hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna/full/aisin/as00106/interpro/cnk_1/seq.in
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Query:  as00106  379

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PDZ      PDZ domain (Also known as DHR or GLGF)          59.5    7.3e-14   1
LIM      LIM domain                                      -2.8        0.2   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/1      16    94 ..     1    82 []    59.5  7.3e-14
LIM        1/1     299   348 ..     1    62 []    -2.8      0.2

Alignments of top-scoring domains:
PDZ: domain 1 of 1, from 16 to 94: score 59.5, E = 7.3e-14
                   *->evtlekevkrgglGfsikggsdk..givvsevlpGsgaAeagGrLke
                      ++++    ++ ++Gf+i gg d +++i v++v +  g A+ +  L++
     as00106    16    LTVDVA--GPAPWGFRITGGRDFhtPIMVTKVAER-GKAKDA-DLRP 58   

                   GDvIlsvNGqdvenlsheravlalkgsggsevtLtvl<-*
                   GD+I+++NG++ e++ h++a+ ++++s + +++L++    
     as00106    59 GDIIVAINGESAEGMLHAEAQSKIRQSPS-PLRLQLD    94   

LIM: domain 1 of 1, from 299 to 348: score -2.8, E = 0.2
                   *->CagCgkpIydrevvrrAlnkvwHpeCFrCavCgkpLtegdefyekdg
                      C +C   I+ ++ vr   +++ Hp C +Ca+Cg +L+ ++ +++ d 
     as00106   299    CEKCSTSIA-NQAVRIQEGRYRHPGCYTCADCGLNLKMRG-HFWEDA 343  

                   skelYCkkDYyklfg<-*
                             + + g   
     as00106   344 ----------CAMEG    348  

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