# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/as00063.fasta.nr -Q ../query/FLJ00063.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00063, 133 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826920 sequences Expectation_n fit: rho(ln(x))= 4.2653+/-0.000181; mu= 10.9048+/- 0.010 mean_var=61.9415+/-11.751, 0's: 45 Z-trim: 46 B-trim: 0 in 0/67 Lambda= 0.162961 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|10440454|dbj|BAB15760.1| FLJ00063 protein [Homo ( 133) 951 231.1 3.9e-59 gi|119609276|gb|EAW88870.1| hCG2002356 [Homo sapie ( 132) 944 229.4 1.2e-58 >>gi|10440454|dbj|BAB15760.1| FLJ00063 protein [Homo sap (133 aa) initn: 951 init1: 951 opt: 951 Z-score: 1218.0 bits: 231.1 E(): 3.9e-59 Smith-Waterman score: 951; 100.000% identity (100.000% similar) in 133 aa overlap (1-133:1-133) 10 20 30 40 50 60 FLJ000 QMHLAGIWVIKKNNLIFLFFLYPPAIHPLEYSWSPPKRGQRSQKTMVDMSAVRATQAASQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 QMHLAGIWVIKKNNLIFLFFLYPPAIHPLEYSWSPPKRGQRSQKTMVDMSAVRATQAASQ 10 20 30 40 50 60 70 80 90 100 110 120 FLJ000 PLLLDVCFLLCLSCCEVKAPNTERCARDKGLQVALPTRGRPGEAGRCSGCDGGCVCKLGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 PLLLDVCFLLCLSCCEVKAPNTERCARDKGLQVALPTRGRPGEAGRCSGCDGGCVCKLGV 70 80 90 100 110 120 130 FLJ000 GQPWVSVTVACVI ::::::::::::: gi|104 GQPWVSVTVACVI 130 >>gi|119609276|gb|EAW88870.1| hCG2002356 [Homo sapiens] (132 aa) initn: 944 init1: 944 opt: 944 Z-score: 1209.1 bits: 229.4 E(): 1.2e-58 Smith-Waterman score: 944; 100.000% identity (100.000% similar) in 132 aa overlap (2-133:1-132) 10 20 30 40 50 60 FLJ000 QMHLAGIWVIKKNNLIFLFFLYPPAIHPLEYSWSPPKRGQRSQKTMVDMSAVRATQAASQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MHLAGIWVIKKNNLIFLFFLYPPAIHPLEYSWSPPKRGQRSQKTMVDMSAVRATQAASQ 10 20 30 40 50 70 80 90 100 110 120 FLJ000 PLLLDVCFLLCLSCCEVKAPNTERCARDKGLQVALPTRGRPGEAGRCSGCDGGCVCKLGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PLLLDVCFLLCLSCCEVKAPNTERCARDKGLQVALPTRGRPGEAGRCSGCDGGCVCKLGV 60 70 80 90 100 110 130 FLJ000 GQPWVSVTVACVI ::::::::::::: gi|119 GQPWVSVTVACVI 120 130 133 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 18:25:38 2009 done: Fri Feb 27 18:29:30 2009 Total Scan time: 560.310 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]