# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/as00108.fasta.huge -Q ../query/FLJ00108.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00108, 216 aa vs ./tmplib.10216 library 2210778 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 3.8242+/-0.00449; mu= 20.1163+/- 0.305 mean_var=121.4696+/-26.584, 0's: 0 Z-trim: 2 B-trim: 0 in 0/40 Lambda= 0.116370 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0762 ( 724 res) hk04668s1 ( 724) 256 53.5 3.1e-08 FLJ00259 ( 659 res) sh04102 ( 659) 114 29.5 0.45 KIAA0079 ( 1102 res) ha03543 (1102) 100 27.6 2.9 KIAA0515 ( 670 res) hg00183 ( 670) 97 26.7 3.2 KIAA0860 ( 551 res) hk06518 ( 551) 96 26.4 3.3 KIAA1668 ( 791 res) fh11717 ( 791) 96 26.7 3.9 KIAA1542 ( 1654 res) hh03408 (1654) 98 27.6 4.3 FLJ00349 ( 146 res) sg00018 ( 146) 87 23.8 5.3 KIAA0029 ( 974 res) ha00566 ( 974) 92 26.2 6.9 KIAA1683 ( 832 res) fh24307 ( 832) 90 25.7 8.1 FLJ00176 ( 403 res) sj00934 ( 403) 86 24.5 9.3 FLJ00072 ( 204 res) as00072 ( 204) 83 23.4 9.8 KIAA1475 ( 986 res) fj03454 ( 986) 89 25.7 9.8 KIAA1831 ( 663 res) hk00543 ( 663) 87 25.0 10 KIAA1071 ( 675 res) hj05664s2 ( 675) 87 25.0 10 KIAA1811 ( 715 res) ha06731 ( 715) 87 25.1 11 KIAA1087 ( 952 res) hk02378 ( 952) 88 25.5 11 KIAA2037 ( 494 res) pj01545 ( 494) 84 24.3 13 KIAA1744 ( 855 res) pj01516 ( 855) 86 25.1 13 KIAA1269 ( 531 res) hk04070 ( 531) 84 24.3 13 FLJ00019 ( 732 res) as00019 ( 732) 85 24.8 14 FLJ00252 ( 819 res) sj09394 ( 819) 85 24.9 14 KIAA0554 ( 674 res) hh00877 ( 674) 84 24.5 15 KIAA1431 ( 891 res) fj00022 ( 891) 85 24.9 15 KIAA0422 ( 1160 res) hh01205s1 (1160) 86 25.3 15 KIAA0401 ( 344 res) hg01095 ( 344) 81 23.5 16 FLJ00253 ( 349 res) sj09455 ( 349) 81 23.5 16 KIAA0410 ( 505 res) hg01877 ( 505) 82 24.0 16 KIAA1858 ( 2469 res) ae00147 (2469) 88 26.2 17 KIAA1639 ( 2584 res) af14886 (2584) 88 26.3 17 KIAA1869 ( 935 res) hh01800 ( 935) 84 24.8 17 FLJ00173 ( 1269 res) sj00667 (1269) 85 25.2 17 KIAA1187 ( 813 res) fk03027 ( 813) 83 24.5 18 FLJ00382 ( 482 res) sj02645 ( 482) 80 23.6 20 KIAA1327 ( 1804 res) fh14466s1 (1804) 85 25.5 20 KIAA0378 ( 970 res) hh00502s1 ( 970) 82 24.5 22 FLJ00324 ( 376 res) sj01157 ( 376) 78 23.1 23 KIAA0490 ( 135 res) hh00727 ( 135) 74 21.6 23 FLJ00086 ( 399 res) as00086 ( 399) 78 23.1 24 KIAA1908 ( 445 res) ah02604 ( 445) 78 23.2 25 KIAA0194 ( 1435 res) ha02703 (1435) 82 24.8 26 KIAA1931 ( 514 res) fj14393 ( 514) 78 23.3 26 KIAA0326 ( 927 res) hg00579 ( 927) 80 24.1 27 KIAA0134 ( 587 res) ha04001 ( 587) 78 23.4 28 FLJ00277 ( 357 res) sh01540 ( 357) 76 22.7 28 FLJ00062 ( 484 res) as00062 ( 484) 77 23.1 29 KIAA0623 ( 1100 res) hg04615 (1100) 79 24.1 33 FLJ00235 ( 141 res) sj07209 ( 141) 71 21.1 33 KIAA1203 ( 727 res) fg03361 ( 727) 77 23.4 34 KIAA1575 ( 1010 res) fj01374s1 (1010) 78 23.8 35 >>KIAA0762 ( 724 res) hk04668s1 (724 aa) initn: 288 init1: 128 opt: 256 Z-score: 241.2 bits: 53.5 E(): 3.1e-08 Smith-Waterman score: 256; 46.429% identity (72.619% similar) in 84 aa overlap (1-81:219-302) 10 20 30 FLJ001 SAELEVQRRHSLVSFVVRIVPSPDWFVGVD :::. :.: . :.::.. . ::::: ::.. KIAA07 IRQQSDEVLTVIKAKAQWPAWQPLNVRAAPSAEFSVDRTRHLMSFLTMMGPSPDWNVGLS 190 200 210 220 230 240 40 50 60 70 80 FLJ001 SLDLCDGD-RWREQAALDLYPYDAGTDSGFTFSSPNFATIPQDTVTEVSG--HPACARAA . ::: . : .... :: :.::::::: :. ::: ::::. . ... :: KIAA07 AEDLCTKECGWVQKVVQDLIPWDAGTDSGVTYESPNKPTIPQEKIRPLTSLDHPQSPFYD 250 260 270 280 290 300 90 100 110 120 130 140 FLJ001 MAPAVGTGLGPGCTLASQPRTAACGFCVEEALLLAPAVSKGVQPSHTLPTRGHSTAGRTA KIAA07 PEGGSITQVARVVIERIARKGEQCNIVPDNVDDIVADLAPEEKDEDDTPETCIYSNWSPW 310 320 330 340 350 360 >>FLJ00259 ( 659 res) sh04102 (659 aa) initn: 72 init1: 48 opt: 114 Z-score: 112.7 bits: 29.5 E(): 0.45 Smith-Waterman score: 114; 28.972% identity (53.271% similar) in 107 aa overlap (104-206:98-201) 80 90 100 110 120 130 FLJ001 VTEVSGHPACARAAMAPAVGTGLGPGCTLASQPRTAACGFCVEEALLLAPAVSKGV--QP :. : . : : ... : ...: :: FLJ002 GDSTGGRPRSRAVASTVHNTHQPQAQQNEPSECRGSQFGCCYDNVATAAGPLGEGCVGQP 70 80 90 100 110 120 140 150 160 170 180 FLJ001 SHTLPTRG--HSTAGRTAGRASRGGRPFLASVSSPCSVGWLRGVHGTLSPTVVQRVRWTL ::. :.: :. : : :.: :.:::.. :. : : ::. . . .. . FLJ002 SHAYPVRCLLPSAHGSCADWAARWY--FVASVGQ-CNRFWYGGCHGNANNFASEQECMSS 130 140 150 160 170 180 190 200 210 FLJ001 GSGPSEAIRIPEGGLLGPQANLFFLPR .: .. : :. : : FLJ002 CQGSLHGPRRPQPGASGRSTHTDGGGSSPAGEQEPSQHRTGAAVQRKPWPSGGLWRQDQQ 190 200 210 220 230 240 >>KIAA0079 ( 1102 res) ha03543 (1102 aa) initn: 112 init1: 61 opt: 100 Z-score: 98.2 bits: 27.6 E(): 2.9 Smith-Waterman score: 107; 26.316% identity (47.368% similar) in 152 aa overlap (75-215:146-296) 50 60 70 80 90 100 FLJ001 ALDLYPYDAGTDSGFTFSSPNFATIPQDTVTEVSGHPACARAAMAP-AVGTGLGPGCTLA :..:: . .: :: . : :.:: .:: KIAA00 QPFGSPLAPVGNQPPVLQPYGPPPTSAQVATQLSGMQISGAVAPAPPSSGLGFGPPTSLA 120 130 140 150 160 170 110 120 130 140 150 160 FLJ001 SQPRT-AACGFCVEEALLLAPAVSKGV-QPSHTLPTRGHSTAGRTAGRASRGGRPFLASV : . :. :: .:.. .:. : :. . . . . :: : : :. KIAA00 SASGSFPNSGLYGSYPQGQAPPLSQAQGHPGIQTPQRSAPSQASSFTPPASGG-PRLPSM 180 190 200 210 220 230 170 180 190 200 210 FLJ001 SSPCSVGWLRGVHGTLSPTVVQRVRWTL--GS------GPSEAIRIPEGGLLGPQANLFF ..: : : .. .:. :. .: :. :: .. :. :: : : KIAA00 TGPLLPGQSFGGPSVSQPNHVSSPPQALPPGTQMTGPLGPLPPMHSPQQPGYQPQQNGSF 240 250 260 270 280 290 FLJ001 LPR : KIAA00 GPARGPQSNYGGPYPAAPTFGSQPGPPQPLPPKRLDPDAIPSPIQVIEDDRNNRGTEPFV 300 310 320 330 340 350 >>KIAA0515 ( 670 res) hg00183 (670 aa) initn: 40 init1: 40 opt: 97 Z-score: 97.2 bits: 26.7 E(): 3.2 Smith-Waterman score: 97; 27.737% identity (52.555% similar) in 137 aa overlap (50-179:326-447) 20 30 40 50 60 70 FLJ001 VPSPDWFVGVDSLDLCDGDRWREQAALDLYPYDAGTDSGFTFSSPNFATIPQDTVTEVSG : ..:..:: ..:: . ...: :. :. KIAA05 KMESARKAWENSPSLPEQSSPGGAGSGIQPPSSVGASSGVNYSSFGGVSMPPMPVASVA- 300 310 320 330 340 350 80 90 100 110 120 130 FLJ001 HPACARAAMAPAVGTGLGP----GCTLASQPRTAACGFCVEEALLLAPAVSKGVQPSHTL :. :.: : :. : : : ..::::: . . ... : :... . KIAA05 -PS---ASM-P--GSHLPPLYLDGHVFASQPRLVPQTIPQQQSYQQAAAAQQ-------I 360 370 380 390 400 140 150 160 170 180 190 FLJ001 PTRGHSTAGRTAGRASRGGRPFLASVSSPCSVGWLRG---VHGTLSPTVVQRVRWTLGSG : :.. : . ::: : : :. .:. .: .::: KIAA05 PISLHTSLQAQAQLGLRGGLPVSQSQEIFSSLQPFRSQVYMHPSLSPPSTMILSGGTALK 410 420 430 440 450 460 200 210 FLJ001 PSEAIRIPEGGLLGPQANLFFLPR KIAA05 PPYSAFPGMQPLEMVKPQSGSPYQPMSGNQALVYEGQLSQAAGLGASQMLDSQLPQLTMP 470 480 490 500 510 520 >>KIAA0860 ( 551 res) hk06518 (551 aa) initn: 79 init1: 50 opt: 96 Z-score: 97.0 bits: 26.4 E(): 3.3 Smith-Waterman score: 98; 26.633% identity (48.241% similar) in 199 aa overlap (19-204:287-464) 10 20 30 40 FLJ001 SAELEVQRRHSLVSFVVRIVPSPDWFVGVDSLDLCDGDRWREQAALDL ..:: . ..:. :. : .:. KIAA08 SSLQKLAEIIQDVPEEFLDPITLEIMPCPMLLPSGK-VIDQSTLEKCN----RSEATWGR 260 270 280 290 300 310 50 60 70 80 90 FLJ001 YPYDAGTDSGFTFSSPNFATIPQDTVTEVSGH-------PAC---ARAAMAPAVGTGLGP : : : .:: :. .:. .. : :.: .:: : :: . KIAA08 VPSDPFTGVAFT---PHSQPLPHPSLKARIDHFLLQHSIPGCHLLGRAQTALAV---IPS 320 330 340 350 360 100 110 120 130 140 150 FLJ001 GCTLASQPRTAACGFCVEEALLLAPAVSKGVQPS---HTLPTRGHSTAGRTAGRASRGGR . .: :: : .:.: . : . ::. : : : .:. .:: . . .. KIAA08 SIVLPSQKRK------IEQAEHV-PDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNE 370 380 390 400 410 160 170 180 190 200 210 FLJ001 PFLASVSSPCSVGWLRGVHGTLSPTVVQRVRWTLGSGPSEAIRIPEGGLLGPQANLFFLP : :. .. ::.: : . :: .. . :::: :: . :. .: : KIAA08 PSLTHMD--CSTGPLSH-EQKLSQSLEIALASTLGSMPSFTARLTRGQLQHLGTRGSNTS 420 430 440 450 460 470 FLJ001 R KIAA08 WRPGTGSEQPGSILGPECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCT 480 490 500 510 520 530 >>KIAA1668 ( 791 res) fh11717 (791 aa) initn: 43 init1: 43 opt: 96 Z-score: 95.7 bits: 26.7 E(): 3.9 Smith-Waterman score: 96; 25.688% identity (48.624% similar) in 109 aa overlap (50-156:428-530) 20 30 40 50 60 70 FLJ001 VPSPDWFVGVDSLDLCDGDRWREQAALDLYPYDAGTDSGFTFSSPNFATIPQDTVTEVSG : .: . ... : . . : . .:. KIAA16 SSPKTKKRPAPRAPSASPLALHASRLSHSEPPSATPSPALSVESLSSESASQTAGAELLE 400 410 420 430 440 450 80 90 100 110 120 130 FLJ001 HPACARAAMAPAVGTGLGPG--CTLASQPRTAACGFCVEEALLLAPAVSKGVQPSHTLPT :: ... ::: . :: .:... :. : :: . : .: :. : : KIAA16 PPAVPKSSSEPAVHAPGTPGNPVSLSTNSSLASSGELVEPRVEQMPQASPGLAPR----T 460 470 480 490 500 510 140 150 160 170 180 190 FLJ001 RGHSTAGRTAGRASRGGRPFLASVSSPCSVGWLRGVHGTLSPTVVQRVRWTLGSGPSEAI :: : : .. :. : KIAA16 RGSS--GPQPAKPCSGATPTPLLLVGDRSPVPSPGSSSPQLQVKSSCKENPFNRKPSPAA 520 530 540 550 560 570 >>KIAA1542 ( 1654 res) hh03408 (1654 aa) initn: 121 init1: 45 opt: 98 Z-score: 95.0 bits: 27.6 E(): 4.3 Smith-Waterman score: 98; 27.225% identity (50.262% similar) in 191 aa overlap (30-208:1260-1434) 10 20 30 40 50 FLJ001 SAELEVQRRHSLVSFVVRIVPSPDWFVGVDSLDLCDGDRWREQAALDLYPYDAGTDSGF :.::: :: . ..: . :: . KIAA15 EAHVSPEVATADKAPLQAPPVLEVAAECEPDDLDLDYGDSVEAGHVFDDFSSDAVFIQLD 1230 1240 1250 1260 1270 1280 60 70 80 90 100 110 FLJ001 TFSSP-NFATIPQDTVTEVSGHPACARAAMAPAVGTGLGPGCTLA-----SQPRTAACGF .::: . . .. . .:: :..: :. . .: ::: : KIAA15 DMSSPPSPESTDSSPERDFPLKPALPPASLAVAA---IQREVSLMHDEDPSQPPPLPEG- 1290 1300 1310 1320 1330 1340 120 130 140 150 160 170 FLJ001 CVEEALLLAP-AVSKGVQPSHT-LPTRGHSTAGRTAGRASRGGRPFLASVSSPCSVGWLR ..: :: : :. :. :: . :. . ..::.....:: . ..: :: KIAA15 -TQEPHLLRPDAAEKAEAPSSPDVAPAGKEDSPSASGRVQEAARPEEVVSQTP----LLR 1350 1360 1370 1380 1390 1400 180 190 200 210 FLJ001 GVHGTLSPTVVQRVRWTL----GSGPSEAIRIPEGGLLGPQANLFFLPR : ..:.:: :.: .:.:.: : :.. : :: KIAA15 ------SRALVKRVTWNLQESESSAPAED-RAPRAPLHRPQKPREGAWDMEDVAPTGVRQ 1410 1420 1430 1440 1450 KIAA15 AFSELPFPSHVLPEPGFPDTDPSQVYSPGLPPAPAQPSSIPPCALVSQPTVQFILQGSLP 1460 1470 1480 1490 1500 1510 >>FLJ00349 ( 146 res) sg00018 (146 aa) initn: 47 init1: 47 opt: 87 Z-score: 93.4 bits: 23.8 E(): 5.3 Smith-Waterman score: 87; 29.412% identity (47.059% similar) in 136 aa overlap (81-207:17-136) 60 70 80 90 100 FLJ001 YDAGTDSGFTFSSPNFATIPQDTVTEVSGHPACARAAMAPAVGT-GLGPGCTLASQPRTA : : ::: ..:. : :: : .. FLJ003 LPGDFDPLLHPFMFLSPQCKRAACFLSAGSVGSEPG------P-SV 10 20 30 110 120 130 140 150 160 FLJ001 ACGFCVEEALLLAPAVSKGVQPSHTLPTRGHSTAGRTAGRASRGGRPFLASVSSPCSVGW : .:.. ..: .. .: : ::. . ::: : .: :. . : : : FLJ003 QC-LCTQ---IIACVTEDSVLSCHLLPS-CCPVPGRTRMPPSLSG-PWQS--LRPGSEGR 40 50 60 70 80 90 170 180 190 200 210 FLJ001 LRGVHG--------TLSPTVVQRVRWTLGSGPSEAIRIPEGGLLGPQANLFFLPR :: : ::.: :::. .: . . .:: :: FLJ003 GRGPAGRRGLGAPDTLAPREGAGVRWSARAGGPLVSGLGTAGL-GPPGCVGPRLWP 100 110 120 130 140 >>KIAA0029 ( 974 res) ha00566 (974 aa) initn: 65 init1: 65 opt: 92 Z-score: 91.3 bits: 26.2 E(): 6.9 Smith-Waterman score: 94; 29.474% identity (51.579% similar) in 95 aa overlap (121-213:331-413) 100 110 120 130 140 FLJ001 AVGTGLGPGCTLASQPRTAACGFCVEEALLLAPAVSKGVQPSH-TLPTRGHST-AGRTAG : :::.:. . : .. ::: :. .... : KIAA00 NSHQSSTENELKYSEPRPWSSTDSDSSLRNLKPAVTKASSFSGISVLTRGDSSGSSKSIG 310 320 330 340 350 360 150 160 170 180 190 200 FLJ001 RASRGGRPFLASVSSPCSVGWLRGVHGTLSPTVVQRVRWTLGSGPSEAIRIPEGGLLGPQ : :. :.::. .:: . : . : :: . . :. . : : KIAA00 RLSKTGQPFINPDGSPVVYN---------PPMTQQPVRSQVPGPPQPPLPAPP---QQPA 370 380 390 400 210 FLJ001 ANLFFLPR :: .: KIAA00 ANHIFSQQDNLGSQFSHMSLARQPSADGSDPHAAMFQSTVVLQSPQQSGYIMTAAPPPHP 410 420 430 440 450 460 >>KIAA1683 ( 832 res) fh24307 (832 aa) initn: 114 init1: 47 opt: 90 Z-score: 90.1 bits: 25.7 E(): 8.1 Smith-Waterman score: 90; 22.277% identity (50.495% similar) in 202 aa overlap (5-197:216-405) 10 20 30 FLJ001 SAELEVQRRHSLVSFVVRIVPSPDWFVGVDSLDL ::. . .: .... ::::. .. KIAA16 YQPTEISPSSGYLSVATEVSPSPGYPSQLTEVSPSSGYLSVATEVSPSPDYSSQPTEMSP 190 200 210 220 230 240 40 50 60 70 80 90 FLJ001 CDG--DRWREQAALDLYPYDAGTDSGFTFSSPNFATIPQDTVTEVSGHPACARAAMAPAV .: . : . ::.. :. . . . : :: . .... : . .. :.: KIAA16 SSGYLSMATEVSPSPGYPFQP-TEVSPSPDYPCVATGESPSLAQPSQPTEVSPSSAYPSV 250 260 270 280 290 300 100 110 120 130 140 FLJ001 GTGLGPGCTLASQ-----PRTAACGFCVEEALLLA--PAVSKGVQPSHTLPTRGHSTAGR :: .:. . . : : . : : . :. :.: : .:: . :.. KIAA16 VTGESPSLAQSYQRTEVFP-SPAYPFMATEVSPSPGDPSVVTGESPSPAYPSQ------- 310 320 330 340 350 150 160 170 180 190 200 FLJ001 TAGRASRGGRPFLASVSSPCSVGWLRGVHGTLSPTVVQRVRWTLGSGPSEAIRIPEGGLL .:.. .: :. ::: . . . .::.... . :.: .:: :. KIAA16 PTGESPSLTQPSLTIRVSPCLA--MSSQTIGVSPSLAMPSQ-TIGVSPSLAMPFHTIGVS 360 370 380 390 400 410 210 FLJ001 GPQANLFFLPR KIAA16 PTLAHPSMAIRESPSLAQPPQSTGESPSLTWPSQATGVSPSVAHQSVASRVSSSLAQPSQ 420 430 440 450 460 470 216 residues in 1 query sequences 2210778 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:34:53 2009 done: Fri Feb 27 10:34:53 2009 Total Scan time: 0.380 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]