# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/as00048.fasta.nr -Q ../query/FLJ00048.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00048, 146 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7825333 sequences Expectation_n fit: rho(ln(x))= 4.7390+/-0.000186; mu= 9.1277+/- 0.010 mean_var=76.4536+/-14.534, 0's: 43 Z-trim: 46 B-trim: 0 in 0/66 Lambda= 0.146682 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|10440426|dbj|BAB15746.1| FLJ00048 protein [Homo ( 146) 1026 225.4 2.3e-57 gi|194374949|dbj|BAG62589.1| unnamed protein produ ( 134) 546 123.8 8.3e-27 gi|61213572|sp|Q7Z6J4.1|FGD2_HUMAN RecName: Full=F ( 655) 552 125.8 1e-26 gi|56204925|emb|CAI20471.1| FYVE, RhoGEF and PH do ( 697) 552 125.8 1.1e-26 gi|114607224|ref|XP_001173495.1| PREDICTED: FYVE, ( 654) 546 124.5 2.5e-26 gi|23271131|gb|AAH23645.1| FYVE, RhoGEF and PH dom ( 655) 546 124.5 2.5e-26 gi|123993873|gb|ABM84538.1| FYVE, RhoGEF and PH do ( 655) 546 124.5 2.5e-26 gi|114607222|ref|XP_527374.2| PREDICTED: FYVE, Rho ( 655) 546 124.5 2.5e-26 gi|158261861|dbj|BAF83108.1| unnamed protein produ ( 655) 535 122.2 1.3e-25 gi|109070980|ref|XP_001116976.1| PREDICTED: simila ( 655) 483 111.2 2.6e-22 gi|194040425|ref|XP_001929608.1| PREDICTED: simila ( 656) 348 82.6 1e-13 gi|194223464|ref|XP_001495203.2| PREDICTED: simila ( 656) 348 82.6 1e-13 gi|73972747|ref|XP_538892.2| PREDICTED: similar to ( 657) 311 74.8 2.4e-11 gi|111120294|gb|ABH06332.1| FYVE, RhoGEF and PH do ( 656) 300 72.4 1.2e-10 gi|164518928|ref|NP_001101087.2| FYVE, RhoGEF and ( 655) 285 69.3 1.1e-09 gi|74217786|dbj|BAE33605.1| unnamed protein produc ( 655) 263 64.6 2.7e-08 gi|61213586|sp|Q8BY35.1|FGD2_MOUSE RecName: Full=F ( 655) 263 64.6 2.7e-08 gi|85375916|gb|ABC70180.1| FGD2 [Mus musculus] ( 655) 260 64.0 4.2e-08 gi|3599940|gb|AAC35430.1| faciogenital dysplasia p ( 727) 260 64.0 4.5e-08 >>gi|10440426|dbj|BAB15746.1| FLJ00048 protein [Homo sap (146 aa) initn: 1026 init1: 1026 opt: 1026 Z-score: 1186.0 bits: 225.4 E(): 2.3e-57 Smith-Waterman score: 1026; 100.000% identity (100.000% similar) in 146 aa overlap (1-146:1-146) 10 20 30 40 50 60 FLJ000 TLSSLQECVGREVKVLLSMFPKKARHPGAPALGICTRQPKSTPGTCCCFPCSPGRKPSGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 TLSSLQECVGREVKVLLSMFPKKARHPGAPALGICTRQPKSTPGTCCCFPCSPGRKPSGL 10 20 30 40 50 60 70 80 90 100 110 120 FLJ000 SLLLRTPEAAPRGQRLEDVHHRPECRPPESPGPREKTNVGEAVGSEPRTVSRRYLNSLKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 SLLLRTPEAAPRGQRLEDVHHRPECRPPESPGPREKTNVGEAVGSEPRTVSRRYLNSLKN 70 80 90 100 110 120 130 140 FLJ000 KLSSEAWRKSCQPVTLSGSGTQVPEG :::::::::::::::::::::::::: gi|104 KLSSEAWRKSCQPVTLSGSGTQVPEG 130 140 >>gi|194374949|dbj|BAG62589.1| unnamed protein product [ (134 aa) initn: 546 init1: 546 opt: 546 Z-score: 637.5 bits: 123.8 E(): 8.3e-27 Smith-Waterman score: 546; 97.531% identity (98.765% similar) in 81 aa overlap (65-145:23-103) 40 50 60 70 80 90 FLJ000 CTRQPKSTPGTCCCFPCSPGRKPSGLSLLLRTPEAAPRGQRLEDVHHRPECRPPESPGPR :::::::::.:::::::::::::::::::: gi|194 MKGASEEKLASVSNLVTVFENSRTPEAAPRGHRLEDVHHRPECRPPESPGPR 10 20 30 40 50 100 110 120 130 140 FLJ000 EKTNVGEAVGSEPRTVSRRYLNSLKNKLSSEAWRKSCQPVTLSGSGTQVPEG :::::::::::::::::::::::::::::::::::::::::::::::: :: gi|194 EKTNVGEAVGSEPRTVSRRYLNSLKNKLSSEAWRKSCQPVTLSGSGTQEPEKKIVQELLE 60 70 80 90 100 110 gi|194 TEQAYVARLHLLDQASGQDTPL 120 130 >>gi|61213572|sp|Q7Z6J4.1|FGD2_HUMAN RecName: Full=FYVE, (655 aa) initn: 552 init1: 552 opt: 552 Z-score: 635.7 bits: 125.8 E(): 1e-26 Smith-Waterman score: 552; 98.765% identity (98.765% similar) in 81 aa overlap (65-145:23-103) 40 50 60 70 80 90 FLJ000 CTRQPKSTPGTCCCFPCSPGRKPSGLSLLLRTPEAAPRGQRLEDVHHRPECRPPESPGPR :::::::::::::::::::::::::::::: gi|612 MKGASEEKLASVSNLVTVFENSRTPEAAPRGQRLEDVHHRPECRPPESPGPR 10 20 30 40 50 100 110 120 130 140 FLJ000 EKTNVGEAVGSEPRTVSRRYLNSLKNKLSSEAWRKSCQPVTLSGSGTQVPEG :::::::::::::::::::::::::::::::::::::::::::::::: :: gi|612 EKTNVGEAVGSEPRTVSRRYLNSLKNKLSSEAWRKSCQPVTLSGSGTQEPEKKIVQELLE 60 70 80 90 100 110 gi|612 TEQAYVARLHLLDQVFFQELLKTARSSKAFPEDVVRVIFSNISSIYQFHSQFFLPELQRR 120 130 140 150 160 170 >>gi|56204925|emb|CAI20471.1| FYVE, RhoGEF and PH domain (697 aa) initn: 552 init1: 552 opt: 552 Z-score: 635.4 bits: 125.8 E(): 1.1e-26 Smith-Waterman score: 552; 98.765% identity (98.765% similar) in 81 aa overlap (65-145:23-103) 40 50 60 70 80 90 FLJ000 CTRQPKSTPGTCCCFPCSPGRKPSGLSLLLRTPEAAPRGQRLEDVHHRPECRPPESPGPR :::::::::::::::::::::::::::::: gi|562 MKGASEEKLASVSNLVTVFENSRTPEAAPRGQRLEDVHHRPECRPPESPGPR 10 20 30 40 50 100 110 120 130 140 FLJ000 EKTNVGEAVGSEPRTVSRRYLNSLKNKLSSEAWRKSCQPVTLSGSGTQVPEG :::::::::::::::::::::::::::::::::::::::::::::::: :: gi|562 EKTNVGEAVGSEPRTVSRRYLNSLKNKLSSEAWRKSCQPVTLSGSGTQEPEKKIVQELLE 60 70 80 90 100 110 gi|562 TEQAYVARLHLLDQAMSDLSWRLQVFFQELLKTARSSKAFPEDVVRVIFSNISSIYQFHS 120 130 140 150 160 170 >>gi|114607224|ref|XP_001173495.1| PREDICTED: FYVE, RhoG (654 aa) initn: 546 init1: 546 opt: 546 Z-score: 628.9 bits: 124.5 E(): 2.5e-26 Smith-Waterman score: 546; 97.531% identity (98.765% similar) in 81 aa overlap (65-145:23-103) 40 50 60 70 80 90 FLJ000 CTRQPKSTPGTCCCFPCSPGRKPSGLSLLLRTPEAAPRGQRLEDVHHRPECRPPESPGPR :::::::::.:::::::::::::::::::: gi|114 MKGASEEKLASVSNLVTVFENSRTPEAAPRGHRLEDVHHRPECRPPESPGPR 10 20 30 40 50 100 110 120 130 140 FLJ000 EKTNVGEAVGSEPRTVSRRYLNSLKNKLSSEAWRKSCQPVTLSGSGTQVPEG :::::::::::::::::::::::::::::::::::::::::::::::: :: gi|114 EKTNVGEAVGSEPRTVSRRYLNSLKNKLSSEAWRKSCQPVTLSGSGTQEPEKKIVQELLE 60 70 80 90 100 110 gi|114 TEQAYVARLHLLDQVFFQELLKTARSSKAFPEDVVRVIFSNISSIYQFHSQFFLPELQRR 120 130 140 150 160 170 >>gi|23271131|gb|AAH23645.1| FYVE, RhoGEF and PH domain (655 aa) initn: 546 init1: 546 opt: 546 Z-score: 628.9 bits: 124.5 E(): 2.5e-26 Smith-Waterman score: 546; 97.531% identity (98.765% similar) in 81 aa overlap (65-145:23-103) 40 50 60 70 80 90 FLJ000 CTRQPKSTPGTCCCFPCSPGRKPSGLSLLLRTPEAAPRGQRLEDVHHRPECRPPESPGPR :::::::::.:::::::::::::::::::: gi|232 MKGASEEKLASVSNLVTVFENSRTPEAAPRGHRLEDVHHRPECRPPESPGPR 10 20 30 40 50 100 110 120 130 140 FLJ000 EKTNVGEAVGSEPRTVSRRYLNSLKNKLSSEAWRKSCQPVTLSGSGTQVPEG :::::::::::::::::::::::::::::::::::::::::::::::: :: gi|232 EKTNVGEAVGSEPRTVSRRYLNSLKNKLSSEAWRKSCQPVTLSGSGTQEPEKKIVQELLE 60 70 80 90 100 110 gi|232 TEQAYVARLHLLDQVFFQELLKTARSSKAFPEDVVRVIFSNISSIYQFHSQFFLPELQRR 120 130 140 150 160 170 >>gi|123993873|gb|ABM84538.1| FYVE, RhoGEF and PH domain (655 aa) initn: 546 init1: 546 opt: 546 Z-score: 628.9 bits: 124.5 E(): 2.5e-26 Smith-Waterman score: 546; 97.531% identity (98.765% similar) in 81 aa overlap (65-145:23-103) 40 50 60 70 80 90 FLJ000 CTRQPKSTPGTCCCFPCSPGRKPSGLSLLLRTPEAAPRGQRLEDVHHRPECRPPESPGPR :::::::::.:::::::::::::::::::: gi|123 MKGASEEKLASVSNLVTVFENSRTPEAAPRGHRLEDVHHRPECRPPESPGPR 10 20 30 40 50 100 110 120 130 140 FLJ000 EKTNVGEAVGSEPRTVSRRYLNSLKNKLSSEAWRKSCQPVTLSGSGTQVPEG :::::::::::::::::::::::::::::::::::::::::::::::: :: gi|123 EKTNVGEAVGSEPRTVSRRYLNSLKNKLSSEAWRKSCQPVTLSGSGTQEPEKKIVQELLE 60 70 80 90 100 110 gi|123 TEQAYVARLHLLDQVFFQELLKTARSSKAFPEDVVRVIFSNISSIYQFHSQFFLPELQRR 120 130 140 150 160 170 >>gi|114607222|ref|XP_527374.2| PREDICTED: FYVE, RhoGEF (655 aa) initn: 546 init1: 546 opt: 546 Z-score: 628.9 bits: 124.5 E(): 2.5e-26 Smith-Waterman score: 546; 97.531% identity (98.765% similar) in 81 aa overlap (65-145:23-103) 40 50 60 70 80 90 FLJ000 CTRQPKSTPGTCCCFPCSPGRKPSGLSLLLRTPEAAPRGQRLEDVHHRPECRPPESPGPR :::::::::.:::::::::::::::::::: gi|114 MKGASEEKLASVSNLVTVFENSRTPEAAPRGHRLEDVHHRPECRPPESPGPR 10 20 30 40 50 100 110 120 130 140 FLJ000 EKTNVGEAVGSEPRTVSRRYLNSLKNKLSSEAWRKSCQPVTLSGSGTQVPEG :::::::::::::::::::::::::::::::::::::::::::::::: :: gi|114 EKTNVGEAVGSEPRTVSRRYLNSLKNKLSSEAWRKSCQPVTLSGSGTQEPEKKIVQELLE 60 70 80 90 100 110 gi|114 TEQAYVARLHLLDQVFFQELLKTARSSKAFPEDVVRVIFSNISSIYQFHSQFFLPELQRR 120 130 140 150 160 170 >>gi|158261861|dbj|BAF83108.1| unnamed protein product [ (655 aa) initn: 535 init1: 535 opt: 535 Z-score: 616.3 bits: 122.2 E(): 1.3e-25 Smith-Waterman score: 535; 96.296% identity (97.531% similar) in 81 aa overlap (65-145:23-103) 40 50 60 70 80 90 FLJ000 CTRQPKSTPGTCCCFPCSPGRKPSGLSLLLRTPEAAPRGQRLEDVHHRPECRPPESPGPR :::::::::.:::::::::::::::::::: gi|158 MKGASEEKLASVSNLVTVFENSRTPEAAPRGHRLEDVHHRPECRPPESPGPR 10 20 30 40 50 100 110 120 130 140 FLJ000 EKTNVGEAVGSEPRTVSRRYLNSLKNKLSSEAWRKSCQPVTLSGSGTQVPEG ::::::::::::::::::::::::::::::::::::::::::: :::: :: gi|158 EKTNVGEAVGSEPRTVSRRYLNSLKNKLSSEAWRKSCQPVTLSRSGTQEPEKKIVQELLE 60 70 80 90 100 110 gi|158 TEQAYVARLHLLDQVFFQELLKTARSSKAFPEDVVRVIFSNISSIYQFHSQFFLPELQRR 120 130 140 150 160 170 >>gi|109070980|ref|XP_001116976.1| PREDICTED: similar to (655 aa) initn: 483 init1: 483 opt: 483 Z-score: 556.8 bits: 111.2 E(): 2.6e-22 Smith-Waterman score: 483; 86.420% identity (92.593% similar) in 81 aa overlap (65-145:23-103) 40 50 60 70 80 90 FLJ000 CTRQPKSTPGTCCCFPCSPGRKPSGLSLLLRTPEAAPRGQRLEDVHHRPECRPPESPGPR :::::::::.::::.::.::::::.:::: gi|109 MKEASEEKLASVSNLVTVFENSRTPEAAPRGHRLEDAHHHPECRPPRSPGPW 10 20 30 40 50 100 110 120 130 140 FLJ000 EKTNVGEAVGSEPRTVSRRYLNSLKNKLSSEAWRKSCQPVTLSGSGTQVPEG :: :::::.:::::::: :::::::::::: ::::::::::::::: : :: gi|109 EKLNVGEAMGSEPRTVSGRYLNSLKNKLSSGAWRKSCQPVTLSGSGMQEPEKKIVQELLE 60 70 80 90 100 110 gi|109 TEQAYVARLHLLDQVFFQELLRAARRSKAFPEDVVRVIFSNISSIYQFHSQFFLPELQRR 120 130 140 150 160 170 146 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 16:44:10 2009 done: Fri Feb 27 16:48:16 2009 Total Scan time: 590.470 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]