# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/as00079.fasta.nr -Q ../query/FLJ00079.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00079, 84 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826087 sequences Expectation_n fit: rho(ln(x))= 5.8154+/-0.000191; mu= 2.5124+/- 0.011 mean_var=87.6091+/-16.738, 0's: 53 Z-trim: 55 B-trim: 93 in 1/67 Lambda= 0.137025 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|18676414|dbj|BAB84859.1| FLJ00079 protein [Homo ( 84) 604 127.4 2.4e-28 gi|74730149|sp|Q8NBZ0.1|IN80E_HUMAN RecName: Full= ( 244) 530 113.1 1.4e-23 gi|114661928|ref|XP_001147129.1| PREDICTED: hypoth ( 244) 530 113.1 1.4e-23 gi|114661934|ref|XP_001147002.1| PREDICTED: hypoth ( 205) 525 112.1 2.5e-23 gi|109128122|ref|XP_001107210.1| PREDICTED: simila ( 244) 525 112.1 2.8e-23 gi|109128124|ref|XP_001107089.1| PREDICTED: simila ( 205) 520 111.1 4.9e-23 gi|73958467|ref|XP_858555.1| PREDICTED: similar to ( 230) 510 109.1 2.1e-22 gi|73958465|ref|XP_547064.2| PREDICTED: similar to ( 244) 510 109.2 2.2e-22 gi|149725770|ref|XP_001501840.1| PREDICTED: simila ( 244) 510 109.2 2.2e-22 gi|97046498|sp|Q29RS4.1|IN80E_BOVIN RecName: Full= ( 244) 510 109.2 2.2e-22 gi|73958469|ref|XP_849376.1| PREDICTED: similar to ( 205) 505 108.1 3.8e-22 gi|152001055|gb|AAI48161.1| INO80E protein [Bos ta ( 205) 505 108.1 3.8e-22 gi|149067813|gb|EDM17365.1| similar to hypothetica ( 144) 481 103.3 7.7e-21 gi|149067807|gb|EDM17359.1| similar to hypothetica ( 163) 481 103.3 8.5e-21 gi|149067815|gb|EDM17367.1| similar to hypothetica ( 205) 481 103.4 1e-20 gi|81884598|sp|Q6AYH2.1|IN80E_RAT RecName: Full=IN ( 244) 481 103.4 1.2e-20 gi|149067809|gb|EDM17361.1| similar to hypothetica ( 105) 476 102.2 1.2e-20 gi|148685513|gb|EDL17460.1| coiled-coil domain con ( 144) 477 102.5 1.3e-20 gi|148685515|gb|EDL17462.1| coiled-coil domain con ( 163) 477 102.5 1.5e-20 gi|20071573|gb|AAH26475.1| NO80 complex subunit E ( 205) 477 102.6 1.8e-20 gi|148685512|gb|EDL17459.1| coiled-coil domain con ( 105) 472 101.4 2.1e-20 gi|148685511|gb|EDL17458.1| coiled-coil domain con ( 340) 477 102.7 2.7e-20 gi|148685514|gb|EDL17461.1| coiled-coil domain con ( 205) 472 101.6 3.5e-20 gi|126335530|ref|XP_001364052.1| PREDICTED: hypoth ( 245) 448 96.9 1.1e-18 gi|149417830|ref|XP_001521309.1| PREDICTED: hypoth ( 217) 429 93.1 1.3e-17 gi|73970558|ref|XP_860832.1| PREDICTED: hypothetic ( 87) 393 85.7 8.9e-16 gi|119600364|gb|EAW79958.1| hypothetical protein F ( 163) 229 53.5 8.5e-06 gi|114661932|ref|XP_001146930.1| PREDICTED: hypoth ( 195) 195 46.8 0.001 >>gi|18676414|dbj|BAB84859.1| FLJ00079 protein [Homo sap (84 aa) initn: 604 init1: 604 opt: 604 Z-score: 665.1 bits: 127.4 E(): 2.4e-28 Smith-Waterman score: 604; 100.000% identity (100.000% similar) in 84 aa overlap (1-84:1-84) 10 20 30 40 50 60 FLJ000 LVPLCFFPLLQMAVGPPDCPVGGPLTFPGRGSGAGVGTTLTPLPPPKMPPPTILSTVPRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 LVPLCFFPLLQMAVGPPDCPVGGPLTFPGRGSGAGVGTTLTPLPPPKMPPPTILSTVPRQ 10 20 30 40 50 60 70 80 FLJ000 MFSDAGSGDDALDGDDDLVIDIPE :::::::::::::::::::::::: gi|186 MFSDAGSGDDALDGDDDLVIDIPE 70 80 >>gi|74730149|sp|Q8NBZ0.1|IN80E_HUMAN RecName: Full=INO8 (244 aa) initn: 530 init1: 530 opt: 530 Z-score: 579.4 bits: 113.1 E(): 1.4e-23 Smith-Waterman score: 530; 98.667% identity (100.000% similar) in 75 aa overlap (10-84:170-244) 10 20 30 FLJ000 LVPLCFFPLLQMAVGPPDCPVGGPLTFPGRGSGAGVGTT :.:::::::::::::::::::::::::::: gi|747 PFPSDYLALQLPEPSPLRPKREKRPRLPRKLKMAVGPPDCPVGGPLTFPGRGSGAGVGTT 140 150 160 170 180 190 40 50 60 70 80 FLJ000 LTPLPPPKMPPPTILSTVPRQMFSDAGSGDDALDGDDDLVIDIPE ::::::::::::::::::::::::::::::::::::::::::::: gi|747 LTPLPPPKMPPPTILSTVPRQMFSDAGSGDDALDGDDDLVIDIPE 200 210 220 230 240 >>gi|114661928|ref|XP_001147129.1| PREDICTED: hypothetic (244 aa) initn: 530 init1: 530 opt: 530 Z-score: 579.4 bits: 113.1 E(): 1.4e-23 Smith-Waterman score: 530; 98.667% identity (100.000% similar) in 75 aa overlap (10-84:170-244) 10 20 30 FLJ000 LVPLCFFPLLQMAVGPPDCPVGGPLTFPGRGSGAGVGTT :.:::::::::::::::::::::::::::: gi|114 PFPSDYLALQLPEPSPLRPKREKRPRLPRKLKMAVGPPDCPVGGPLTFPGRGSGAGVGTT 140 150 160 170 180 190 40 50 60 70 80 FLJ000 LTPLPPPKMPPPTILSTVPRQMFSDAGSGDDALDGDDDLVIDIPE ::::::::::::::::::::::::::::::::::::::::::::: gi|114 LTPLPPPKMPPPTILSTVPRQMFSDAGSGDDALDGDDDLVIDIPE 200 210 220 230 240 >>gi|114661934|ref|XP_001147002.1| PREDICTED: hypothetic (205 aa) initn: 525 init1: 525 opt: 525 Z-score: 575.1 bits: 112.1 E(): 2.5e-23 Smith-Waterman score: 525; 97.368% identity (98.684% similar) in 76 aa overlap (9-84:130-205) 10 20 30 FLJ000 LVPLCFFPLLQMAVGPPDCPVGGPLTFPGRGSGAGVGT : .::::::::::::::::::::::::::: gi|114 PLGGTPSPSSLSLPPSTGFPLQASGVPSPYLSSMAVGPPDCPVGGPLTFPGRGSGAGVGT 100 110 120 130 140 150 40 50 60 70 80 FLJ000 TLTPLPPPKMPPPTILSTVPRQMFSDAGSGDDALDGDDDLVIDIPE :::::::::::::::::::::::::::::::::::::::::::::: gi|114 TLTPLPPPKMPPPTILSTVPRQMFSDAGSGDDALDGDDDLVIDIPE 160 170 180 190 200 >>gi|109128122|ref|XP_001107210.1| PREDICTED: similar to (244 aa) initn: 525 init1: 525 opt: 525 Z-score: 574.1 bits: 112.1 E(): 2.8e-23 Smith-Waterman score: 525; 97.333% identity (100.000% similar) in 75 aa overlap (10-84:170-244) 10 20 30 FLJ000 LVPLCFFPLLQMAVGPPDCPVGGPLTFPGRGSGAGVGTT :.:::::::::::::::::::::::::::. gi|109 PFPSDYLALQLPEPSPLRPKREKRPRLPRKLKMAVGPPDCPVGGPLTFPGRGSGAGVGTA 140 150 160 170 180 190 40 50 60 70 80 FLJ000 LTPLPPPKMPPPTILSTVPRQMFSDAGSGDDALDGDDDLVIDIPE ::::::::::::::::::::::::::::::::::::::::::::: gi|109 LTPLPPPKMPPPTILSTVPRQMFSDAGSGDDALDGDDDLVIDIPE 200 210 220 230 240 >>gi|109128124|ref|XP_001107089.1| PREDICTED: similar to (205 aa) initn: 520 init1: 520 opt: 520 Z-score: 569.8 bits: 111.1 E(): 4.9e-23 Smith-Waterman score: 520; 96.053% identity (98.684% similar) in 76 aa overlap (9-84:130-205) 10 20 30 FLJ000 LVPLCFFPLLQMAVGPPDCPVGGPLTFPGRGSGAGVGT : .::::::::::::::::::::::::::: gi|109 PLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSMAVGPPDCPVGGPLTFPGRGSGAGVGT 100 110 120 130 140 150 40 50 60 70 80 FLJ000 TLTPLPPPKMPPPTILSTVPRQMFSDAGSGDDALDGDDDLVIDIPE .::::::::::::::::::::::::::::::::::::::::::::: gi|109 ALTPLPPPKMPPPTILSTVPRQMFSDAGSGDDALDGDDDLVIDIPE 160 170 180 190 200 >>gi|73958467|ref|XP_858555.1| PREDICTED: similar to CG1 (230 aa) initn: 510 init1: 510 opt: 510 Z-score: 558.4 bits: 109.1 E(): 2.1e-22 Smith-Waterman score: 510; 93.333% identity (100.000% similar) in 75 aa overlap (10-84:156-230) 10 20 30 FLJ000 LVPLCFFPLLQMAVGPPDCPVGGPLTFPGRGSGAGVGTT :.::::::::::::::::::::::::::.. gi|739 PFPSDYLALQLPEPSPLRPKREKRPRLPRKLKMAVGPPDCPVGGPLTFPGRGSGAGVGAA 130 140 150 160 170 180 40 50 60 70 80 FLJ000 LTPLPPPKMPPPTILSTVPRQMFSDAGSGDDALDGDDDLVIDIPE :.::::::::::::::.:::::::::::::::::::::::::::: gi|739 LAPLPPPKMPPPTILSAVPRQMFSDAGSGDDALDGDDDLVIDIPE 190 200 210 220 230 >>gi|73958465|ref|XP_547064.2| PREDICTED: similar to CG1 (244 aa) initn: 510 init1: 510 opt: 510 Z-score: 558.0 bits: 109.2 E(): 2.2e-22 Smith-Waterman score: 510; 93.333% identity (100.000% similar) in 75 aa overlap (10-84:170-244) 10 20 30 FLJ000 LVPLCFFPLLQMAVGPPDCPVGGPLTFPGRGSGAGVGTT :.::::::::::::::::::::::::::.. gi|739 PFPSDYLALQLPEPSPLRPKREKRPRLPRKLKMAVGPPDCPVGGPLTFPGRGSGAGVGAA 140 150 160 170 180 190 40 50 60 70 80 FLJ000 LTPLPPPKMPPPTILSTVPRQMFSDAGSGDDALDGDDDLVIDIPE :.::::::::::::::.:::::::::::::::::::::::::::: gi|739 LAPLPPPKMPPPTILSAVPRQMFSDAGSGDDALDGDDDLVIDIPE 200 210 220 230 240 >>gi|149725770|ref|XP_001501840.1| PREDICTED: similar to (244 aa) initn: 510 init1: 510 opt: 510 Z-score: 558.0 bits: 109.2 E(): 2.2e-22 Smith-Waterman score: 510; 93.333% identity (100.000% similar) in 75 aa overlap (10-84:170-244) 10 20 30 FLJ000 LVPLCFFPLLQMAVGPPDCPVGGPLTFPGRGSGAGVGTT :.::::::::::::::::::::::::::.. gi|149 PFPSDYLALQLPEPSPLRPKREKRPRLPRKLKMAVGPPDCPVGGPLTFPGRGSGAGVGAA 140 150 160 170 180 190 40 50 60 70 80 FLJ000 LTPLPPPKMPPPTILSTVPRQMFSDAGSGDDALDGDDDLVIDIPE :.::::::::::::::.:::::::::::::::::::::::::::: gi|149 LAPLPPPKMPPPTILSAVPRQMFSDAGSGDDALDGDDDLVIDIPE 200 210 220 230 240 >>gi|97046498|sp|Q29RS4.1|IN80E_BOVIN RecName: Full=INO8 (244 aa) initn: 510 init1: 510 opt: 510 Z-score: 558.0 bits: 109.2 E(): 2.2e-22 Smith-Waterman score: 510; 93.333% identity (100.000% similar) in 75 aa overlap (10-84:170-244) 10 20 30 FLJ000 LVPLCFFPLLQMAVGPPDCPVGGPLTFPGRGSGAGVGTT :.::::::::::::::::::::::::::.. gi|970 PFPSDYLALQLPEPSPLRPKREKRPRLPRKLKMAVGPPDCPVGGPLTFPGRGSGAGVGAA 140 150 160 170 180 190 40 50 60 70 80 FLJ000 LTPLPPPKMPPPTILSTVPRQMFSDAGSGDDALDGDDDLVIDIPE :.::::::::::::::.:::::::::::::::::::::::::::: gi|970 LAPLPPPKMPPPTILSAVPRQMFSDAGSGDDALDGDDDLVIDIPE 200 210 220 230 240 84 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 20:11:35 2009 done: Fri Feb 27 20:15:09 2009 Total Scan time: 483.010 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]