hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna/full/aisin/as00068/interpro/cnk_1/seq.in
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Query:  as00068  1194

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGEF   Guanine nucleotide exchange factor for Rho/R   116.4    3.2e-30   1
PH       Pleckstrin homology domain.                     35.0      1e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGEF     1/1     739   910 ..     1   211 []   116.4  3.2e-30
PH         1/1     924  1032 ..     1    82 []    35.0    1e-05

Alignments of top-scoring domains:
RhoGEF: domain 1 of 1, from 739 to 910: score 116.4, E = 3.2e-30
                   *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl
                      vl E+++TEr+YVr L++ +e++  +L++++    +p   + +  +l
     as00068   739    VLAEMVATEREYVRALEYTMENYFPELDRPD----VPQGLRGQRAHL 781  

                   FgpNieeiyefHrrFLd.eLeerveewllskdlKsernsviedsgerigd
                   Fg N+e + +fH++F+++eLe++                    +++r++ 
     as00068   782 FG-NLEKLRDFHCHFFLrELEACT------------------RHPPRVAY 812  

                   vFlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeies
                    Fl +     +f +Y+ Y +n+p++ +l +         +F++  + +  
     as00068   813 AFLRH---RVQFGMYALYSKNKPRSDALMSS----YGHTFFKDKQQALGD 855  

                   kpncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLk
                   +          l+L s+L+kP+QR  kY LLL+el + +     +   L 
     as00068   856 H----------LDLASYLLKPIQRMGKYALLLQELARACGGPTQELSALR 895  

                   kAleaikelasqvNe<-*
                   +A+ +++  +++ N+   
     as00068   896 EAQSLVHFQLRHGND    910  

PH: domain 1 of 1, from 924 to 1032: score 35.0, E = 1e-05
                   *->vikeGwLlkks......k.swkkryfvLfngvLlyyksk........
                      +  +G+L ++     +++++   r  +Lf+  Ll+ k+++++++ ++
     as00068   924    LKEQGQLVRQDefvvrtGrHKSVRRIFLFEELLLFSKPRhgptgvdt 970  

                   .kpkgsipLsgcsvre.p.....cFeivt.dr....tlllqAeseeeree
                    ++k s+ + ++ ++e  ++++  Fei+++ r+ ++t++lqA+s   ++ 
     as00068   971 fAYKRSFKMADLGLTEcCgnsnlRFEIWFrRRkardTFVLQASSLAIKQA 1020 

                   Wvealqsaiaka<-*
                   W + +  ++ ++   
     as00068  1021 WTADISHLLWRQ    1032 

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