# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/as00054.fasta.nr -Q ../query/FLJ00054.ptfa /cdna2/lib/nr/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 FLJ00054, 104 aa
 vs /cdna2/lib/nr/nr library

2693465022 residues in 7827732 sequences
 statistics sampled from 60000 to 7827016 sequences
  Expectation_n fit: rho(ln(x))= 5.4473+/-0.000184; mu= 4.3470+/- 0.010
 mean_var=73.1262+/-14.022, 0's: 38 Z-trim: 38  B-trim: 0 in 0/67
 Lambda= 0.149981

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(7827732)
gi|16549121|dbj|BAB70756.1| FLJ00054 protein [Homo ( 104)  731 166.0 9.1e-40
gi|119622927|gb|EAX02522.1| hCG1992770 [Homo sapie (  94)  664 151.5 1.9e-35


>>gi|16549121|dbj|BAB70756.1| FLJ00054 protein [Homo sap  (104 aa)
 initn: 731 init1: 731 opt: 731  Z-score: 870.2  bits: 166.0 E(): 9.1e-40
Smith-Waterman score: 731;  100.000% identity (100.000% similar) in 104 aa overlap (1-104:1-104)

               10        20        30        40        50        60
FLJ000 TSFPAGVYLGMPVPKPSSSTTPAGVPWDPSFQAPASLGTCDSPGGQTQKDLLGEGEPAKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|165 TSFPAGVYLGMPVPKPSSSTTPAGVPWDPSFQAPASLGTCDSPGGQTQKDLLGEGEPAKG
               10        20        30        40        50        60

               70        80        90       100    
FLJ000 VWGALWGTLISHPVPLATFQLALPVRVDQLEQPRIPHPRSLALV
       ::::::::::::::::::::::::::::::::::::::::::::
gi|165 VWGALWGTLISHPVPLATFQLALPVRVDQLEQPRIPHPRSLALV
               70        80        90       100    

>>gi|119622927|gb|EAX02522.1| hCG1992770 [Homo sapiens]   (94 aa)
 initn: 664 init1: 664 opt: 664  Z-score: 792.5  bits: 151.5 E(): 1.9e-35
Smith-Waterman score: 664;  100.000% identity (100.000% similar) in 94 aa overlap (11-104:1-94)

               10        20        30        40        50        60
FLJ000 TSFPAGVYLGMPVPKPSSSTTPAGVPWDPSFQAPASLGTCDSPGGQTQKDLLGEGEPAKG
                 ::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119           MPVPKPSSSTTPAGVPWDPSFQAPASLGTCDSPGGQTQKDLLGEGEPAKG
                         10        20        30        40        50

               70        80        90       100    
FLJ000 VWGALWGTLISHPVPLATFQLALPVRVDQLEQPRIPHPRSLALV
       ::::::::::::::::::::::::::::::::::::::::::::
gi|119 VWGALWGTLISHPVPLATFQLALPVRVDQLEQPRIPHPRSLALV
               60        70        80        90    




104 residues in 1 query   sequences
2693465022 residues in 7827732 library sequences
 Tcomplib [34.26] (2 proc)
 start: Fri Feb 27 17:18:28 2009 done: Fri Feb 27 17:22:07 2009
 Total Scan time: 513.070 Total Display time:  0.000

Function used was FASTA [version 34.26.5 April 26, 2007]