQLKQLVPLGPDSTRHTTLSL 10 20 30 40 110 120 130 140 150 160 FLJ001 LKRAKVHIKKLEEQDRRALSIKEQLQQEHRFLKRRLEQLSVQSVERVRTDSTGSAVSTDD ::::..::::::::::::::::::::.::::::::::::::::.:::::::::::::::: gi|194 LKRARMHIKKLEEQDRRALSIKEQLQREHRFLKRRLEQLSVQSLERVRTDSTGSAVSTDD 50 60 70 80 90 100 170 180 190 200 210 220 FLJ001 SEQEVDIEGMEFGPGELDSVGSSSDADDHYSLQSGTGGDSGFGPHCRRLGRPALS ::::::.::::::::::::::::::.::.:::::: .:...:: ::: :::.:: gi|194 SEQEVDVEGMEFGPGELDSVGSSSDVDDQYSLQSGGCSDGSYGPPCRRPGRPSLS 110 120 130 140 150 >>gi|149047434|gb|EDM00104.1| Max dimerization protein 4 (261 aa) initn: 834 init1: 834 opt: 834 Z-score: 939.1 bits: 181.2 E(): 1.3e-43 Smith-Waterman score: 834; 91.034% identity (95.862% similar) in 145 aa overlap (80-224:117-261) 50 60 70 80 90 100 FLJ001 WMVGVGLCRALETACCPPPPQPDGSVSGSFRRAKLRLYLEQLKQLVPLGPDSTRHTTLSL :::::::::::::::::::::::::::::: gi|149 GDFARKKTKTAGLVRKAPNNRSSHNELEKHRRAKLRLYLEQLKQLVPLGPDSTRHTTLSL 90 100 110 120 130 140 110 120 130 140 150 160 FLJ001 LKRAKVHIKKLEEQDRRALSIKEQLQQEHRFLKRRLEQLSVQSVERVRTDSTGSAVSTDD :::::.::::::::::::::::::::.::::::::::::::::::::::::::::::::: gi|149 LKRAKMHIKKLEEQDRRALSIKEQLQREHRFLKRRLEQLSVQSVERVRTDSTGSAVSTDD 150 160 170 180 190 200 170 180 190 200 210 220 FLJ001 SEQEVDIEGMEFGPGELDSVGSSSDADDHYSLQSGTGGDSGFGPHCRRLGRPALS ::::::::::::::::::::::::::::::::::. .::..: ::: : :.:: gi|149 SEQEVDIEGMEFGPGELDSVGSSSDADDHYSLQSSGCSDSSYGHPCRRPGCPGLS 210 220 230 240 250 260 224 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 23:46:16 2009 done: Fri Feb 27 23:51:12 2009 Total Scan time: 698.270 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]