hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna/full/aisin/as00068/interpro/cnk_1/seq.in
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Query:  as00068  1194

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGEF   RhoGEF domain                                   91.6    1.6e-23   1
PH       PH domain                                       35.2    1.5e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGEF     1/1     739   910 ..     1   207 []    91.6  1.6e-23
PH         1/1     924  1030 ..     1    92 []    35.2  1.5e-06

Alignments of top-scoring domains:
RhoGEF: domain 1 of 1, from 739 to 910: score 91.6, E = 1.6e-23
                   *->vlkElleTEkkYvrdLeildnvymkpLreaaisskpvltpddietiF
                      vl+E+++TE++Yvr Le+   +y  +L+++     p   + +  ++F
     as00068   739    VLAEMVATEREYVRALEYTMENYFPELDRPDV---PQGLRGQRAHLF 782  

                   sNiediyefhreFLkssLearisssqfedlDekkiepsaqrlGdlFlklk
                   +N+e++ +fh +F++ +Lea+ +               ++r++  Fl++ 
     as00068   783 GNLEKLRDFHCHFFLRELEACTRH--------------PPRVAYAFLRH- 817  

                   epflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd
                     ++++Y+ Y +nkp++  l ++    +  + F+ + + ++ +       
     as00068   818 RVQFGMYALYSKNKPRSDALMSS----YGHTFFKDKQQALGDH------- 856  

                   davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedqpdredLkkaldl
                       l+L s+LlkP+qR ++Y LLL+eL          ++   L++a++l
     as00068   857 ----LDLASYLLKPIQRMGKYALLLQELARACGG--PTQELSALREAQSL 900  

                   lqdlaksiNe<-*
                   ++  +++ N+   
     as00068   901 VHFQLRHGND    910  

PH: domain 1 of 1, from 924 to 1030: score 35.2, E = 1.5e-06
                   *->vikeGwLlkkg.....gkkswkkRyfvLfndvLlyykdkk.......
                      ++ +G L ++++   + ++    R ++Lf+  Ll+ k+++++++ ++
     as00068   924    LKEQGQLVRQDefvvrTGRHKSVRRIFLFEELLLFSKPRHgptgvdt 970  

                   kkpkgsipLsgiqvekvpdnkrkncFeirt.dr...etlllqaeseeerk
                   + +k+s+ + ++ ++++  n  +  Fei+++ r+ ++t++lqa+s   ++
     as00068   971 FAYKRSFKMADLGLTECCGN-SNLRFEIWFrRRkarDTFVLQASSLAIKQ 1019 

                   eWvkaiqsair<-*
                    W ++i+ ++    
     as00068  1020 AWTADISHLLW    1030 

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