hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna/full/aisin/as00070/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: as00070 1382 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- EGF_CA Calcium-binding EGF-like domain 556.1 1.4e-162 15 EGF Epidermal growth factor-like domain. 276.2 2.5e-78 15 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- EGF 1/15 191 220 .. 1 32 [] 25.2 0.0088 EGF_CA 1/15 192 220 .. 1 34 [] -2.6 3.5 EGF_CA 2/15 434 474 .. 1 34 [] 57.2 2.1e-12 EGF 2/15 437 474 .. 1 32 [] 35.0 1e-05 EGF 3/15 656 694 .. 1 32 [] 27.4 0.0019 EGF_CA 3/15 653 694 .. 1 34 [] 34.3 1.6e-05 EGF_CA 4/15 695 738 .. 1 34 [] 43.1 3.6e-08 EGF 4/15 698 738 .. 1 32 [] 28.4 0.00098 EGF_CA 5/15 739 781 .. 1 34 [] 50.5 2.1e-10 EGF 5/15 742 781 .. 1 32 [] 31.2 0.00014 EGF 6/15 785 822 .. 1 32 [] 18.6 0.91 EGF_CA 6/15 782 822 .. 1 34 [] 48.1 1.1e-09 EGF_CA 7/15 823 863 .. 1 34 [] 57.5 1.8e-12 EGF 7/15 826 863 .. 1 32 [] 24.6 0.014 EGF 8/15 867 904 .. 1 32 [] 35.0 1e-05 EGF_CA 8/15 864 904 .. 1 34 [] 55.8 5.7e-12 EGF 9/15 908 944 .. 1 32 [] 27.6 0.0017 EGF_CA 9/15 905 944 .. 1 34 [] 49.5 4.3e-10 EGF 10/15 948 987 .. 1 32 [] 28.4 0.00099 EGF_CA 10/15 945 987 .. 1 34 [] 53.6 2.6e-11 EGF_CA 11/15 1072 1114 .. 1 34 [] 42.8 4.7e-08 EGF 11/15 1075 1114 .. 1 32 [] 23.9 0.022 EGF_CA 12/15 1115 1155 .. 1 34 [] 42.9 4.3e-08 EGF 12/15 1118 1155 .. 1 32 [] 18.4 1 EGF 13/15 1164 1201 .. 1 32 [] 28.4 0.001 EGF_CA 13/15 1161 1201 .. 1 34 [] 56.6 3.2e-12 EGF 14/15 1299 1332 .. 1 32 [] 12.4 21 EGF_CA 14/15 1296 1332 .. 1 34 [] 27.5 0.00066 EGF 15/15 1336 1377 .. 1 32 [] 23.6 0.028 EGF_CA 15/15 1333 1377 .. 1 34 [] 48.6 8.4e-10 Alignments of top-scoring domains: EGF: domain 1 of 15, from 191 to 220: score 25.2, E = 0.0088 *->eCa.pCsnGgtEqnGtCi.sytC.CpgpGytg.rCe<-* C pC nG G+C + +C Cp p +tg+ C+ as00070 191 VCPlPCMNG-----GQCSsRNQClCP-PDFTGrFCQ 220 EGF_CA: domain 1 of 15, from 192 to 220: score -2.6, E = 3.5 *->DiDEC..pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-* C+ pC nGG +C + +C Cpp +t+r C+ as00070 192 ----CplPCMNGG---QCSSrN---QClCPPDFTgRFCQ 220 EGF_CA: domain 2 of 15, from 434 to 474: score 57.2, E = 2.1e-12 *->DiDEC....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe<- Di+EC +++C++G C N++GSYrC CppG++ ++++++C+ as00070 434 DINECampgVCRHG----DCLNnPGSYRCvCPPGHSlgpsrTQCI 474 * as00070 - - EGF: domain 2 of 15, from 437 to 474: score 35.0, E = 1e-05 *->eCa...pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe<- eCa ++ C +G C+++++sy+C Cp pG ++++++++C+ as00070 437 ECAmpgVCRHG------DCLnnpgSYRCvCP-PGHSLgpsrtQCI 474 * as00070 - - EGF: domain 3 of 15, from 656 to 694: score 27.4, E = 0.0019 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe< eC +++ C++G +C+++++ y+C+C pGy+ ++++++C+ as00070 656 ECRlnqnICGHG------ECVpgppDYSChCN-PGYRShpqhrYCV 694 -* as00070 - - EGF_CA: domain 3 of 15, from 653 to 694: score 34.3, E = 1.6e-05 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe< DEC+ ++++C++G C+ ++ Y+C+C pGy++++++r C+ as00070 653 ETDECrlnqnICGHG----ECVPgPPDYSChCNPGYRshpqhRYCV 694 -* as00070 - - EGF_CA: domain 4 of 15, from 695 to 738: score 43.1, E = 3.6e-08 *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.......rnCe< D++EC+ +pC++G g+C N+ GSY C+C Gy+ + + ++r+C+ as00070 695 DVNECeaePCGPGR--GICMNtGGSYNChCNRGYRlhvgaggRSCV 738 -* as00070 - - EGF: domain 4 of 15, from 698 to 738: score 28.4, E = 0.00098 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.......rCe< eC+ +pC++G G+C ++++sy C+C Gy+++ + ++++C+ as00070 698 ECEaePCGPG----RGICMntggSYNChCN-RGYRLhvgaggrSCV 738 -* as00070 - - EGF_CA: domain 5 of 15, from 739 to 781: score 50.5, E = 2.1e-10 *->DiDEC....pCqnGGptgtCiN.vGSYrC.CppGyt......rnCe< D +EC ++++C+ GG CiN +G Y+C+C pGy+ + ++++ Ce as00070 739 DLNECakphLCGDGG---FCINfPGHYKCnCYPGYRlkasrpPVCE 781 -* as00070 - - EGF: domain 5 of 15, from 742 to 781: score 31.2, E = 0.00014 *->eCa...pCsnGgtEqnGtCi....sytC.CpgpGytg......rCe< eCa+++ C+ G G Ci+ ++ y+C+C pGy+++ ++++ Ce as00070 742 ECAkphLCGDG-----GFCInfpgHYKCnCY-PGYRLkasrppVCE 781 -* as00070 - - [output cut off at A = 10 top alignments] //