hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna/full/aisin/as00107/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: as00107 1234 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- zf-C2H2 Zinc finger, C2H2 type 394.6 9.5e-115 29 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 6.4 0.068 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- zf-C2H2 1/29 41 63 .. 1 24 [] 31.1 2.5e-05 zf-C2H2 2/29 69 91 .. 1 24 [] 18.3 0.19 zf-C2H2 3/29 97 119 .. 1 24 [] 31.4 2.1e-05 zf-C2H2 4/29 125 147 .. 1 24 [] 24.7 0.0022 zf-C2H2 5/29 169 192 .. 1 24 [] 17.6 0.31 zf-C2H2 6/29 204 227 .. 1 24 [] 16.0 0.93 zf-C2H2 7/29 233 255 .. 1 24 [] 16.1 0.85 zf-C2H2 8/29 328 352 .. 1 24 [] 11.6 7 zf-C2H2 9/29 360 383 .. 1 24 [] 18.2 0.19 zf-C2H2 10/29 400 423 .. 1 24 [] 15.9 0.97 zf-C2H2 11/29 436 459 .. 1 24 [] 20.1 0.052 zf-C2H2 12/29 483 508 .. 1 24 [] 9.8 11 zf-C2H2 13/29 557 579 .. 1 24 [] 27.2 0.00038 zf-C2H2 14/29 587 609 .. 1 24 [] 25.9 0.00097 zf-C2H2 15/29 617 640 .. 1 24 [] 25.0 0.0017 zf-C2H2 16/29 645 668 .. 1 24 [] 19.1 0.11 zf-C2H2 17/29 675 698 .. 1 24 [] 20.8 0.033 zf-C2H2 18/29 706 728 .. 1 24 [] 17.1 0.41 zf-C2H2 19/29 732 755 .. 1 24 [] 16.9 0.47 zf-C2H2 20/29 809 832 .. 1 24 [] 21.3 0.023 zf-C2H2 21/29 853 875 .. 1 24 [] 26.7 0.00053 zf-C2H2 22/29 882 904 .. 1 24 [] 25.9 0.00096 zf-C2H2 23/29 911 933 .. 1 24 [] 2.2 57 zf-C2H2 24/29 943 965 .. 1 24 [] 8.1 16 zf-C2H2 25/29 1061 1084 .. 1 24 [] 20.8 0.033 zf-C2H2 26/29 1118 1140 .. 1 24 [] 11.2 7.8 zf-C2H2 27/29 1148 1170 .. 1 24 [] 19.9 0.058 zf-C3HC4 1/1 1150 1184 .. 1 52 [] 6.4 0.068 zf-C2H2 28/29 1179 1202 .. 1 24 [] 23.6 0.0045 zf-C2H2 29/29 1209 1232 .. 1 24 [] 20.1 0.052 Alignments of top-scoring domains: zf-C2H2: domain 1 of 29, from 41 to 63: score 31.1, E = 2.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ C+ksFsr s Lk+H ++H as00107 41 YPCQ-FCDKSFSRLSYLKHHEQSH 63 zf-C2H2: domain 2 of 29, from 69 to 91: score 18.3, E = 0.19 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C + F++k + rH++ H as00107 69 FKCT-YCSRLFKHKRSRDRHIKLH 91 zf-C2H2: domain 3 of 29, from 97 to 119: score 31.4, E = 2.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +C+ +Fsr+++Lk Hl+tH as00107 97 YHCS-ECDAAFSRSDHLKIHLKTH 119 zf-C2H2: domain 4 of 29, from 125 to 147: score 24.7, E = 0.0022 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +C + F ++s+L+ H+++H as00107 125 YKCA-ICRRGFLSSSSLHGHMQVH 147 zf-C2H2: domain 5 of 29, from 169 to 192: score 17.6, E = 0.31 *->ykCpfdCgksFsrksnLkrHlrt.H<-* kC+ +C + F +++L++H+ H as00107 169 QKCS-QCEEGFDFPEDLQKHIAEcH 192 zf-C2H2: domain 6 of 29, from 204 to 227: score 16.0, E = 0.93 *->ykCpfdCgksFsrksnLkrHlrt.H<-* +C +C++ F +L +H+ H as00107 204 LQCV-YCHELFVEETSLMNHMEQvH 227 zf-C2H2: domain 7 of 29, from 233 to 255: score 16.1, E = 0.85 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C+ +C +sF + ++L +H+ +H as00107 233 NSCS-ICSESFHTVEELYSHMDSH 255 zf-C2H2: domain 8 of 29, from 328 to 352: score 11.6, E = 7 *->ykCpfdCg.ksFsrksnLkrHlrt.H<-* y+C +C+++ Fs+ + L+ Hl+t H as00107 328 YSCI-YCNkQLFSSLAVLQIHLKTmH 352 zf-C2H2: domain 9 of 29, from 360 to 383: score 18.2, E = 0.19 *->ykCpfdCgksFsrksnLkrHlrt.H<-* + C+ +C ++ + +nL+ Hl+ H as00107 360 HICQ-YCLEVLPSLYNLNEHLKQvH 383 zf-C2H2: domain 10 of 29, from 400 to 423: score 15.9, E = 0.97 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C+ C ++ ++ +L+ H+r +H as00107 400 YQCN-FCSEVVNDLNTLQEHIRCsH 423 zf-C2H2: domain 11 of 29, from 436 to 459: score 20.1, E = 0.052 *->ykCpfdCgksFsrksnLkrHlrt.H<-* + Cp +C F + s+L+ H+r H as00107 436 FFCP-HCYMGFLTDSSLEEHIRQvH 459 zf-C2H2: domain 12 of 29, from 483 to 508: score 9.8, E = 11 *->ykCpfdCg..ksFsrksnLkrHlrt.H<-* y+C+ +C ++ F++ L++H++ +H as00107 483 YSCS-YCTnsPIFNSVLKLNKHIKEnH 508 zf-C2H2: domain 13 of 29, from 557 to 579: score 27.2, E = 0.00038 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cg ++++ +++++Hl+tH as00107 557 YICN-QCGAKYTSLDSFQTHLKTH 579 zf-C2H2: domain 14 of 29, from 587 to 609: score 25.9, E = 0.00097 *->ykCpfdCgksFsrksnLkrHlrtH<-* +Cp +C+k F ++++L +H +H as00107 587 LTCP-QCNKEFPNQESLLKHVTIH 609 zf-C2H2: domain 15 of 29, from 617 to 640: score 25.0, E = 0.0017 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y C+ C+k F++ ++L++Hl H as00107 617 YICE-SCDKQFTSVDDLQKHLLDmH 640 zf-C2H2: domain 16 of 29, from 645 to 668: score 19.1, E = 0.11 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ++C+ C+++F +k + + Hl ++H as00107 645 FRCT-LCQEVFDSKVSIQLHLAVkH 668 zf-C2H2: domain 17 of 29, from 675 to 698: score 20.8, E = 0.033 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C+ C+ F++ +L+ H + +H as00107 675 YRCT-SCNWDFRNETDLQLHVKHnH 698 zf-C2H2: domain 18 of 29, from 706 to 728: score 17.1, E = 0.41 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC Cg+sF + +L+ H+ tH as00107 706 HKCI-FCGESFGTEVELQCHITTH 728 zf-C2H2: domain 19 of 29, from 732 to 755: score 16.9, E = 0.47 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y C+ C k+F L++Hlr +H as00107 732 YNCK-FCSKAFHAIILLEKHLREkH 755 zf-C2H2: domain 20 of 29, from 809 to 832: score 21.3, E = 0.023 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y C+ +Cg +++ L++H+ ++H as00107 809 YGCD-ICGAAYTMETLLQNHQLRdH 832 zf-C2H2: domain 21 of 29, from 853 to 875: score 26.7, E = 0.00053 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C ++F + L+ H++tH as00107 853 YKCN-VCSRTFFSENGLREHMQTH 875 zf-C2H2: domain 22 of 29, from 882 to 904: score 25.9, E = 0.00096 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp +Cg++F + +L+ H+ tH as00107 882 YMCP-ICGERFPSLLTLTEHKVTH 904 zf-C2H2: domain 23 of 29, from 911 to 933: score 2.2, E = 57 *->ykCpfdCgksFsrksnLkrHlrtH<-* C +C+ + +++ H ++H as00107 911 GNCR-ICKMPLQSEEEFLEHCQMH 933 zf-C2H2: domain 24 of 29, from 943 to 965: score 8.1, E = 16 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +C ++ ++ +Lk H H as00107 943 FRCV-VCMQTVTSTLELKIHGTFH 965 zf-C2H2: domain 25 of 29, from 1061 to 1084: score 20.8, E = 0.033 *->ykCpfdCgksFsrksnLkrHlrt.H<-* +C+ C+ +F + s+L++H++t H as00107 1061 TRCS-SCNVKFESESELQNHIQTiH 1084 zf-C2H2: domain 26 of 29, from 1118 to 1140: score 11.2, E = 7.8 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +C+ +F + + + H H as00107 1118 YQCI-KCQMVFYNEWDIQVHVANH 1140 zf-C2H2: domain 27 of 29, from 1148 to 1170: score 19.9, E = 0.058 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ C ++F +++ L+ Hl H as00107 1148 HECK-LCSQTFDSPAKLQCHLIEH 1170 zf-C3HC4: domain 1 of 1, from 1150 to 1184: score 6.4, E = 0.068 *->CrICleelkepsndfplilpCgHsGslkyfCrsClerWlss.sgntt C +C ++++ p l C H +e+ ++ +g+++ as00107 1150 CKLCSQTFDSPA-----KLQC-HL----------IEHSFEGmGGTFK 1180 vkCplC<-* Cp+C as00107 1181 --CPVC 1184 zf-C2H2: domain 28 of 29, from 1179 to 1202: score 23.6, E = 0.0045 *->ykCpfdCgksFsrksnLkrHlrt.H<-* +kCp +C ++F + L++H+ + H as00107 1179 FKCP-VCFTVFVQANKLQQHIFSaH 1202 zf-C2H2: domain 29 of 29, from 1209 to 1232: score 20.1, E = 0.052 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y C+ +C ++F + +L++H +t+H as00107 1209 YDCT-QCPQKFFFQTELQNHTMTqH 1232 //