hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna/full/aisin/as00107/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: as00107 1234 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ZnF_C2H2 zinc finger 453.6 9.6e-132 29 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ZnF_C2H2 1/29 41 63 .. 1 23 [] 25.3 0.0086 ZnF_C2H2 2/29 69 91 .. 1 23 [] 20.2 0.3 ZnF_C2H2 3/29 97 119 .. 1 23 [] 26.7 0.0032 ZnF_C2H2 4/29 125 147 .. 1 23 [] 22.9 0.044 ZnF_C2H2 5/29 169 192 .. 1 23 [] 17.8 1.5 ZnF_C2H2 6/29 204 227 .. 1 23 [] 19.1 0.64 ZnF_C2H2 7/29 233 255 .. 1 23 [] 21.4 0.13 ZnF_C2H2 8/29 328 352 .. 1 23 [] 18.4 0.99 ZnF_C2H2 9/29 360 383 .. 1 23 [] 21.2 0.14 ZnF_C2H2 10/29 400 423 .. 1 23 [] 24.1 0.02 ZnF_C2H2 11/29 436 459 .. 1 23 [] 21.5 0.12 ZnF_C2H2 12/29 483 508 .. 1 23 [] 16.3 4.2 ZnF_C2H2 13/29 557 579 .. 1 23 [] 27.0 0.0025 ZnF_C2H2 14/29 587 609 .. 1 23 [] 29.5 0.00047 ZnF_C2H2 15/29 617 640 .. 1 23 [] 27.9 0.0014 ZnF_C2H2 16/29 645 668 .. 1 23 [] 24.2 0.018 ZnF_C2H2 17/29 675 698 .. 1 23 [] 24.6 0.014 ZnF_C2H2 18/29 706 728 .. 1 23 [] 22.9 0.046 ZnF_C2H2 19/29 732 755 .. 1 23 [] 21.9 0.089 ZnF_C2H2 20/29 809 832 .. 1 23 [] 16.3 4.2 ZnF_C2H2 21/29 853 875 .. 1 23 [] 32.3 6.8e-05 ZnF_C2H2 22/29 882 904 .. 1 23 [] 27.9 0.0014 ZnF_C2H2 23/29 911 933 .. 1 23 [] 12.9 11 ZnF_C2H2 24/29 943 965 .. 1 23 [] 5.6 74 ZnF_C2H2 25/29 1061 1084 .. 1 23 [] 22.9 0.044 ZnF_C2H2 26/29 1118 1140 .. 1 23 [] 22.6 0.056 ZnF_C2H2 27/29 1148 1170 .. 1 23 [] 19.4 0.52 ZnF_C2H2 28/29 1179 1202 .. 1 23 [] 22.4 0.063 ZnF_C2H2 29/29 1209 1232 .. 1 23 [] 18.1 1.3 Alignments of top-scoring domains: ZnF_C2H2: domain 1 of 29, from 41 to 63: score 25.3, E = 0.0086 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ C+ksfs+ + Lk+H ++H as00107 41 YPCQF-CDKSFSRLsYLKHHEQSH 63 ZnF_C2H2: domain 2 of 29, from 69 to 91: score 20.2, E = 0.3 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ C++ f++k++ rH++ H as00107 69 FKCTY-CSRLFKHKrSRDRHIKLH 91 ZnF_C2H2: domain 3 of 29, from 97 to 119: score 26.7, E = 0.0032 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C+ fs+ ++Lk H+++H as00107 97 YHCSE-CDAAFSRSdHLKIHLKTH 119 ZnF_C2H2: domain 4 of 29, from 125 to 147: score 22.9, E = 0.044 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC i C + f s ++L Hm+vH as00107 125 YKCAI-CRRGFLSSsSLHGHMQVH 147 ZnF_C2H2: domain 5 of 29, from 169 to 192: score 17.8, E = 1.5 *->ykCpigCgksfssk.aLkrHmr.vH<-* kC++ C + f +++L++H+ + H as00107 169 QKCSQ-CEEGFDFPeDLQKHIAeCH 192 ZnF_C2H2: domain 6 of 29, from 204 to 227: score 19.1, E = 0.64 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C + C++ f +++L +Hm +vH as00107 204 LQCVY-CHELFVEEtSLMNHMEqVH 227 ZnF_C2H2: domain 7 of 29, from 233 to 255: score 21.4, E = 0.13 *->ykCpigCgksfssk.aLkrHmrvH<-* C+i C++sf++ ++L Hm +H as00107 233 NSCSI-CSESFHTVeELYSHMDSH 255 ZnF_C2H2: domain 8 of 29, from 328 to 352: score 18.4, E = 0.99 *->ykCpigCg.ksfssk.aLkrHmr.vH<-* y C + C+++ fss L+ H++++H as00107 328 YSCIY-CNkQLFSSLaVLQIHLKtMH 352 ZnF_C2H2: domain 9 of 29, from 360 to 383: score 21.2, E = 0.14 *->ykCpigCgksfssk.aLkrHmr.vH<-* + C++ C ++ +s +L++H+++vH as00107 360 HICQY-CLEVLPSLyNLNEHLKqVH 383 ZnF_C2H2: domain 10 of 29, from 400 to 423: score 24.1, E = 0.02 *->ykCpigCgksfssk.aLkrHmr.vH<-* y+C++ C+++ ++ + L++H+r +H as00107 400 YQCNF-CSEVVNDLnTLQEHIRcSH 423 [output cut off at A = 10 top alignments] //