hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna/full/aisin/as00070/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: as00070 1382 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- EGF_CA Calcium binding EGF domain 402.9 3.1e-117 13 TB TB domain 146.0 6.7e-40 4 EGF EGF-like domain 122.6 7.3e-33 15 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- EGF 1/15 192 219 .. 1 37 [] 28.7 0.00014 TB 1/4 366 409 .. 1 45 [] 15.6 0.0033 EGF 2/15 438 473 .. 1 37 [] 15.2 1.2 EGF_CA 1/13 434 473 .. 1 56 [] 52.3 1e-11 TB 2/4 492 533 .. 1 45 [] 70.5 3.5e-17 EGF 3/15 657 693 .. 1 37 [] 18.6 0.15 EGF_CA 2/13 654 693 .. 1 56 [] -5.1 3.2 EGF 4/15 699 737 .. 1 37 [] 10.0 3.5 EGF_CA 3/13 695 737 .. 1 56 [] 46.9 4.4e-10 EGF_CA 4/13 739 771 .. 1 56 [] 27.1 0.0004 EGF 5/15 743 780 .. 1 37 [] 10.9 2.9 EGF_CA 5/13 782 821 .. 1 56 [] 54.9 1.7e-12 EGF 6/15 786 821 .. 1 37 [] -0.0 28 EGF_CA 6/13 823 862 .. 1 56 [] 50.1 4.8e-11 EGF 7/15 827 862 .. 1 37 [] 18.8 0.13 EGF 8/15 868 903 .. 1 37 [] 31.3 2.3e-05 EGF_CA 7/13 864 903 .. 1 56 [] 51.4 2e-11 EGF 9/15 909 943 .. 1 37 [] 16.2 0.79 EGF_CA 8/13 905 943 .. 1 56 [] 42.6 8.8e-09 EGF 10/15 949 986 .. 1 37 [] 20.5 0.04 EGF_CA 9/13 945 986 .. 1 56 [] 33.1 6.6e-06 TB 3/4 1006 1049 .. 1 45 [] 59.6 6.7e-14 EGF 11/15 1076 1113 .. 1 37 [] 14.5 1.4 EGF_CA 10/13 1072 1113 .. 1 56 [] 30.5 3.8e-05 EGF 12/15 1119 1154 .. 1 37 [] 19.6 0.074 EGF_CA 11/13 1115 1154 .. 1 56 [] 34.0 3.5e-06 EGF_CA 12/13 1161 1200 .. 1 56 [] 41.1 2.5e-08 EGF 13/15 1165 1200 .. 1 37 [] 15.0 1.2 TB 4/4 1225 1270 .. 1 45 [] 23.5 0.00027 EGF 14/15 1302 1331 .. 1 37 [] 9.4 3.9 EGF_CA 13/13 1333 1376 .. 1 56 [] 35.8 1e-06 EGF 15/15 1347 1376 .. 1 37 [] 4.0 12 Alignments of top-scoring domains: EGF: domain 1 of 15, from 192 to 219: score 28.7, E = 0.00014 *->CspnngpCsngGtCvdtpytCeCppGdyfllytGkrC<-* C+ pC+ngG+C + +C Cpp +tG++C as00070 192 CPL---PCMNGGQCSSRN-QCLCPPD-----FTGRFC 219 TB: domain 1 of 4, from 366 to 409: score 15.6, E = 0.0033 *->grC.snplpgravTKse.CCCsvGrgeAWGtp.CElCPvpgtaefke + C+snplpg +TK+e+CC s G+ AWG +C +CP + + ++ as00070 366 QPCgSNPLPG--LTKQEdCCGSIGT--AWGQSkCHKCPQLQYTGVQK 408 L<-* as00070 409 P 409 EGF: domain 2 of 15, from 438 to 473: score 15.2, E = 1.2 *->CspnngpCsngGtCvdtp..ytCeCppGdyfllytGkrC<-* C+ C + G C++ p++y+C CppG + l+ + +C as00070 438 CAMPG-VCRH-GDCLNNPgsYRCVCPPG-HSLGPSRTQC 473 EGF_CA: domain 1 of 13, from 434 to 473: score 52.3, E = 1e-11 *->DvDECatfgtlhvCpDpdentvCvNtiGSFeCvarkdCpeGYeVpvs D++ECa ++ vC + ++C+N+ GS++Cv Cp+G + as00070 434 DINECAM-PG--VC----RHGDCLNNPGSYRCV----CPPGHS---- 465 ennedgtnC<-* ++ +t+C as00070 466 -LGPSRTQC 473 TB: domain 2 of 4, from 492 to 533: score 70.5, E = 3.5e-17 *->grCsnplpgravTKseCCCsvGrgeAWGtpCElCPvpgtaefkeL<- +C++pl r +T++ CCCsvG+ AWG C+ CP++gta+fke+ as00070 492 HQCQHPLTTR-LTRQLCCCSVGK--AWGARCQRCPTDGTAAFKEI 533 * as00070 - - EGF: domain 3 of 15, from 657 to 693: score 18.6, E = 0.15 *->CspnngpCsngGtCvdtp..ytCeCppGdyfllytGkrC<-* C n + C + G+Cv++p++y+C+C pG y+ + + ++C as00070 657 CRLNQNICGH-GECVPGPpdYSCHCNPG-YRSHPQHRYC 693 EGF_CA: domain 2 of 13, from 654 to 693: score -5.1, E = 3.2 *->DvDECatfgtlhvCpDpdentvCvNtiGSFeCvarkdCpeGYeVpvs DEC+ + ++C+ ++Cv ++C C +GY+ as00070 654 -TDECRL-NQ-NICG----HGECVPGPPDYSCH----CNPGYR---- 685 ennedgtnC<-* + C as00070 686 -SHPQHRYC 693 EGF: domain 4 of 15, from 699 to 737: score 10.0, E = 3.5 *->CspnngpCsng.GtCvdtp..ytCeCppGdyfll..ytGkrC<-* C + pC g+G+C++t+++y C+C G y+l+ + G+ C as00070 699 CEAE--PCGPGrGICMNTGgsYNCHCNRG-YRLHvgAGGRSC 737 EGF_CA: domain 3 of 13, from 695 to 737: score 46.9, E = 4.4e-10 *->DvDECatfgtlhvCpDpdentvCvNtiGSFeCvarkdCpeGYeVpvs Dv+EC+ + C+ + ++C Nt GS++C C +GY+ as00070 695 DVNECEA----EPCG--PGRGICMNTGGSYNCH----CNRGYR---L 728 ennedgtnC<-* ++++g C as00070 729 HVGAGGRSC 737 EGF_CA: domain 4 of 13, from 739 to 771: score 27.1, E = 0.0004 *->DvDECatfgtlhvCpDpdentvCvNtiGSFeCvarkdCpeGYeVpvs D++ECa + h C +++ C+N+ G ++C C +GY+ as00070 739 DLNECAK-P--HLC---GDGGFCINFPGHYKCN----CYPGYR---- 771 ennedgtnC<-* as00070 - --------- - EGF: domain 5 of 15, from 743 to 780: score 10.9, E = 2.9 *->CspnngpCsngGtCvdtp..ytCeCppGdyfllyt.GkrC<-* C++ + C gG+C++ p++y+C C pG y+l ++ + C as00070 743 CAKPH-LCGDGGFCINFPghYKCNCYPG-YRLKASrPPVC 780 EGF_CA: domain 5 of 13, from 782 to 821: score 54.9, E = 1.7e-12 *->DvDECatfgtlhvCpDpdentvCvNtiGSFeCvarkdCpeGYeVpvs D+DEC++ + +Cp +++C+N+ GSF+C+ +C +GY+ as00070 782 DIDECRD-PS--SCP----DGKCENKPGSFKCI---ACQPGYR---- 814 ennedgtnC<-* +g++C as00070 815 --SQGGGAC 821 EGF: domain 6 of 15, from 786 to 821: score -0.0, E = 28 *->CspnngpCsngGtCvdtp..ytCe.CppGdyfllytGkrC<-* C + C G+C ++p++++C+ C+pG + + G C as00070 786 CRDPS-SCPD-GKCENKPgsFKCIaCQPG--YRSQGGGAC 821 EGF_CA: domain 6 of 13, from 823 to 862: score 50.1, E = 4.8e-11 *->DvDECatfgtlhvCpDpdentvCvNtiGSFeCvarkdCpeGYeVpvs Dv+ECa+ g C ++C+N GSF+C+ C +GY as00070 823 DVNECAE-GS--PC----SPGWCENLPGSFRCT----CAQGYA---- 854 ennedgtnC<-* + +dg C as00070 855 -PAPDGRSC 862 EGF: domain 7 of 15, from 827 to 862: score 18.8, E = 0.13 *->CspnngpCsngGtCvdtp..ytCeCppGdyfllytGkrC<-* C++ pCs G C ++p++++C C++G y+ + +G+ C as00070 827 CAEGS-PCSP-GWCENLPgsFRCTCAQG-YAPAPDGRSC 862 EGF: domain 8 of 15, from 868 to 903: score 31.3, E = 2.3e-05 *->CspnngpCsngGtCvdtp..ytCeCppGdyfllytGkrC<-* C + C+n G+C +tp++++C+C G y+l+ + +C as00070 868 CEAGD-VCDN-GICSNTPgsFQCQCLSG-YHLSRDRSHC 903 EGF_CA: domain 7 of 13, from 864 to 903: score 51.4, E = 2e-11 *->DvDECatfgtlhvCpDpdentvCvNtiGSFeCvarkdCpeGYeVpvs DvDEC+ g +vC+ n++C Nt GSF+C+ C +GY as00070 864 DVDECEA-G--DVCD----NGICSNTPGSFQCQ----CLSGYH---- 895 ennedgtnC<-* d+ +C as00070 896 -LSRDRSHC 903 EGF: domain 9 of 15, from 909 to 943: score 16.2, E = 0.79 *->CspnngpCsngGtCvdtp..ytCeCppGdyfllytGkrC<-* C+ C + G C++t ++y+C Cp+G + l G++C as00070 909 CDFPA-ACIG-GDCINTNgsYRCLCPQG--HRLVGGRKC 943 EGF_CA: domain 8 of 13, from 905 to 943: score 42.6, E = 8.8e-09 *->DvDECatfgtlhvCpDpdentvCvNtiGSFeCvarkdCpeGYeVpvs D+DEC++ ++ C +++C+Nt GS++C+ Cp+G + as00070 905 DIDECDF-PA--AC----IGGDCINTNGSYRCL----CPQGHR---- 936 ennedgtnC<-* +g +C as00070 937 --LVGGRKC 943 EGF: domain 10 of 15, from 949 to 986: score 20.5, E = 0.04 *->CspnngpCsngGtCvdtp..ytCeCppGdyfllytGkrC<-* Cs++++ C+ +G C +++++y C C++G + +++ C as00070 949 CSQDPSLCLPHGACKNLQgsYVCVCDEG-FTPTQDQHGC 986 EGF_CA: domain 9 of 13, from 945 to 986: score 33.1, E = 6.6e-06 *->DvDECatfgtlhvCpDpdentvCvNtiGSFeCvarkdCpeGYeVpvs D+DEC + + C + C N +GS+ Cv C+eG++ as00070 945 DIDECSQ-DP-SLC---LPHGACKNLQGSYVCV----CDEGFT---- 978 ennedgtnC<-* + d + C as00070 979 -PTQDQHGC 986 TB: domain 3 of 4, from 1006 to 1049: score 59.6, E = 6.7e-14 *->grCsnplpgravTKseCCCsvGrgeAWGtpCE..lCPvpgtaefkeL C+ l+ + vT +eCCCs+G+ +WG++CE +CPv +aef+ L as00070 1006 VFCDSVLATN-VTQQECCCSLGA--GWGDHCEiyPCPVYSSAEFHSL 1049 <-* as00070 - - EGF: domain 11 of 15, from 1076 to 1113: score 14.5, E = 1.4 *->Cspnn.gpCsngGtCvdtp..ytCeCppGdyfllytGkrC<-* C + C+ G+Cv+t+++y+C C++G ++++++ C as00070 1076 CMLFGsEICKE-GKCVNTQpgYECYCKQG-FYYDGNLLEC 1113 EGF_CA: domain 10 of 13, from 1072 to 1113: score 30.5, E = 3.8e-05 *->DvDECatfgtlhvCpDpdentvCvNtiGSFeCvarkdCpeGYeVpvs D+DEC fg ++C + ++CvNt+ ++eC C++G+ as00070 1072 DIDECMLFGS-EIC----KEGKCVNTQPGYECY----CKQGFY---- 1105 ennedgtnC<-* ++ +C as00070 1106 -YDGNLLEC 1113 EGF: domain 12 of 15, from 1119 to 1154: score 19.6, E = 0.074 *->CspnngpCsngGtCvdtp..ytCeCppGdyfllytGkrC<-* C ++ +C n G C +t+++y+C C+p+ ++ ++++C as00070 1119 CLDES-NCRN-GVCENTRggYRCACTPP-AEYSPAQRQC 1154 EGF_CA: domain 11 of 13, from 1115 to 1154: score 34.0, E = 3.5e-06 *->DvDECatfgtlhvCpDpdentvCvNtiGSFeCvarkdC..peGYeVp DvDEC + + +C +n+vC+Nt G+++C C++p+ Y+ as00070 1115 DVDECLD-ES--NC----RNGVCENTRGGYRCA----CtpPAEYS-- 1148 vsennedgtnC<-* + +C as00070 1149 -----PAQRQC 1154 EGF_CA: domain 12 of 13, from 1161 to 1200: score 41.1, E = 2.5e-08 *->DvDECatfgtlhvCpDpdentvCvNtiGSFeCvarkdCpeGYeVpvs DvDEC + ++ C + + CvN GS++C+ C++ + as00070 1161 DVDECQD-PA--AC----RPGRCVNLPGSYRCE----CRPPWV---- 1192 ennedgtnC<-* +++ g C as00070 1193 -PGPSGRDC 1200 EGF: domain 13 of 15, from 1165 to 1200: score 15.0, E = 1.2 *->CspnngpCsngGtCvdtp..ytCeCppGdyfllytGkrC<-* C++ C G+Cv++p++y+CeC p+ + + +G++C as00070 1165 CQDPA-ACRP-GRCVNLPgsYRCECRPP-WVPGPSGRDC 1200 TB: domain 4 of 4, from 1225 to 1270: score 23.5, E = 0.00027 *->grCsnplpgravTKseCCCsvGrgeAWGtpCElCPvpg...taefke g+C +pl+g a+T + CCC Gr +WG +C +CP++g ++++ + as00070 1225 GMCAGPLAGPALTFDDCCCRQGR--GWGAQCRPCPPRGagsHCPTSQ 1269 L<-* as00070 1270 S 1270 EGF: domain 14 of 15, from 1302 to 1331: score 9.4, E = 3.9 *->CspnngpCsngGtCvdtp..ytCeCppGdyfllytGkrC<-* C + G+Cv+ p++ CeCp G ++l+ + rC as00070 1302 CVS--------GRCVPRPggAVCECPGG-FQLDASRARC 1331 EGF_CA: domain 13 of 13, from 1333 to 1376: score 35.8, E = 1e-06 *->DvDECatfgtlh...vCpDpdentvCvNtiGSFeCvarkdCpeGYeV D+DEC++ ++ C +++ CvNt GSF+Cv C++G+ as00070 1333 DIDECRE-LN-QrglLC----KSERCVNTSGSFRCV----CKAGFA- 1368 pvsennedgtnC<-* + ++C as00070 1369 ----RSRPHGAC 1376 EGF: domain 15 of 15, from 1347 to 1376: score 4.0, E = 12 *->CspnngpCsngGtCvdtp..ytCeCppGdyfllytGkrC<-* C ++ +Cv+t ++++C C+ G ++ + C as00070 1347 CKSE--------RCVNTSgsFRCVCKAG-FARSRPHGAC 1376 //