# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/as00065.fasta.huge -Q ../query/FLJ00065.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00065, 204 aa vs ./tmplib.10216 library 2210790 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.5851+/-0.0046; mu= 16.9305+/- 0.311 mean_var=132.4315+/-29.678, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.111450 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0429 ( 666 res) hk07754 ( 666) 109 27.9 1.3 KIAA1465 ( 785 res) fh13187 ( 785) 104 27.2 2.5 KIAA1549 ( 1865 res) fh16155s1 (1865) 104 27.8 4 FLJ00050 ( 270 res) as00050 ( 270) 95 25.0 4 FLJ00086 ( 399 res) as00086 ( 399) 94 25.1 5.5 KIAA1862 ( 1070 res) aj00563 (1070) 98 26.5 5.8 FLJ00182 ( 938 res) sj01566 ( 938) 97 26.2 6.1 KIAA0954 ( 1183 res) hj05543s1 (1183) 98 26.5 6.1 KIAA0527 ( 768 res) hg02246 ( 768) 96 25.9 6.1 KIAA0334 ( 848 res) hg01015 ( 848) 96 26.0 6.4 KIAA1139 ( 1124 res) hk00330 (1124) 97 26.3 6.7 KIAA1328 ( 585 res) fh14746s1 ( 585) 94 25.4 6.7 KIAA0775 ( 639 res) hk05255 ( 639) 94 25.5 7 FLJ00263 ( 764 res) sj01530 ( 764) 93 25.4 8.5 FLJ00283 ( 500 res) sh02088 ( 500) 90 24.6 9.6 FLJ00417 ( 600 res) sj06336 ( 600) 89 24.6 12 KIAA1172 ( 929 res) hj03919(revised) ( 929) 91 25.2 12 KIAA0616 ( 634 res) hg03623 ( 634) 89 24.6 12 KIAA0262 ( 811 res) ha07073s1 ( 811) 89 24.8 14 FLJ00066 ( 162 res) as00066 ( 162) 81 22.4 15 KIAA0288 ( 1097 res) ha06116(revised) (1097) 89 25.0 16 KIAA0781 ( 950 res) hk09678 ( 950) 88 24.8 17 KIAA0402 ( 3284 res) hg01127s1 (3284) 93 26.4 18 KIAA1602 ( 1003 res) fj10252 (1003) 87 24.6 19 KIAA0458 ( 1552 res) ef01252 (1552) 89 25.3 19 KIAA1002 ( 962 res) hk09859 ( 962) 86 24.5 21 KIAA1994 ( 1117 res) bh00052 (1117) 86 24.6 23 KIAA1220 ( 791 res) fh03489 ( 791) 84 24.0 24 FLJ00069 ( 579 res) as00069 ( 579) 82 23.5 25 KIAA1048 ( 897 res) hh02560 ( 897) 84 24.1 25 KIAA1669 ( 1405 res) fh18133 (1405) 85 24.6 28 KIAA0863 ( 1181 res) hk06535 (1181) 84 24.3 29 KIAA1080 ( 517 res) hj07082 ( 517) 80 23.1 30 KIAA0380 ( 1539 res) hh00518 (1539) 85 24.6 30 FLJ00253 ( 349 res) sj09455 ( 349) 78 22.5 30 KIAA0600 ( 1080 res) fh08981 (1080) 83 24.1 31 FLJ00221 ( 298 res) sj06160 ( 298) 77 22.2 31 KIAA1101 ( 467 res) hk08029 ( 467) 79 22.8 31 KIAA0539 ( 2046 res) pf00803 (2046) 85 24.8 34 KIAA0428 ( 373 res) hh01409 ( 373) 77 22.3 35 KIAA1451 ( 939 res) bg00289 ( 939) 81 23.6 36 KIAA1330 ( 945 res) fh15188 ( 945) 81 23.6 36 KIAA1812 ( 803 res) hh13045 ( 803) 80 23.4 37 KIAA1357 ( 836 res) fj01906 ( 836) 80 23.4 38 KIAA2036 ( 1322 res) pf06513 (1322) 82 24.0 38 KIAA1439 ( 561 res) hg01641b ( 561) 78 22.8 38 FLJ00059 ( 477 res) as00059 ( 477) 77 22.5 40 FLJ00379 ( 487 res) sj00523 ( 487) 77 22.5 40 KIAA0835 ( 1167 res) hj05861 (1167) 81 23.8 40 FLJ00153 ( 497 res) sh06127 ( 497) 77 22.5 40 >>KIAA0429 ( 666 res) hk07754 (666 aa) initn: 122 init1: 65 opt: 109 Z-score: 104.1 bits: 27.9 E(): 1.3 Smith-Waterman score: 109; 32.877% identity (54.795% similar) in 73 aa overlap (78-148:538-609) 50 60 70 80 90 100 FLJ000 SLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGLRPTSQEDKATQ-TLSPASPSQGVMLPC ::. :. . . :: ::: : : KIAA04 PSVRRGTIGAGPIPIKTPVIPVKTPTVPDLPGVLPAPPDGPEERGEHSPESPSVGEG-PQ 510 520 530 540 550 560 110 120 130 140 150 160 FLJ000 GVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP-PEGQWQHQAEVQIARKLQCIADQFH ::: :. .. :.:. :::. :.. .: ::.. . : KIAA04 GVTSMPSSMWSGQASVNPPLPGPKPSIPEEHRQAIPESEAEDQEREPPSATVSPGQIPES 570 580 590 600 610 620 170 180 190 200 FLJ000 RLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNGAGPR KIAA04 DPADLSPRDTPQGEDMLNAIRRGVKLKKTTTNDRSAPRFS 630 640 650 660 >>KIAA1465 ( 785 res) fh13187 (785 aa) initn: 102 init1: 66 opt: 104 Z-score: 99.1 bits: 27.2 E(): 2.5 Smith-Waterman score: 104; 28.777% identity (48.921% similar) in 139 aa overlap (64-201:213-337) 40 50 60 70 80 90 FLJ000 VFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGLRPTSQEDKATQTL ::.:::. :: :: . .:.. KIAA14 LGALPDLRSLRINNNRLRTLAPGTFDALSALSHLQLYHNPFHCGCGLVWLQAWAASTRVS 190 200 210 220 230 240 100 110 120 130 140 150 FLJ000 SPASPSQGVMLPCGVTEEPQRLFYGNAGYRLP-LPASFPAVLPIGEQPPEGQWQHQAEVQ : : . :. : : : :::: :: . :.: .. .:: .. KIAA14 LPEPDS----IACA---SPPAL-QGVPVYRLPALPCAPPSV-HLSAEPPLEAPGTPLRAG 250 260 270 280 290 160 170 180 190 200 FLJ000 IARKLQCIADQFHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNGAGPR .: :.:::: ..: . : . . . :. .:.::.. :: KIAA14 LAFVLHCIADGHPTPRLQWQLQIPGGT-----VVLEPPVLSGEDDGVGAEEGEGEGDGDL 300 310 320 330 340 KIAA14 LTQTQAQTPTPAPAWPAPPATPRFLALANGSLLVPLLSAKEAGVYTCRAHNELGANSTSI 350 360 370 380 390 400 >>KIAA1549 ( 1865 res) fh16155s1 (1865 aa) initn: 71 init1: 71 opt: 104 Z-score: 95.7 bits: 27.8 E(): 4 Smith-Waterman score: 104; 35.632% identity (55.172% similar) in 87 aa overlap (78-156:1647-1728) 50 60 70 80 90 100 FLJ000 SLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL----RPTSQEDKATQTLSPASPSQGVM ::: :...: .::: : ::.: . KIAA15 TMHSLLDDAFALVAPSSQPASTAGVGPGVPPGLPANSTPSQEERRATQWGSFYSPAQTAN 1620 1630 1640 1650 1660 1670 110 120 130 140 150 FLJ000 LPCGVTEEPQRLFYGNAGYRLPLP-ASF-PAVLPIGEQ-PPEGQW-QHQAEVQIARKLQC ::. :. :: . ::: .: :..: : ::. : : .::. .: . KIAA15 NPCSRYED-----YGMTPPTGPLPRPGFGPGLLQSTELVPPDPQQPQASAEAPFAARGIY 1680 1690 1700 1710 1720 1730 160 170 180 190 200 FLJ000 IADQFHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNGAGPR KIAA15 SEEMPSVARPRPVGGTTGSQIQHLTQVGIASRIGAQPVEIPPSRGSQYGGPGWPSYGEDE 1740 1750 1760 1770 1780 1790 >>FLJ00050 ( 270 res) as00050 (270 aa) initn: 51 init1: 51 opt: 95 Z-score: 95.5 bits: 25.0 E(): 4 Smith-Waterman score: 95; 31.765% identity (55.294% similar) in 85 aa overlap (78-158:154-228) 50 60 70 80 90 100 FLJ000 SLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGLRPTSQEDKATQTLSPASPSQGVMLPCG ::.:: . :. . :: . ::.: : . FLJ000 NLQTSMKELTKKHWDLPSPGELERGSSRVSPGIRPLCEGDRLALP-SPPAQLQGLM-PSA 130 140 150 160 170 180 110 120 130 140 150 160 FLJ000 VTEE----PQRLFYGNAGYRLPLPASFPAVLPIGEQPPEGQWQHQAEVQIARKLQCIADQ .. :: . : . .: : :.: . :: : : :: :: . .:.... FLJ000 PQDKSLVLPQPGLTGLSPWRRPRPSSTKG-LP---QNP-GQ---QAALWVAQRIKMWPPC 190 200 210 220 230 170 180 190 200 FLJ000 FHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNGAGPR FLJ000 FPVRSGLVLHKNTCAGTLCHTSTQTWMLGSMVSLLQF 240 250 260 270 >>FLJ00086 ( 399 res) as00086 (399 aa) initn: 72 init1: 72 opt: 94 Z-score: 93.1 bits: 25.1 E(): 5.5 Smith-Waterman score: 95; 24.286% identity (46.429% similar) in 140 aa overlap (7-141:229-359) 10 20 30 FLJ000 FYSCYCSQPSESNFVT-GLGEMEPSQCVEELEDDVF ..:. : : ::. ..::. .. . FLJ000 GSRGGRKGGPPFTQEEEEEDGGPALQELLSTRPTGSVSSTLGLASIQPSKVGKKKKVGSE 200 210 220 230 240 250 40 50 60 70 80 90 FLJ000 QP----EDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGLRPTSQEDKATQ .: . :.: : . :.: : . :.. . : ::. :. . : FLJ000 KPGTTLPQPPPTTCPPGALQAPEAPASRAEGPVA---VVVNGHTEGPA--PARSAPKEP- 260 270 280 290 300 310 100 110 120 130 140 150 FLJ000 TLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQPPEGQWQHQAEV :. : .:: . .: . : :.: : .: ::. . :: FLJ000 ---PGLPRPLGSFPCPTPQEDFPALGGPCPPRMPPPPGFSAVVLLKGTPPPPPPGLVPPI 320 330 340 350 360 160 170 180 190 200 FLJ000 QIARKLQCIADQFHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNGAGPR FLJ000 SKPPPGFSGLLPSPHPACVPSPATTTTTKA 370 380 390 >>KIAA1862 ( 1070 res) aj00563 (1070 aa) initn: 81 init1: 52 opt: 98 Z-score: 92.7 bits: 26.5 E(): 5.8 Smith-Waterman score: 98; 29.231% identity (58.462% similar) in 65 aa overlap (78-141:959-1017) 50 60 70 80 90 100 FLJ000 SLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGLRPTSQEDKATQTLSPASPSQGVMLPCG : .: . . ...: : ..:: : KIAA18 RGQGESCRAGDLQGLSRGTARRARPLPPDAPPAEPPGLHCSSSQQLLSSTPS------CH 930 940 950 960 970 980 110 120 130 140 150 160 FLJ000 VTEEPQRLFYGNAGYRLPLPASFPAVLPI-GEQPPEGQWQHQAEVQIARKLQCIADQFHR .. . :. ..:.. ::: ::.::. : .:: KIAA18 AAPPAHPLLAHTGGHQSPLPPLVPAALPLQGASPPAASADADVPTSGVAPDGIPERPKEP 990 1000 1010 1020 1030 1040 170 180 190 200 FLJ000 LHVQQHQQNQNRVWWQILLFLHNLALNGEENRNGAGPR KIAA18 SSLLGGVQRALQEELWGGEHRDPRWGAH 1050 1060 1070 >>FLJ00182 ( 938 res) sj01566 (938 aa) initn: 70 init1: 48 opt: 97 Z-score: 92.3 bits: 26.2 E(): 6.1 Smith-Waterman score: 97; 22.564% identity (51.795% similar) in 195 aa overlap (3-190:382-565) 10 20 30 FLJ000 FYSCYCSQPSESNFVTGLGEMEPSQCVEELED ::: . :....:... :: : . FLJ001 ACKMVRWLSAKLGPTVASRHVARNLLRLLTSCYVG-PTRQQFTVSSGESPPLSA-----G 360 370 380 390 400 40 50 60 70 80 FLJ000 DVFQ--PEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFP-LTHCCGPGLR--PTSQED ...: : :. :. : .:: : : :. : .: ... .:: :. .. FLJ001 NIYQKRPVLGDIVSGP--VLSCLLHIARLYGEPVLTYQYLPYISYLVAPGSASGPSRLNS 410 420 430 440 450 460 90 100 110 120 130 140 FLJ000 -KATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPA-SFPAVLPIGEQPPEGQW : . :. .. .: ... ... . .... ::. :: . : : : .: FLJ001 RKEAGLLAAVTLTQKIIVY--LSDTTLMDILPRISHEVLLPVLSFLTSLVTGF-PSGAQA 470 480 490 500 510 520 150 160 170 180 190 200 FLJ000 QHQAEVQIARKLQCIADQFHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNGAGPR . :. . : .. . :::: .. ...:.. ::.: FLJ001 RTILCVKTISLIALICLRIGQEMVQQHLSEPVATFFQVFSQLHELRQQDLKLDPAGRGEG 530 540 550 560 570 580 FLJ001 QLPQVVFSDGQQRPVDPALLDELQKVFTLEMAYTIYVPFSCLLGDIIRKIIPNHELVGEL 590 600 610 620 630 640 >>KIAA0954 ( 1183 res) hj05543s1 (1183 aa) initn: 86 init1: 58 opt: 98 Z-score: 92.3 bits: 26.5 E(): 6.1 Smith-Waterman score: 98; 30.667% identity (49.333% similar) in 75 aa overlap (78-152:164-234) 50 60 70 80 90 100 FLJ000 SLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGLRPTSQEDKATQTLSPASPSQGVMLPCG :: : : :..... :: . .. .: KIAA09 NNNNGMGAAPKPFPGGTGPPIKAEPKAPYAPGTLPDSPPDSGSEAYSPQQVNEPHLLR-- 140 150 160 170 180 190 110 120 130 140 150 160 FLJ000 VTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQPPEGQWQHQAEVQIARKLQCIADQFHRL : :. : . .. :: : :: :: : :: : .: KIAA09 -TITPETLCHVGVPSRLEHPPPPPAHLP-GPPPPPPPPPHYPVLQRDLYMKAEPPIPHYA 200 210 220 230 240 170 180 190 200 FLJ000 HVQQHQQNQNRVWWQILLFLHNLALNGEENRNGAGPR KIAA09 AMGQGLVPTDLHHTQQSQMLHQLLQQHGAELPTHPSKKRKHSESPPSTLNAQMLNGMIKQ 250 260 270 280 290 300 >>KIAA0527 ( 768 res) hg02246 (768 aa) initn: 39 init1: 39 opt: 96 Z-score: 92.2 bits: 25.9 E(): 6.1 Smith-Waterman score: 96; 33.708% identity (52.809% similar) in 89 aa overlap (32-119:402-481) 10 20 30 40 50 60 FLJ000 YSCYCSQPSESNFVTGLGEMEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLD : :: : : : :: . :: .. ::. KIAA05 EDRGQGDSSEEAPKQDRLVSISVGRENIARDKVFVPTTGSP--GAGSSVPADSPGSRLLQ 380 390 400 410 420 70 80 90 100 110 120 FLJ000 CPLSRLQLFPLTHCCGPGLRPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQ-RLFYGNA ..: :: :::. ..: : .: .. .:: : : ::. ...::: KIAA05 ---KHLFWFPAEAFHKPGLEKEVDDDTKKQ-FSAGDNHSGVKL---VPGEPETKVIYGNT 430 440 450 460 470 480 130 140 150 160 170 180 FLJ000 GYRLPLPASFPAVLPIGEQPPEGQWQHQAEVQIARKLQCIADQFHRLHVQQHQQNQNRVW KIAA05 DGPSGPFVGKNDSKAGDPVVSSSDESWLDGYPVTDGAWRKTEAEEEEDGDRGDGSVGLDE 490 500 510 520 530 540 >>KIAA0334 ( 848 res) hg01015 (848 aa) initn: 84 init1: 59 opt: 96 Z-score: 91.8 bits: 26.0 E(): 6.4 Smith-Waterman score: 96; 30.556% identity (52.778% similar) in 72 aa overlap (85-155:762-833) 60 70 80 90 100 110 FLJ000 FAQSLLDCPLSRLQLFPLTHCCGPGLRPTSQEDKATQTLSPASPSQGVML-PCGVTEEPQ : .. : : .:::. . : . . KIAA03 LMGQVVTAYPTFATQQQQSQTLSVTQQQQQQSSQEQQLTSVQQPSQAQLTQPPQQFLQTS 740 750 760 770 780 790 120 130 140 150 160 170 FLJ000 RLFYGNAGYRLPLPASFPAVLPIGEQPPEGQWQHQAEVQIARKLQCIADQFHRLHVQQHQ ::..:: . .: : :.:: : . : : : . :..: KIAA03 RLLHGNPSTQLILSAAFPLQQSTFPQSHHQQHQSQQQQQLSRHRTDSLPDPSKVQPQ 800 810 820 830 840 180 190 200 FLJ000 QNQNRVWWQILLFLHNLALNGEENRNGAGPR 204 residues in 1 query sequences 2210790 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:32:32 2009 done: Fri Feb 27 10:32:32 2009 Total Scan time: 0.370 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]