# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/as00069.fasta.huge -Q ../query/FLJ00069.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00069, 579 aa vs ./tmplib.10216 library 2210415 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.9786+/-0.00422; mu= 15.8792+/- 0.285 mean_var=103.1496+/-21.884, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.126282 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1636 ( 1864 res) ff02660 (1864) 102 29.7 3 KIAA0179 ( 762 res) ha02738 ( 762) 93 27.6 5.3 KIAA1246 ( 832 res) hh00149a ( 832) 93 27.7 5.6 KIAA1306 ( 1154 res) fh05845 (1154) 93 27.8 6.8 FLJ00227 ( 196 res) sj06355 ( 196) 84 25.2 7 KIAA0227 ( 336 res) ha02748 ( 336) 86 25.9 7.6 KIAA1051 ( 402 res) hh04271 ( 402) 86 26.0 8.5 FLJ00065 ( 204 res) as00065 ( 204) 82 24.9 9.2 KIAA0338 ( 934 res) hg01242 ( 934) 88 26.8 11 FLJ00028 ( 91 res) as00028 ( 91) 76 23.4 12 FLJ00070 ( 1382 res) as00070 (1382) 89 27.2 13 KIAA0678 ( 2257 res) ef02254 (2257) 91 27.8 13 FLJ00404 ( 261 res) sj07851 ( 261) 80 24.7 14 KIAA1669 ( 1405 res) fh18133 (1405) 88 27.0 15 KIAA1757 ( 1409 res) fh19225(revised) (1409) 87 26.9 17 FLJ00399 ( 165 res) sj06869 ( 165) 75 23.5 20 KIAA0521 ( 1050 res) hg01387 (1050) 84 26.1 20 KIAA1998 ( 607 res) bf00063 ( 607) 81 25.3 21 KIAA1460 ( 1400 res) fh17570 (1400) 85 26.5 21 FLJ00091 ( 170 res) as00091 ( 170) 74 23.4 23 KIAA1152 ( 354 res) hh00415 ( 354) 77 24.3 25 FLJ00327 ( 266 res) sj02293 ( 266) 75 23.8 26 KIAA1812 ( 803 res) hh13045 ( 803) 80 25.3 28 KIAA0751 ( 1200 res) hk04424 (1200) 82 25.9 28 KIAA1883 ( 1480 res) fh02249 (1480) 83 26.1 28 KIAA0860 ( 551 res) hk06518 ( 551) 78 24.7 28 KIAA0816 ( 1950 res) af09475 (1950) 84 26.5 29 KIAA0410 ( 505 res) hg01877 ( 505) 77 24.5 31 KIAA0474 ( 782 res) fj12051 ( 782) 79 25.1 31 KIAA0407 ( 2143 res) hg01339 (2143) 84 26.5 31 KIAA1007 ( 1835 res) bg00162 (1835) 83 26.3 32 KIAA1971 ( 830 res) fk08985 ( 830) 79 25.1 32 KIAA1397 ( 686 res) hj08255 ( 686) 78 24.8 33 KIAA1733 ( 509 res) ph00321 ( 509) 76 24.3 35 FLJ00089 ( 349 res) as00089 ( 349) 74 23.7 35 KIAA1843 ( 1778 res) bf02364 (1778) 82 26.1 36 KIAA1006 ( 1221 res) hk10084 (1221) 80 25.5 36 KIAA0203 ( 1593 res) ha02320 (1593) 81 25.8 38 KIAA1836 ( 718 res) fh12206(revised) ( 718) 77 24.7 38 KIAA0969 ( 1091 res) hj06525 (1091) 79 25.3 38 KIAA1126 ( 618 res) hg02277 ( 618) 76 24.4 39 KIAA0809 ( 1385 res) hk10195 (1385) 80 25.6 39 KIAA0488 ( 523 res) af14633 ( 523) 75 24.1 40 KIAA1535 ( 711 res) fk12792 ( 711) 76 24.5 43 KIAA0112 ( 399 res) ha00609 ( 399) 73 23.6 43 KIAA0370 ( 1132 res) sj06874 (1132) 78 25.1 45 FLJ00362 ( 638 res) sh04538 ( 638) 75 24.2 45 FLJ00361 ( 366 res) sh04352 ( 366) 72 23.4 47 KIAA0133 ( 1527 res) ha03502s1 (1527) 79 25.4 47 KIAA0457 ( 845 res) hg00693 ( 845) 76 24.6 48 >>KIAA1636 ( 1864 res) ff02660 (1864 aa) initn: 78 init1: 53 opt: 102 Z-score: 97.9 bits: 29.7 E(): 3 Smith-Waterman score: 102; 29.268% identity (52.439% similar) in 82 aa overlap (374-455:1191-1272) 350 360 370 380 390 400 FLJ000 LVSGIAPATRSRATPQALLLDALCLLLDILAPKLRPVSTQLYSTREKQQLASLVGTMLAY : .:.: : . : .: . . .: . KIAA16 RELKVSLLLNLSRCRRKMNDFGMAEEFATKALELKPKSYEAYYARARAKRSSRQFAAALE 1170 1180 1190 1200 1210 1220 410 420 430 440 450 460 FLJ000 SLTYRQERTPDGQYIYRLEPNVEELCRFPELPARKPLTYQTKQLIAREIEVEKMRRAEAS .:. . :... : :: ::: :: . : . : : .: . .: : : KIAA16 DLNEAIKLCPNNREIQRLLLRVEEECRQMQQPQQPPPPPQPQQQLPEEAEPEPQHEDIYS 1230 1240 1250 1260 1270 1280 470 480 490 500 510 520 FLJ000 ARVENSPQVDGSPPGLEGLLGGIGEKGVHRPAPRNHEQRLEHIMRRAAREEQPEKDFFGR KIAA16 VQDIFEEEYLEQDVENVSIGLQTEARPSQGLPVIQSPPSSPPHRDSAYISSSPLGSHQVF 1290 1300 1310 1320 1330 1340 >>KIAA0179 ( 762 res) ha02738 (762 aa) initn: 57 init1: 57 opt: 93 Z-score: 93.4 bits: 27.6 E(): 5.3 Smith-Waterman score: 93; 27.368% identity (53.684% similar) in 95 aa overlap (56-146:501-587) 30 40 50 60 70 80 FLJ000 VLGAGGKPNCLVIDEIDGAPVAAINVLLSILNRKGPQEVGPQGP-AVPSGGGRRRRAEGG ....::. :::: . :.::.. . . KIAA01 PMHNKRKRPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRK 480 490 500 510 520 530 90 100 110 120 130 140 FLJ000 LLMRPIICICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEVSLR---QGMRADPGV : . :. . .:. :.:.. ::: :.. .. . : : .: :: KIAA01 LGVVPVNG--SGLSTPAWPPLQQEG-----PPTGPAEGANSHTTLPQRRRLQKKKAGPGS 540 550 560 570 580 150 160 170 180 190 200 FLJ000 LAALCEKTDNDIRACINTLQFLYSRGQRELSVRDVQATRVGLKDQRRGLFSVWQEVFQLP : :: KIAA01 LE-LCGLPSQKTASLKKRKKMRVMSNLVEHNGVLESEAGQPQALGSSGTCSSLKKQKLRA 590 600 610 620 630 640 >>KIAA1246 ( 832 res) hh00149a (832 aa) initn: 72 init1: 43 opt: 93 Z-score: 93.0 bits: 27.7 E(): 5.6 Smith-Waterman score: 93; 23.348% identity (49.780% similar) in 227 aa overlap (89-309:65-280) 60 70 80 90 100 110 FLJ000 KGPQEVGPQGPAVPSGGGRRRRAEGGLLMRPIICICNDQFAPSLRQLKQQAFLLHFPPTL : :.:.. .. :: : . :: :: . KIAA12 LAQALSDQTMETLLGGLLAFGMAFAVVDACPKYCVCQN-LSESLGTLCPSKGLLFVPPDI 40 50 60 70 80 90 120 130 140 150 160 170 FLJ000 PSRLVQ-RLQEVSLRQGMRADPGVLAALCEKT-DNDIRACINTLQFLYSRGQRELSVRDV : :. :: . . : : . ...: . : . . . :. ..:: .. : : . . KIAA12 DRRTVELRLGGNFIIHISRQDFANMTGLVDLTLSRNTISHIQPFSFLDLESLRSLHLDSN 100 110 120 130 140 150 180 190 200 210 220 230 FLJ000 QATRVGLKDQRRGLFSVWQEVF---QLPRAQRRRVGQDPALPADTLLLGDGDAGSLTSAS . .: .: ::: .. . . :: . .: : . : :. .. .: : KIAA12 RLPSLG-EDTLRGLVNLQHLIVNNNQLGGIADEAF-EDFLLTLEDLDLSYNNLHGLPWDS 160 170 180 190 200 210 240 250 260 270 280 290 FLJ000 QRFYRVLHAAA-SAGEHEKVVQGLFDNFLRLRLRDSSLGAVCVALDWLAFDDLLAGAAHH : . :: . . . .....: : .. .: . : . :. : : ..: . KIAA12 VRRMVNLHQLSLDHNLLDHIAEGTFADLQKL----ARLDLTSNRLQKLPPDPIFA----R 220 230 240 250 260 300 310 320 330 340 350 FLJ000 SQSFQLLRYPPFLPVAFHVLFASSHTPRITFPSSQQEAQNRMSQMRNLIQTLVSGIAPAT ::. : : :..: KIAA12 SQASALTATPFAPPLSFSFGGNPLHCNCELLWLRRLERDDDLETCGSPGGLKGRYFWHVR 270 280 290 300 310 320 >>KIAA1306 ( 1154 res) fh05845 (1154 aa) initn: 191 init1: 66 opt: 93 Z-score: 91.4 bits: 27.8 E(): 6.8 Smith-Waterman score: 93; 26.207% identity (54.483% similar) in 145 aa overlap (9-143:757-891) 10 20 30 FLJ000 PPHCSDDRSPEVFRT-RIEAATQMESVLGAGGKPNCLV ::: :. . :... . ..: ::. : KIAA13 IAAMLELSSIGGGGRAARRPPEGHPTPRPASPEPGRVATVLASVKHKEAIGPGGE----V 730 740 750 760 770 780 40 50 60 70 80 FLJ000 IDE---IDGAPVAAINVLLSILNRKGPQEVGPQGPAVPSGGGRRR-----RAEGGLLMRP ... ..: ::.. ::. :.:: : . :: : .: ::.: ..:.:. : KIAA13 VNRRRTLSG-PVTG---LLAT-ARRGPGESADPGPFVEDGTGRQRPRGPSKGEAGVEGPP 790 800 810 820 830 90 100 110 120 130 140 FLJ000 IICI-CNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEVSLRQGMRADPGVLAALCEK . . . . .: ..: ..: : : :.: ... :.. : :. KIAA13 LAKVEASATLKRRIRAKQNQQENVKFILT-ESDTVKRRPKAKEREAGPEPPPPLSVYHNG 840 850 860 870 880 890 150 160 170 180 190 200 FLJ000 TDNDIRACINTLQFLYSRGQRELSVRDVQATRVGLKDQRRGLFSVWQEVFQLPRAQRRRV KIAA13 TGTVRRRPASEQAGPPELPPPPPPAEPPPTDLAHLPPLPPPEGEARKPAKPPVSPKPVLT 900 910 920 930 940 950 >>FLJ00227 ( 196 res) sj06355 (196 aa) initn: 57 init1: 57 opt: 84 Z-score: 91.2 bits: 25.2 E(): 7 Smith-Waterman score: 92; 26.923% identity (51.923% similar) in 156 aa overlap (428-560:5-153) 400 410 420 430 440 450 FLJ000 GTMLAYSLTYRQERTPDGQYIYRLEPNVEELCRFPELPARKPLTYQTKQLIAREIEVE-K : : :. : :: :. .:.. . :.. . FLJ002 RLQILRRRPR-P-RKILAKETNRSVPRRLTRSWS 10 20 30 460 470 480 490 500 FLJ000 MRRAEASARVENSPQVDGSPP------GLEGLLGGIGEKGVHRPAPR---------NHEQ ::.:. .: .. :: :: : : .. :.. ... :: :: . . FLJ002 PRRGESRSRGPSQAQVGGSGPWLLSTSGADSGRGALLPRAASRPRPRALGAGVGKEGAPR 40 50 60 70 80 90 510 520 530 540 550 FLJ000 RLEHIMRRAAR------EEQPEKD-FFGRVVVRSTAVPSAGDTAPEQDSVERRMGTAVGR .: .. .:: :: : : . :.. :..: : ... .:.:. : :: FLJ002 HLPPLQTKAASQILENGEEAPGPDPSLDRMLSSSSSVSSLNSS-----TVRREGGDPGGR 100 110 120 130 140 560 570 FLJ000 SEVWFRFNEGVSNAVRRSLYIRDLL . :: FLJ002 GVDPFRCVAPACPSLAAGPTAAAPQPATYDPGLKPPRCPRPRREPCERP 150 160 170 180 190 >>KIAA0227 ( 336 res) ha02748 (336 aa) initn: 109 init1: 86 opt: 86 Z-score: 90.5 bits: 25.9 E(): 7.6 Smith-Waterman score: 86; 54.545% identity (68.182% similar) in 22 aa overlap (60-81:12-33) 30 40 50 60 70 80 FLJ000 GGKPNCLVIDEIDGAPVAAINVLLSILNRKGPQEVGPQGPAVPSGGGRRRRAEGGLLMRP :: .::. : : ::::.: : KIAA02 SGPRSPRSASPGPASTGPRHPQVAEGGGRERAARSREAGEG 10 20 30 40 90 100 110 120 130 140 FLJ000 IICICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEVSLRQGMRADPGVLAALCEKT KIAA02 PASEAAAAAAGAASGSSGENGSAGRQTAAGCHGRHEACEARGRRPRLLNPGRRGGGGGGG 50 60 70 80 90 100 >>KIAA1051 ( 402 res) hh04271 (402 aa) initn: 94 init1: 71 opt: 86 Z-score: 89.6 bits: 26.0 E(): 8.5 Smith-Waterman score: 86; 26.471% identity (57.843% similar) in 102 aa overlap (236-325:58-154) 210 220 230 240 250 260 FLJ000 RRVGQDPALPADTLLLGDGDAGSLTSASQRFYRVLHAAASAG---EHEKVVQGLFDNFLR : :.. ....: .:: :.: : . KIAA10 PEIIRSPQDDASSPHLQVMLQIHLPGRHTLFVRAMIDSGASGNFIDHEYVAQ----NGIP 30 40 50 60 70 80 270 280 290 300 310 FLJ000 LRLRD-----SSLGAVCVALDWLAFD--DLLAGAAHHSQ--SFQLLRYPPFLPVAFHVLF ::..: .. . .: .. . ::.. . : . ::.. . ::.::.. : . KIAA10 LRIKDWPILVEAIDGRPIASGPVVHETHDLIVDLGDHREVLSFDVTQ-SPFFPVVLGVRW 90 100 110 120 130 140 320 330 340 350 360 370 FLJ000 ASSHTPRITFPSSQQEAQNRMSQMRNLIQTLVSGIAPATRSRATPQALLLDALCLLLDIL :.: : ::. . KIAA10 LSTHDPNITWSTRSIVFDSEYCRYHCRMYSPIPPSLPPPAPQPPLYYPVDGYRVYQPVRY 150 160 170 180 190 200 >>FLJ00065 ( 204 res) as00065 (204 aa) initn: 91 init1: 66 opt: 82 Z-score: 89.0 bits: 24.9 E(): 9.2 Smith-Waterman score: 82; 24.510% identity (56.863% similar) in 102 aa overlap (375-472:78-179) 350 360 370 380 390 400 FLJ000 VSGIAPATRSRATPQALLLDALCLLLDILAPKLRPVSTQLYSTREKQQLASLVGTMLAYS : :::.: . .:. . . :.:: . FLJ000 SLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGLRPTSQEDKATQTLSPASPSQGVMLPCG 50 60 70 80 90 100 410 420 430 440 450 460 FLJ000 LTYRQERTPDGQYIYRLEPNVEELCRFP--ELPARKPLTYQTKQLIAREIE--VEKMRRA .: . .: :. ::: . .: : : . .:.. :::... .....: FLJ000 VTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQPPEGQWQHQAEVQIARKLQCIADQFHRL 110 120 130 140 150 160 470 480 490 500 510 520 FLJ000 EASARVENSPQVDGSPPGLEGLLGGIGEKGVHRPAPRNHEQRLEHIMRRAAREEQPEKDF ... . .:. .: FLJ000 HVQQHQQNQNRVWWQILLFLHNLALNGEENRNGAGPR 170 180 190 200 >>KIAA0338 ( 934 res) hg01242 (934 aa) initn: 44 init1: 44 opt: 88 Z-score: 87.5 bits: 26.8 E(): 11 Smith-Waterman score: 88; 33.333% identity (64.706% similar) in 51 aa overlap (429-475:737-786) 400 410 420 430 440 450 FLJ000 TMLAYSLTYRQERTPDGQYIYRLEPNVEELCRFPELPARKPLTYQTKQL----IAREIEV : :..: .:. .: . : ..:: KIAA03 GLLFSRDLNKGAPSQDDESGGIEDSPDRGACSTPDMPQFEPVKTETMTVSSLAIRKKIEP 710 720 730 740 750 760 460 470 480 490 500 510 FLJ000 EKMRRAEASARVENSPQVDGSPPGLEGLLGGIGEKGVHRPAPRNHEQRLEHIMRRAAREE : . ....:: ..:. ::::: KIAA03 EAVLQTRVSA-MDNTQQVDGSASVGREFIATTPSITTETISTTMENSLKSGKGAAAMIPG 770 780 790 800 810 820 >>FLJ00028 ( 91 res) as00028 (91 aa) initn: 64 init1: 64 opt: 76 Z-score: 87.1 bits: 23.4 E(): 12 Smith-Waterman score: 76; 27.778% identity (51.389% similar) in 72 aa overlap (85-151:9-80) 60 70 80 90 100 110 FLJ000 ILNRKGPQEVGPQGPAVPSGGGRRRRAEGGLLMRPIICICNDQFAPSLRQLKQQAFLLHF :: .: : :: ::: . . : FLJ000 PAGTILPALLSHPDPEGCPDQRAPSSQPHSAALTSGHH 10 20 30 120 130 140 150 160 FLJ000 PPTL--PSRLVQRLQEVSLRQ---GMRADPGVLAALCEKTDNDIRACINTLQFLYSRGQR ::.: :..: . . .:. .. :.. :::. .. FLJ000 PPSLTRPAELCRPQSAENLKCCDFALLQGPAMECPLCEHFESYASIHPRRSHP 40 50 60 70 80 90 170 180 190 200 210 220 FLJ000 ELSVRDVQATRVGLKDQRRGLFSVWQEVFQLPRAQRRRVGQDPALPADTLLLGDGDAGSL 579 residues in 1 query sequences 2210415 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:32:36 2009 done: Fri Feb 27 10:32:36 2009 Total Scan time: 0.630 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]