# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/as00054.fasta.huge -Q ../query/FLJ00054.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00054, 104 aa vs ./tmplib.10216 library 2210890 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.4512+/-0.00469; mu= 15.0184+/- 0.317 mean_var=139.1956+/-31.098, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.108708 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00412 ( 749 res) sf00011 ( 749) 105 26.6 1.9 KIAA1139 ( 1124 res) hk00330 (1124) 104 26.7 2.6 KIAA1818 ( 1157 res) hg00622 (1157) 104 26.7 2.6 FLJ00153 ( 497 res) sh06127 ( 497) 94 24.5 5.2 KIAA0855 ( 632 res) hk06219 ( 632) 94 24.7 5.8 KIAA1433 ( 652 res) hh05535 ( 652) 93 24.6 6.6 KIAA1065 ( 665 res) hj05094 ( 665) 93 24.6 6.7 FLJ00070 ( 1382 res) as00070 (1382) 95 25.5 7.6 KIAA1465 ( 785 res) fh13187 ( 785) 91 24.4 9 KIAA1583 ( 435 res) fj06651 ( 435) 88 23.5 9.4 KIAA0612 ( 1810 res) hg00654s1 (1810) 94 25.5 9.7 KIAA0141 ( 536 res) ha03721 ( 536) 88 23.7 10 FLJ00034 ( 1343 res) as00034 (1343) 92 25.0 10 FLJ00355 ( 469 res) sh02302 ( 469) 87 23.4 11 FLJ00294 ( 681 res) sh03769 ( 681) 87 23.7 13 KIAA0880 ( 727 res) hk07457 ( 727) 87 23.7 13 KIAA0998 ( 1226 res) hk08691 (1226) 89 24.4 14 KIAA0985 ( 697 res) hj08038 ( 697) 85 23.4 16 FLJ00159 ( 567 res) sh06608 ( 567) 84 23.1 16 KIAA1224 ( 997 res) fh02652 ( 997) 86 23.8 17 KIAA0563 ( 1652 res) fh23589 (1652) 88 24.5 18 FLJ00361 ( 366 res) sh04352 ( 366) 81 22.3 18 KIAA0298 ( 901 res) hf00341(revised) ( 901) 85 23.6 18 KIAA1883 ( 1480 res) fh02249 (1480) 87 24.3 19 FLJ00371 ( 625 res) sh06716 ( 625) 83 23.0 19 KIAA1308 ( 745 res) fh08652 ( 745) 83 23.1 21 FLJ00185 ( 824 res) sj01856 ( 824) 83 23.2 22 KIAA0595 ( 1666 res) hj02929s1 (1666) 85 24.0 25 FLJ00403 ( 225 res) sj07657 ( 225) 76 21.1 25 KIAA0307 ( 716 res) hg00066 ( 716) 81 22.8 25 KIAA1855 ( 1270 res) fg04654 (1270) 83 23.5 27 KIAA0400 ( 1022 res) hg01091 (1022) 82 23.2 27 KIAA0689 ( 547 res) hk03417 ( 547) 79 22.3 28 KIAA1732 ( 1915 res) bg00050 (1915) 84 24.0 29 KIAA1029 ( 1015 res) fh00363 (1015) 81 23.0 30 KIAA1802 ( 821 res) fj21631 ( 821) 80 22.7 30 KIAA1056 ( 870 res) hh11792 ( 870) 80 22.8 31 KIAA1535 ( 711 res) fk12792 ( 711) 79 22.5 31 FLJ00263 ( 764 res) sj01530 ( 764) 79 22.5 32 KIAA0194 ( 1435 res) ha02703 (1435) 81 23.3 35 KIAA1685 ( 1505 res) pf04287 (1505) 81 23.3 36 KIAA0434 ( 1571 res) hh02165 (1571) 81 23.4 37 KIAA1482 ( 818 res) fj06205 ( 818) 78 22.4 37 KIAA1813 ( 673 res) ph00819b ( 673) 77 22.1 38 KIAA1132 ( 2092 res) hh01132s1 (2092) 82 23.7 38 KIAA1875 ( 922 res) pf00972 ( 922) 78 22.5 40 KIAA0863 ( 1181 res) hk06535 (1181) 79 22.8 40 KIAA1852 ( 948 res) fj01514 ( 948) 78 22.5 40 KIAA1614 ( 1208 res) fj12973 (1208) 79 22.9 40 KIAA1064 ( 1315 res) hj05008s1 (1315) 79 22.9 42 >>FLJ00412 ( 749 res) sf00011 (749 aa) initn: 54 init1: 54 opt: 105 Z-score: 101.3 bits: 26.6 E(): 1.9 Smith-Waterman score: 105; 34.615% identity (50.000% similar) in 78 aa overlap (9-82:14-89) 10 20 30 40 50 FLJ000 TSFPAGVYLGMPVPKPSSSTTPAGVPWDPSFQAPASLGTCDSPGGQTQKDLLGEG ::. : :: :. : .:: .. . : :: . . : : FLJ004 EGGSQAGCRRLLILGL-VRKPRRPPPPTMDPPSPS-RTSQTQPTATSPLTSYRWHTGGGG 10 20 30 40 50 60 70 80 90 100 FLJ000 EPAKG--VWG--ALWGTLISHPVPLATFQLALPVRVDQLEQPRIPHPRSLALV : : : :: : :: .:: :... : : FLJ004 EKAAGGFRWGRFAGWGRALSHQEPMVSTQPAPRSIFRRVLSAPPKESRTSRLRLSKALWG 60 70 80 90 100 110 FLJ004 RHKNPPPEPDPEPEQEAPELEPEPELEPPTPQIPEAPTPNVPVWDIGGFTLLDGKLVLLG 120 130 140 150 160 170 >>KIAA1139 ( 1124 res) hk00330 (1124 aa) initn: 63 init1: 42 opt: 104 Z-score: 98.9 bits: 26.7 E(): 2.6 Smith-Waterman score: 104; 34.951% identity (53.398% similar) in 103 aa overlap (13-99:958-1054) 10 20 30 FLJ000 TSFPAGVYLGMPVPKPSSSTTPA-GVPW----DPSFQAPASL .:.: :. :: ::: .:..: :. KIAA11 LLAFGVASATPGPAAPLPSPTPGESPPASSLPQPEPSSLPAQGVPTPLAPSPAMQPPVP- 930 940 950 960 970 980 40 50 60 70 80 FLJ000 GTCDSPGGQTQ--KDLLGEGEPAKG------VWGALWGTLISHPVPLATFQLAL--PVRV : .:: ... . :: :: . : :: :: .:: .: :::. : . KIAA11 -PCPGPGLESSAASRWNGETEPPAAPAALLKVPGA--GT-APKPVSVACTQLAFSGPKLA 990 1000 1010 1020 1030 1040 90 100 FLJ000 DQLEQPR-IPHPRSLALV .: :: .: :: KIAA11 PRL-GPRPVPPPRPESTGTVGPGQAQQRLEQTSSSLAAALRAAEKSIGTKEQEGTPSAST 1050 1060 1070 1080 1090 1100 >>KIAA1818 ( 1157 res) hg00622 (1157 aa) initn: 38 init1: 38 opt: 104 Z-score: 98.8 bits: 26.7 E(): 2.6 Smith-Waterman score: 104; 31.959% identity (49.485% similar) in 97 aa overlap (4-93:569-663) 10 20 30 FLJ000 TSFPAGVYLGMPVPKPSSSTTPAGVPWDPSFQA ::: .: :.:. .: : : :. KIAA18 QPPPPQPQPPPPPQQPPPPLPQPQAAGSQPPAGPPAVQPQPQPQPQTQPQPVQ-APAKAQ 540 550 560 570 580 590 40 50 60 70 80 FLJ000 PA--SLGTCDSPGGQTQKDLLGEGEPAKGVWGALWGTLISHPVPLATFQ-----LALPVR :: . :. .: . .. : . :. .: : . . :. :: :::: :: :: KIAA18 PAITTGGSAAVLAGTIKTSVTGTSMPTGAVSGNVIVNTIAG-VPAATFQSINKRLASPVA 600 610 620 630 640 650 90 100 FLJ000 VDQLEQPRIPHPRSLALV : : KIAA18 PGALTTPGGSAPAQVVHTQPPPRAVGSPATATPDLVSMATTQGVRAVTSVTASAVVTTNL 660 670 680 690 700 710 >>FLJ00153 ( 497 res) sh06127 (497 aa) initn: 66 init1: 41 opt: 94 Z-score: 93.5 bits: 24.5 E(): 5.2 Smith-Waterman score: 94; 30.864% identity (55.556% similar) in 81 aa overlap (19-98:331-404) 10 20 30 40 FLJ000 TSFPAGVYLGMPVPKPSSSTTPAGVPWDPSFQAPASLGTCDSPGGQTQ :..:.: : ::: . .:.. . :.. . FLJ001 PPAASCPSSPRIRRRISLTKRLSAKLAREKSSSPSGSPGDPS-SPTSSVSPGSPPSSPRS 310 320 330 340 350 50 60 70 80 90 100 FLJ000 KDLLGEGEPAK-GVWGALWGTLISHPVPLATFQLALPVRVDQLEQPRIPHPRSLALV .: . . ::. : : .: .: . .::: : .:::: : FLJ001 RDAPAGSPPASPGPQGPSTKLPLSLDLP-SPRPFALP-----LGSPRIPLPAQQSSEACV 360 370 380 390 400 410 FLJ001 IRVSIDNDHGNLYRSILLTSQDKAPSVVRRALQKHNVPQPWACDYQLFQVLPGDRGWEEM 420 430 440 450 460 470 >>KIAA0855 ( 632 res) hk06219 (632 aa) initn: 90 init1: 66 opt: 94 Z-score: 92.6 bits: 24.7 E(): 5.8 Smith-Waterman score: 94; 31.169% identity (55.844% similar) in 77 aa overlap (17-93:539-611) 10 20 30 40 FLJ000 TSFPAGVYLGMPVPKPSSSTTPAGVPWDPSFQAPASLGTCDSPGGQ ... .::. : .:. :: ::. :. : KIAA08 QGGEEGEAAGAAGDGVAACGSYNEGHGKFLAAAQNPAAEP-SPGAPAPQELGAADKHGDL 510 520 530 540 550 560 50 60 70 80 90 100 FLJ000 TQKDLLGEGEPAKGVWGALWGTLISHPVPLATFQLALPVRVDQLEQPRIPHPRSLALV . .: . :::.: : :. ..:. :: : :. :.: KIAA08 CEASLTNSVEPAQGE--AREGSSQDNPTAQPIVQL-LGEMQDHQEHPGLGSNCCVPCFCW 570 580 590 600 610 620 KIAA08 AWLPRRRR 630 >>KIAA1433 ( 652 res) hh05535 (652 aa) initn: 66 init1: 42 opt: 93 Z-score: 91.6 bits: 24.6 E(): 6.6 Smith-Waterman score: 93; 35.593% identity (55.932% similar) in 59 aa overlap (4-60:406-459) 10 20 30 FLJ000 TSFPAGVYLGMPVPKPSSSTTPAGVPWDPSFQA :.:. .:.:.: ::. : .:: : KIAA14 TAGNNVENQVPPREKSVALAQEKPVENGGCPVGIETPVPMPSPLSSS---GSSLSPSSTA 380 390 400 410 420 430 40 50 60 70 80 90 FLJ000 PASLGT--CDSPGGQTQKDLLGEGEPAKGVWGALWGTLISHPVPLATFQLALPVRVDQLE .:: . :.:: : ::: . . : KIAA14 SSSLTSSPCSSP--VLTKRLLGSSASSPGYQSSYQVGINQRFHAARHKFQSQADQDQQAS 440 450 460 470 480 490 >>KIAA1065 ( 665 res) hj05094 (665 aa) initn: 51 init1: 51 opt: 93 Z-score: 91.6 bits: 24.6 E(): 6.7 Smith-Waterman score: 93; 30.556% identity (58.333% similar) in 72 aa overlap (14-81:402-470) 10 20 30 40 FLJ000 TSFPAGVYLGMPVPKPSSSTTPAGV--PWD-PSFQAPASLGTC : :: .: ::. :: :. . :. KIAA10 AQKAEPWGPSASTNQTNPWGGPAAPASTSDPWPSFGTKPAASIDPWGVPTGATAQSVPKN 380 390 400 410 420 430 50 60 70 80 90 FLJ000 DSPGGQTQKDLLGEGEPAKGVWGALWGTLISHPVPLA-TFQLALPVRVDQLEQPRIPHPR ..: . .:. . :. :. .:::. : .:: .. .:.: KIAA10 SDPWAASQQPASSAGKRASDAWGAVSTT---KPVSVSGSFELFSNLNGTIKDDFSEFDNL 440 450 460 470 480 100 FLJ000 SLALV KIAA10 RTSKKTAESVTSLPSQNNGTTSPDPFESQPLTVASSKPSSARKTPESFLGPNAALVNLDS 490 500 510 520 530 540 >>FLJ00070 ( 1382 res) as00070 (1382 aa) initn: 77 init1: 64 opt: 95 Z-score: 90.5 bits: 25.5 E(): 7.6 Smith-Waterman score: 95; 30.488% identity (36.585% similar) in 82 aa overlap (11-86:339-413) 10 20 30 40 FLJ000 TSFPAGVYLGMPVPKPSSSTTPAGVPWDPSFQAPASLGTC .: :::: :. : :: : FLJ000 VRVHHPPEASVQVHRIESSNAESAAPSQHLLPHPKPSHPRPPTQKPLGRCFQDTLPKQPC 310 320 330 340 350 360 50 60 70 80 90 FLJ000 DS---PGGQTQKDLLGEGEPAKGVWGALWGTLISHPVPLATF---QLALPVRVDQLEQPR : :: :.: : :. :: : : . : ::: FLJ000 GSNPLPGLTKQEDCCGS-------IGTAWGQSKCHKCPQLQYTGVQKPGPVRGEVGADCP 370 380 390 400 410 420 100 FLJ000 IPHPRSLALV FLJ000 QGYKRLNSTHCQDINECAMPGVCRHGDCLNNPGSYRCVCPPGHSLGPSRTQCIADKPEEK 430 440 450 460 470 480 >>KIAA1465 ( 785 res) fh13187 (785 aa) initn: 48 init1: 48 opt: 91 Z-score: 89.3 bits: 24.4 E(): 9 Smith-Waterman score: 91; 24.211% identity (52.632% similar) in 95 aa overlap (2-93:234-326) 10 20 30 FLJ000 TSFPAGVYLGMPVPKPSSSTTPAGVPWDPSF .. :.. ...: : . ..: .. : . KIAA14 PGTFDALSALSHLQLYHNPFHCGCGLVWLQAWAASTRVSLPEPDSIACASPPALQGVPVY 210 220 230 240 250 260 40 50 60 70 80 FLJ000 QAPASLGTCDSPGGQTQKD--LLGEGEPAK-GVWGALWGTLISHPVPLATFQLALPVRVD . :: : :. . . . : . : : . :. .: .::.: .:: .: . KIAA14 RLPAL--PCAPPSVHLSAEPPLEAPGTPLRAGLAFVLHCIADGHPTPRLQWQLQIPGGTV 270 280 290 300 310 320 90 100 FLJ000 QLEQPRIPHPRSLALV :: : KIAA14 VLEPPVLSGEDDGVGAEEGEGEGDGDLLTQTQAQTPTPAPAWPAPPATPRFLALANGSLL 330 340 350 360 370 380 >>KIAA1583 ( 435 res) fj06651 (435 aa) initn: 64 init1: 41 opt: 88 Z-score: 88.9 bits: 23.5 E(): 9.4 Smith-Waterman score: 88; 28.846% identity (52.885% similar) in 104 aa overlap (2-99:28-129) 10 20 30 FLJ000 TSFPAGVYLGMPVPKPSSSTTPAGVPWDPSFQAP : ::. . :. .::. . .: :: . : KIAA15 VVRGEGTFTALFSLPCPQLLCPSMAPGSAPASSGAVIISPSYASSVDCGQAPLDPVYL-P 10 20 30 40 50 40 50 60 70 80 90 FLJ000 ASLGTCDSPGGQTQKDLLGEGEPAKGVWGALWGT-LISHPVPLATFQLAL---PVRVDQL :.: :.: . . . .:. ::.. .. : :. .: : : : : ..:. KIAA15 AALELLDAPE-HFRVQQVGHYPPANSSLSSRSETFLLLQPWPRAQPLLRASYPPFATQQV 60 70 80 90 100 110 100 FLJ000 EQPRI--PHPRSLALV ::. :: : KIAA15 VPPRVTEPHQRPVPWDVRAVSVEAAVTPAEPYARVLFHLKGQDWPPGSGSLPCARLHATH 120 130 140 150 160 170 104 residues in 1 query sequences 2210890 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:30:51 2009 done: Fri Feb 27 10:30:51 2009 Total Scan time: 0.300 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]