# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/as00066.fasta.nr -Q ../query/FLJ00066.ptfa /cdna2/lib/nr/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
FLJ00066, 162 aa
vs /cdna2/lib/nr/nr library
2693465022 residues in 7827732 sequences
statistics sampled from 60000 to 7825080 sequences
Expectation_n fit: rho(ln(x))= 5.6702+/-0.000191; mu= 5.6638+/- 0.011
mean_var=91.4667+/-17.335, 0's: 33 Z-trim: 34 B-trim: 144 in 1/65
Lambda= 0.134104
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 36, opt: 24, open/ext: -10/-2, width: 16
The best scores are: opt bits E(7827732)
gi|10440460|dbj|BAB15763.1| FLJ00066 protein [Homo ( 162) 1163 233.8 8.3e-60
gi|119605529|gb|EAW85123.1| hCG1787598 [Homo sapie ( 121) 829 169.1 1.9e-40
>>gi|10440460|dbj|BAB15763.1| FLJ00066 protein [Homo sap (162 aa)
initn: 1163 init1: 1163 opt: 1163 Z-score: 1230.0 bits: 233.8 E(): 8.3e-60
Smith-Waterman score: 1163; 100.000% identity (100.000% similar) in 162 aa overlap (1-162:1-162)
10 20 30 40 50 60
FLJ000 SPPACLVDGQQALPSGGGLYPNSLRQGSVAQAGSGCLSWFCMVHFANPEDQFLGFQASAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|104 SPPACLVDGQQALPSGGGLYPNSLRQGSVAQAGSGCLSWFCMVHFANPEDQFLGFQASAF
10 20 30 40 50 60
70 80 90 100 110 120
FLJ000 LLHVLKPPQGAATPSGSSQGGPAMFSGLPVSPLPSSYPQNPSFIPPPSSCVSCSTHTGEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|104 LLHVLKPPQGAATPSGSSQGGPAMFSGLPVSPLPSSYPQNPSFIPPPSSCVSCSTHTGEA
70 80 90 100 110 120
130 140 150 160
FLJ000 LHSSSIFQPWHRTDGKGRAGFSASGTRGRPHLTPPSPVHQTG
::::::::::::::::::::::::::::::::::::::::::
gi|104 LHSSSIFQPWHRTDGKGRAGFSASGTRGRPHLTPPSPVHQTG
130 140 150 160
>>gi|119605529|gb|EAW85123.1| hCG1787598 [Homo sapiens] (121 aa)
initn: 829 init1: 829 opt: 829 Z-score: 882.5 bits: 169.1 E(): 1.9e-40
Smith-Waterman score: 829; 95.868% identity (98.347% similar) in 121 aa overlap (42-162:1-121)
20 30 40 50 60 70
FLJ000 ALPSGGGLYPNSLRQGSVAQAGSGCLSWFCMVHFANPEDQFLGFQASAFLLHVLKPPQGA
::::::::::::::::::::::::: :.::
gi|119 MVHFANPEDQFLGFQASAFLLHVLKSPHGA
10 20 30
80 90 100 110 120 130
FLJ000 ATPSGSSQGGPAMFSGLPVSPLPSSYPQNPSFIPPPSSCVSCSTHTGEALHSSSIFQPWH
:::::::::::::: :::::::::.::::::::::::::::::.::::::::::::::::
gi|119 ATPSGSSQGGPAMFCGLPVSPLPSGYPQNPSFIPPPSSCVSCSAHTGEALHSSSIFQPWH
40 50 60 70 80 90
140 150 160
FLJ000 RTDGKGRAGFSASGTRGRPHLTPPSPVHQTG
:::::::::::::::::::::::::::::::
gi|119 RTDGKGRAGFSASGTRGRPHLTPPSPVHQTG
100 110 120
162 residues in 1 query sequences
2693465022 residues in 7827732 library sequences
Tcomplib [34.26] (2 proc)
start: Fri Feb 27 18:40:02 2009 done: Fri Feb 27 18:44:13 2009
Total Scan time: 605.110 Total Display time: 0.010
Function used was FASTA [version 34.26.5 April 26, 2007]