# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/as00058.fasta.nr -Q ../query/FLJ00058.ptfa /cdna2/lib/nr/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
FLJ00058, 164 aa
vs /cdna2/lib/nr/nr library
2693465022 residues in 7827732 sequences
statistics sampled from 60000 to 7826311 sequences
Expectation_n fit: rho(ln(x))= 5.3638+/-0.00019; mu= 7.2923+/- 0.011
mean_var=83.5365+/-15.930, 0's: 36 Z-trim: 37 B-trim: 0 in 0/66
Lambda= 0.140325
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 36, opt: 24, open/ext: -10/-2, width: 16
The best scores are: opt bits E(7827732)
gi|10440444|dbj|BAB15755.1| FLJ00058 protein [Homo ( 164) 1172 245.8 2.1e-63
gi|119589778|gb|EAW69372.1| guanine nucleotide bin ( 130) 910 192.7 1.7e-47
>>gi|10440444|dbj|BAB15755.1| FLJ00058 protein [Homo sap (164 aa)
initn: 1172 init1: 1172 opt: 1172 Z-score: 1294.4 bits: 245.8 E(): 2.1e-63
Smith-Waterman score: 1172; 100.000% identity (100.000% similar) in 164 aa overlap (1-164:1-164)
10 20 30 40 50 60
FLJ000 PHCGKYLCRRGTRVHTPTATCAFLPGIPGVNACFMGVSRSARAPPDGELAGGGGSSSSSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|104 PHCGKYLCRRGTRVHTPTATCAFLPGIPGVNACFMGVSRSARAPPDGELAGGGGSSSSSL
10 20 30 40 50 60
70 80 90 100 110 120
FLJ000 GGTSLSQLRQGKRELRTLTPTHAHTQGSVGWEREGRFSFCSLGLPRAFPAAERDTSSQVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|104 GGTSLSQLRQGKRELRTLTPTHAHTQGSVGWEREGRFSFCSLGLPRAFPAAERDTSSQVK
70 80 90 100 110 120
130 140 150 160
FLJ000 GHSGPGPDPVVTHLGTFPDQLRLPCPPLSRKEPEPSPLSHPPQG
::::::::::::::::::::::::::::::::::::::::::::
gi|104 GHSGPGPDPVVTHLGTFPDQLRLPCPPLSRKEPEPSPLSHPPQG
130 140 150 160
>>gi|119589778|gb|EAW69372.1| guanine nucleotide binding (130 aa)
initn: 910 init1: 910 opt: 910 Z-score: 1009.1 bits: 192.7 E(): 1.7e-47
Smith-Waterman score: 910; 100.000% identity (100.000% similar) in 130 aa overlap (35-164:1-130)
10 20 30 40 50 60
FLJ000 KYLCRRGTRVHTPTATCAFLPGIPGVNACFMGVSRSARAPPDGELAGGGGSSSSSLGGTS
::::::::::::::::::::::::::::::
gi|119 MGVSRSARAPPDGELAGGGGSSSSSLGGTS
10 20 30
70 80 90 100 110 120
FLJ000 LSQLRQGKRELRTLTPTHAHTQGSVGWEREGRFSFCSLGLPRAFPAAERDTSSQVKGHSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 LSQLRQGKRELRTLTPTHAHTQGSVGWEREGRFSFCSLGLPRAFPAAERDTSSQVKGHSG
40 50 60 70 80 90
130 140 150 160
FLJ000 PGPDPVVTHLGTFPDQLRLPCPPLSRKEPEPSPLSHPPQG
::::::::::::::::::::::::::::::::::::::::
gi|119 PGPDPVVTHLGTFPDQLRLPCPPLSRKEPEPSPLSHPPQG
100 110 120 130
164 residues in 1 query sequences
2693465022 residues in 7827732 library sequences
Tcomplib [34.26] (2 proc)
start: Fri Feb 27 17:56:55 2009 done: Fri Feb 27 18:01:13 2009
Total Scan time: 621.720 Total Display time: 0.000
Function used was FASTA [version 34.26.5 April 26, 2007]