hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna/full/aisin/as00106/interpro/cnk_1/seq.in
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Query:  as00106  379

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PDZ      Domain present in PSD-95, Dlg, and ZO-1/2.      67.0    2.4e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/1      24    97 ..     1    80 []    67.0  2.4e-15

Alignments of top-scoring domains:
PDZ: domain 1 of 1, from 24 to 97: score 67.0, E = 2.4e-15
                   *->gglGfsivg......gifvssvvpGspAakaGrkslglLkvGDvIle
                      +++Gf+i+g+++ +++i v++v + + A  a       L++GD+I++
     as00106    24    APWGFRITGgrdfhtPIMVTKVAERGKAKDAD------LRPGDIIVA 64   

                   VNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   +NG +s eg+ h+ea+  +++++      +++L + R     
     as00106    65 ING-ESAEGMLHAEAQSKIRQSPS-----PLRLQLDRSQ    97   

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